NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BOQA-2QA9E
confEVID 1BOQA-2QA9E
pdbIDA 1BOQ
pdbIDB 2QA9
pdbChainA A
pdbChainB E
identity 0.326599985361099
indelSize 3
alignment <alignment>
<seq1>ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNATARIG---GAVVGTFAARVFPGNDRAWVSLT-SAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNITANYAE-GAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG</seq1>
<seq2>--ISGGDAIYSS-TGRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGG----QDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGSGN-----CSS---GGTTFFQPVTEALSAYGVSVY--</seq2>
<ss_1> EEEEEEEEE EEEEEEEEEEE EEEEEE GGG EEEEE --- EEEEEEEEEE EEEEEEE- EEE EEE EEEEEEE EEEEEEE EEEEE -EEE EEEE EEEE EEEEEEEEE EEEEEEEHHHH </ss_1>
<ss_2>-- EEEE - EEEEEEEEEEE EEEEEE HHHH EEEE EE EEE EEEEEEE EEE ---- EEEEEEE EEEEEEEEE EEE EEE EEEE EEEEE- EEEEEEEEEEEE----- ---EEEEEEEEEHHHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BOQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BOQA</entryIDChain>
<sequence>TARIG---GAVVG</sequence>
<secondary-structure>EEEE --- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 291 CA THR A 43 13.087 14.073 17.363 1.00 16.57 C </line>
<line>ATOM 298 CA ALA A 44 15.423 15.496 14.788 1.00 15.25 C </line>
<line>ATOM 303 CA ARG A 45 14.834 14.505 11.083 1.00 13.25 C </line>
<line>ATOM 314 CA ILE A 46 16.982 15.328 8.051 1.00 17.47 C </line>
<line>ATOM 322 CA GLY A 47 15.245 14.696 4.747 1.00 23.05 C </line>
<line>ATOM 326 CA GLY A 48 12.382 12.784 6.359 1.00 28.06 C </line>
<line>ATOM 330 CA ALA A 49 14.820 10.260 8.015 1.00 18.34 C </line>
<line>ATOM 335 CA VAL A 50 15.250 10.287 11.840 1.00 16.77 C </line>
<line>ATOM 342 CA VAL A 51 18.888 11.129 12.750 1.00 12.55 C </line>
<line>ATOM 349 CA GLY A 52 18.821 11.608 16.533 1.00 11.03 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL VAL ALA GLY GLY ILE ARG ALA THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 6.30 7.97 7.04 10.24 11.10 12.81 10.17 6.53 3.76 </line>
<line>ALA CA 5.45 5.94 5.99 8.58 9.36 10.07 6.92 3.88 </line>
<line>ARG CA 7.35 5.53 4.31 5.24 5.59 6.35 3.81 </line>
<line>ILE CA 9.44 6.58 6.54 5.51 5.52 3.79 </line>
<line>GLY CA 12.70 9.49 8.35 5.53 3.80 </line>
<line>GLY CA 12.10 9.27 6.67 3.88 </line>
<line>ALA CA 9.51 6.30 3.85 </line>
<line>VAL CA 6.04 3.84 </line>
<line>VAL CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 299</line>
<line>ALA CA 376</line>
<line>ARG CA 308</line>
<line>ILE CA 322</line>
<line>GLY CA 214</line>
<line>GLY CA 177</line>
<line>ALA CA 203</line>
<line>VAL CA 251</line>
<line>VAL CA 326</line>
<line>GLY CA 354</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QA9</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2QA9E</entryIDChain>
<sequence>TWWANSARTTVLG</sequence>
<secondary-structure>EEE E</secondary-structure>
<atom-coordinate>
<line>ATOM 289 CA THR E 65 18.557 -16.709 -19.131 1.00 8.22 C </line>
<line>ATOM 296 CA TRP E 66 16.306 -13.980 -17.925 1.00 7.79 C </line>
<line>ATOM 310 CA TRP E 67 17.185 -10.550 -16.634 1.00 6.79 C </line>
<line>ATOM 324 CA ALA E 68 15.229 -7.891 -14.672 1.00 9.58 C </line>
<line>ATOM 329 CA ASN E 78 16.615 -4.942 -16.614 1.00 10.32 C </line>
<line>ATOM 337 CA SER E 79 16.930 -3.828 -20.181 1.00 12.13 C </line>
<line>ATOM 343 CA ALA E 80 20.724 -3.552 -19.729 1.00 14.13 C </line>
<line>ATOM 348 CA ARG E 81 20.768 -7.388 -19.188 1.00 11.01 C </line>
<line>ATOM 359 CA THR E 82 22.874 -7.165 -16.000 1.00 12.14 C </line>
<line>ATOM 366 CA THR E 83 20.540 -8.097 -13.063 1.00 10.76 C </line>
<line>ATOM 373 CA VAL E 84 20.026 -11.902 -13.659 1.00 8.01 C </line>
<line>ATOM 380 CA LEU E 85 16.753 -13.408 -12.577 1.00 7.24 C </line>
<line>ATOM 388 CA GLY E 86 17.258 -17.030 -13.395 1.00 6.11 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU VAL THR THR ARG ALA SER ASN ALA TRP TRP THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 5.89 7.56 7.43 10.72 10.93 9.58 13.35 13.03 12.19 10.43 6.79 3.74 </line>
<line>TRP CA 5.54 5.40 6.03 8.73 9.66 8.06 11.47 10.42 9.14 6.99 3.77 </line>
<line>TRP CA 7.24 4.98 4.33 5.48 6.65 5.42 8.43 7.60 5.64 3.84 </line>
<line>ALA CA 9.45 6.09 6.33 5.55 7.79 7.16 8.64 7.05 3.79 </line>
<line>ASN CA 12.53 9.38 8.30 6.16 6.67 5.46 5.34 3.75 </line>
<line>SER CA 14.85 12.23 10.83 9.05 8.00 5.33 3.83 </line>
<line>ALA CA 15.29 12.81 10.35 8.07 5.62 3.87 </line>
<line>ARG CA 11.78 9.80 7.18 6.17 3.83 </line>
<line>THR CA 11.65 9.39 6.00 3.87 </line>
<line>THR CA 9.52 6.54 3.89 </line>
<line>VAL CA 5.83 3.76 </line>
<line>LEU CA 3.75 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 326</line>
<line>TRP CA 394</line>
<line>TRP CA 346</line>
<line>ALA CA 357</line>
<line>ASN CA 245</line>
<line>SER CA 206</line>
<line>ALA CA 153</line>
<line>ARG CA 200</line>
<line>THR CA 176</line>
<line>THR CA 239</line>
<line>VAL CA 295</line>
<line>LEU CA 396</line>
<line>GLY CA 367</line>
</n14>
</entryChain>
<parallel>
<x>-3.6640000343322754</x>
<y>23.58300018310547</y>
<z>26.243000030517578</z>
</parallel>
<rotation>
<x>-0.7630000114440918</x>
<y>-0.6399999856948853</y>
<z>-0.09099999815225601</z>
<x>-0.0430000014603138</x>
<y>0.1899999976158142</y>
<z>-0.9810000061988831</z>
<x>0.6449999809265137</x>
<y>-0.7440000176429749</y>
<z>-0.1720000058412552</z>
</rotation>
<rmsd>1.0427169799804688</rmsd>
<dmax>2.085537910461426</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BOQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BOQA</entryIDChain>
<sequence>WVSLT-SAQTL</sequence>
<secondary-structure>EEEEE- </secondary-structure>
<atom-coordinate>
<line>ATOM 453 CA TRP A 66 22.998 19.512 21.214 1.00 5.15 C </line>
<line>ATOM 467 CA VAL A 67 21.261 16.661 19.318 1.00 11.44 C </line>
<line>ATOM 474 CA SER A 68 22.743 13.206 19.862 1.00 17.03 C </line>
<line>ATOM 480 CA LEU A 69 22.821 11.333 16.649 1.00 17.58 C </line>
<line>ATOM 488 CA THR A 70 22.473 7.677 15.784 1.00 25.09 C </line>
<line>ATOM 495 CA SER A 71 25.661 5.799 14.813 1.00 31.22 C </line>
<line>ATOM 501 CA ALA A 72 24.570 5.747 11.143 1.00 23.00 C </line>
<line>ATOM 506 CA GLN A 73 25.207 9.514 10.713 1.00 17.95 C </line>
<line>ATOM 515 CA THR A 74 28.347 10.932 9.084 1.00 16.63 C </line>
<line>ATOM 522 CA LEU A 75 29.890 13.904 10.809 1.00 12.09 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR GLN ALA SER THR LEU SER VAL TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 13.68 15.79 14.67 17.13 15.37 13.03 9.37 6.45 3.84 </line>
<line>VAL CA 12.43 13.70 11.86 14.03 12.56 9.73 6.16 3.80 </line>
<line>SER CA 11.56 12.36 10.17 11.62 9.43 6.88 3.72 </line>
<line>LEU CA 9.52 9.38 6.65 8.04 6.49 3.77 </line>
<line>THR CA 10.89 9.49 6.05 5.45 3.83 </line>
<line>SER CA 9.98 8.15 5.55 3.83 </line>
<line>ALA CA 9.74 6.74 3.84 </line>
<line>GLN CA 6.42 3.81 </line>
<line>THR CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>TRP CA 503</line>
<line>VAL CA 489</line>
<line>SER CA 389</line>
<line>LEU CA 364</line>
<line>THR CA 261</line>
<line>SER CA 192</line>
<line>ALA CA 177</line>
<line>GLN CA 257</line>
<line>THR CA 256</line>
<line>LEU CA 341</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QA9</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2QA9E</entryIDChain>
<sequence>IVRYTNTTIPK</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 491 CA ILE E 105 8.824 -21.656 -15.910 1.00 6.48 C </line>
<line>ATOM 499 CA VAL E 106 12.031 -19.949 -14.835 1.00 6.22 C </line>
<line>ATOM 506 CA ARG E 107 13.906 -20.924 -11.640 1.00 5.79 C </line>
<line>ATOM 517 CA TYR E 108 15.335 -17.996 -9.751 1.00 5.60 C </line>
<line>ATOM 529 CA THR E 109 19.137 -17.972 -9.335 1.00 6.75 C </line>
<line>ATOM 536 CA ASN E 110 19.182 -14.395 -7.879 1.00 9.01 C </line>
<line>ATOM 544 CA THR E 111 18.841 -15.046 -4.162 1.00 11.67 C </line>
<line>ATOM 551 CA THR E 112 18.540 -11.449 -2.926 1.00 12.44 C </line>
<line>ATOM 558 CA ILE E 113 16.100 -9.821 -5.440 1.00 9.96 C </line>
<line>ATOM 566 CA PRO E 114 12.635 -9.368 -3.874 1.00 9.99 C </line>
<line>ATOM 573 CA LYS E 115 10.091 -11.869 -5.229 1.00 7.60 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ILE THR THR ASN THR TYR ARG VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.62 17.40 19.16 16.79 14.98 12.77 9.68 6.68 3.79 </line>
<line>VAL CA 12.70 15.25 14.40 16.01 13.58 11.42 9.20 6.37 3.83 </line>
<line>ARG CA 11.73 13.98 12.90 13.68 10.72 9.20 6.43 3.77 </line>
<line>TYR CA 9.25 10.78 9.27 9.99 7.23 5.59 3.82 </line>
<line>THR CA 11.66 12.09 9.53 9.16 5.95 3.86 </line>
<line>ASN CA 9.80 9.17 6.03 5.80 3.79 </line>
<line>THR CA 9.37 8.42 6.04 3.82 </line>
<line>THR CA 8.77 6.33 3.86 </line>
<line>ILE CA 6.35 3.83 </line>
<line>PRO CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 483</line>
<line>VAL CA 463</line>
<line>ARG CA 394</line>
<line>TYR CA 368</line>
<line>THR CA 273</line>
<line>ASN CA 260</line>
<line>THR CA 207</line>
<line>THR CA 158</line>
<line>ILE CA 234</line>
<line>PRO CA 238</line>
<line>LYS CA 352</line>
</n14>
</entryChain>
<parallel>
<x>8.126999855041504</x>
<y>28.033000946044922</y>
<z>25.437000274658203</z>
</parallel>
<rotation>
<x>-0.6100000143051147</x>
<y>-0.7929999828338623</y>
<z>0.004999999888241291</z>
<x>-0.07599999755620956</x>
<y>0.05299999937415123</y>
<z>-0.9959999918937683</z>
<x>0.7889999747276306</x>
<y>-0.6079999804496765</y>
<z>-0.09300000220537186</z>
</rotation>
<rmsd>1.3947709798812866</rmsd>
<dmax>2.088347911834717</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1BOQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BOQA</entryIDChain>
<sequence>ANYAE-GAVRG</sequence>
<secondary-structure>EEE -EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 845 CA ALA A 121 17.694 39.745 23.477 1.00 19.05 C </line>
<line>ATOM 850 CA ASN A 122 14.209 39.983 24.971 1.00 22.90 C </line>
<line>ATOM 858 CA TYR A 123 12.197 37.140 23.410 1.00 21.15 C </line>
<line>ATOM 870 CA ALA A 124 8.553 36.202 24.078 1.00 20.69 C </line>
<line>ATOM 875 CA GLU A 125 9.684 33.437 26.431 1.00 18.13 C </line>
<line>ATOM 884 CA GLY A 126 12.288 35.408 28.413 1.00 18.08 C </line>
<line>ATOM 888 CA ALA A 127 15.641 37.262 28.215 1.00 15.69 C </line>
<line>ATOM 893 CA VAL A 128 18.636 35.526 26.527 1.00 15.08 C </line>
<line>ATOM 900 CA ARG A 129 21.871 37.145 27.911 1.00 16.42 C </line>
<line>ATOM 911 CA GLY A 130 25.474 37.264 26.611 1.00 10.79 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ARG VAL ALA GLY GLU ALA TYR ASN ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.75 6.62 5.29 5.73 8.51 10.61 9.82 6.08 3.80 </line>
<line>ASN CA 11.70 8.68 6.47 4.47 6.04 8.09 6.86 3.82 </line>
<line>TYR CA 13.66 10.67 7.33 5.91 5.30 5.40 3.82 </line>
<line>ALA CA 17.14 13.89 10.40 8.28 5.78 3.80 </line>
<line>GLU CA 16.25 12.82 9.19 7.30 3.82 </line>
<line>GLY CA 13.44 9.75 6.62 3.84 </line>
<line>ALA CA 9.96 6.24 3.85 </line>
<line>VAL CA 7.06 3.87 </line>
<line>ARG CA 3.83 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 283</line>
<line>ASN CA 212</line>
<line>TYR CA 222</line>
<line>ALA CA 144</line>
<line>GLU CA 165</line>
<line>GLY CA 167</line>
<line>ALA CA 206</line>
<line>VAL CA 296</line>
<line>ARG CA 275</line>
<line>GLY CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QA9</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>2QA9E</entryIDChain>
<sequence>VNYGGGDVVYG</sequence>
<secondary-structure>E EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 864 CA VAL E 169 -5.925 -19.843 -31.180 1.00 7.28 C </line>
<line>ATOM 871 CA ASN E 170 -3.886 -20.108 -34.383 1.00 7.36 C </line>
<line>ATOM 879 CA TYR E 171 -0.835 -17.886 -34.354 1.00 7.51 C </line>
<line>ATOM 891 CA GLY E 172 0.229 -19.104 -37.795 1.00 7.53 C </line>
<line>ATOM 895 CA GLY E 173 3.300 -21.078 -38.866 1.00 6.03 C </line>
<line>ATOM 899 CA GLY E 174 2.203 -24.293 -37.027 1.00 6.01 C </line>
<line>ATOM 903 CA ASP E 175 1.834 -22.531 -33.686 1.00 5.99 C </line>
<line>ATOM 911 CA VAL E 176 -1.670 -23.424 -32.555 1.00 5.82 C </line>
<line>ATOM 918 CA VAL E 177 -2.646 -23.275 -28.881 1.00 5.45 C </line>
<line>ATOM 928 CA TYR E 178 -5.673 -25.068 -27.370 1.00 5.53 C </line>
<line>ATOM 940 CA GLY E 179 -7.646 -24.852 -24.254 1.00 3.90 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR VAL VAL ASP GLY GLY GLY TYR ASN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.72 6.47 5.27 5.73 8.59 10.96 12.07 9.07 6.31 3.81 </line>
<line>ASN CA 11.80 8.77 6.47 4.39 6.25 7.85 8.53 5.44 3.77 </line>
<line>TYR CA 14.03 11.12 7.89 5.88 5.40 7.58 6.90 3.80 </line>
<line>GLY CA 16.69 13.38 10.25 7.05 5.59 5.60 3.80 </line>
<line>GLY CA 18.64 15.12 11.83 8.37 5.58 3.86 </line>
<line>GLY CA 16.14 12.49 9.53 5.98 3.80 </line>
<line>ASP CA 13.57 10.13 6.61 3.79 </line>
<line>VAL CA 10.33 6.75 3.80 </line>
<line>VAL CA 6.99 3.83 </line>
<line>TYR CA 3.69 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 283</line>
<line>ASN CA 220</line>
<line>TYR CA 227</line>
<line>GLY CA 144</line>
<line>GLY CA 107</line>
<line>GLY CA 131</line>
<line>ASP CA 212</line>
<line>VAL CA 229</line>
<line>VAL CA 313</line>
<line>TYR CA 289</line>
<line>GLY CA 316</line>
</n14>
</entryChain>
<parallel>
<x>14.812999725341797</x>
<y>57.74399948120117</y>
<z>59.65299987792969</z>
</parallel>
<rotation>
<x>-0.3269999921321869</x>
<y>-0.9369999766349792</y>
<z>0.11900000274181366</z>
<x>-0.17499999701976776</x>
<y>-0.06300000101327896</y>
<z>-0.9819999933242798</z>
<x>0.9290000200271606</x>
<y>-0.34200000762939453</y>
<z>-0.14399999380111694</z>
</rotation>
<rmsd>1.311493992805481</rmsd>
<dmax>2.3407769203186035</dmax>
</indel>