NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BU1A-1OOTA
confEVID 1BU1A-1OOTA
pdbIDA 1BU1
pdbIDB 1OOT
pdbChainA A
pdbChainB A
identity 0.372900009155273
indelSize 2
alignment <alignment>
<seq1>-IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVARVD</seq1>
<seq2>SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV-</seq2>
<ss_1>- EEEE EEEE EEEEE---EEEEEE EEEEEEE EEE </ss_1>
<ss_2> EEE EEEE EEEEEEE-- EEEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BU1A</entryIDChain>
<sequence>EESGE---WWKAR</sequence>
<secondary-structure>EEEEE---EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 230 CA GLU A 109 10.551 12.312 25.105 1.00 44.31 C </line>
<line>ATOM 239 CA GLU A 110 10.721 15.150 27.625 1.00 41.78 C </line>
<line>ATOM 248 CA SER A 111 11.430 13.083 30.716 1.00 29.12 C </line>
<line>ATOM 254 CA GLY A 112 13.036 15.468 33.207 1.00 22.91 C </line>
<line>ATOM 258 CA GLU A 113 16.768 15.964 33.531 1.00 17.85 C </line>
<line>ATOM 267 CA TRP A 114 17.310 13.642 30.609 1.00 13.23 C </line>
<line>ATOM 281 CA TRP A 115 15.395 13.799 27.359 1.00 20.03 C </line>
<line>ATOM 295 CA LYS A 116 15.379 11.183 24.630 1.00 21.22 C </line>
<line>ATOM 304 CA ALA A 117 16.447 12.655 21.281 1.00 18.51 C </line>
<line>ATOM 309 CA ARG A 118 17.173 12.057 17.589 1.00 10.69 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ALA LYS TRP TRP GLU GLY SER GLU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 10.02 7.04 4.98 5.55 8.82 11.09 9.04 5.73 3.80 </line>
<line>GLU CA 12.33 8.90 6.81 4.87 7.39 8.49 6.05 3.79 </line>
<line>SER CA 14.36 10.69 7.50 5.24 5.91 6.69 3.80 </line>
<line>GLY CA 16.51 12.72 9.87 6.52 5.32 3.78 </line>
<line>GLU CA 16.42 12.69 10.20 6.68 3.77 </line>
<line>TRP CA 13.12 9.42 6.75 3.78 </line>
<line>TRP CA 10.08 6.27 3.78 </line>
<line>LYS CA 7.32 3.81 </line>
<line>ALA CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 223</line>
<line>GLU CA 224</line>
<line>SER CA 174</line>
<line>GLY CA 165</line>
<line>GLU CA 200</line>
<line>TRP CA 282</line>
<line>TRP CA 316</line>
<line>LYS CA 328</line>
<line>ALA CA 359</line>
<line>ARG CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>KKSDSQNDWWTGR</sequence>
<secondary-structure> EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 257 CA LYS A 30 30.764 11.959 -5.173 1.00 13.36 C </line>
<line>ATOM 266 CA LYS A 31 33.102 11.629 -2.265 1.00 15.36 C </line>
<line>ATOM 275 CA SER A 32 36.224 13.447 -1.131 1.00 14.67 C </line>
<line>ATOM 281 CA ASP A 33 39.287 12.345 0.823 1.00 17.32 C </line>
<line>ATOM 289 CA SER A 34 37.729 13.385 4.149 1.00 14.38 C </line>
<line>ATOM 295 CA GLN A 35 34.703 12.088 5.911 1.00 15.60 C </line>
<line>ATOM 304 CA ASN A 36 34.223 15.582 7.383 1.00 13.71 C </line>
<line>ATOM 312 CA ASP A 37 33.352 17.118 4.040 1.00 12.06 C </line>
<line>ATOM 321 CA ATRP A 38 30.044 17.295 2.367 0.50 9.55 C </line>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLY THR TRP TRP ASP ASN GLN SER ASP SER LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 10.25 6.85 4.91 5.82 9.27 10.87 13.52 11.76 11.72 10.43 6.95 3.75 </line>
<line>LYS CA 12.39 8.74 6.59 5.04 7.93 8.36 10.49 8.34 8.10 6.95 3.79 </line>
<line>SER CA 15.88 12.15 9.42 6.84 8.08 6.96 9.00 7.33 5.49 3.80 </line>
<line>ASP CA 19.03 15.36 12.94 10.00 10.60 8.27 8.90 6.85 3.82 </line>
<line>SER CA 18.75 15.18 12.82 9.26 8.80 5.75 5.25 3.73 </line>
<line>GLN CA 16.77 13.51 11.81 8.22 7.83 5.53 3.82 </line>
<line>ASN CA 17.98 14.78 12.61 8.85 6.75 3.78 </line>
<line>ASP CA 16.11 12.69 9.86 6.20 3.71 </line>
<line>TRP CA 12.97 9.73 6.86 3.79 </line>
<line>TRP CA 10.23 6.63 3.80 </line>
<line>THR CA 7.27 3.77 </line>
<line>GLY CA 3.76 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LYS CA 246</line>
<line>LYS CA 254</line>
<line>SER CA 192</line>
<line>ASP CA 140</line>
<line>SER CA 167</line>
<line>GLN CA 237</line>
<line>ASN CA 195</line>
<line>ASP CA 208</line>
<line>TRP CA 284</line>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
</n14>
</entryChain>
<parallel>
<x>-19.135000228881836</x>
<y>0.26499998569488525</y>
<z>29.607999801635742</z>
</parallel>
<rotation>
<x>-0.4569999873638153</x>
<y>0.12600000202655792</y>
<z>0.8809999823570251</z>
<x>0.4390000104904175</x>
<y>-0.8289999961853027</y>
<z>0.34599998593330383</z>
<x>0.7739999890327454</x>
<y>0.5450000166893005</y>
<z>0.3240000009536743</z>
</rotation>
<rmsd>1.8553839921951294</rmsd>
<dmax>3.0484769344329834</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>WTGRV--NGREG</sequence>
<secondary-structure>EEEEE-- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
<line>ATOM 384 CA VAL A 43 18.123 8.330 -1.442 1.00 10.45 C </line>
<line>ATOM 391 CA ASN A 44 14.332 8.377 -1.332 1.00 13.67 C </line>
<line>ATOM 399 CA GLY A 45 14.145 9.895 -4.799 1.00 11.79 C </line>
<line>ATOM 403 CA ARG A 46 16.115 12.989 -3.764 1.00 12.10 C </line>
<line>ATOM 414 CA GLU A 47 19.630 14.058 -4.665 1.00 12.05 C </line>
<line>ATOM 423 CA GLY A 48 21.940 16.436 -2.885 1.00 12.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ARG GLY ASN VAL ARG GLY THR TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.36 10.94 14.01 16.74 16.42 13.02 10.23 6.63 3.80 </line>
<line>THR CA 5.59 7.58 10.95 13.62 13.92 10.60 7.27 3.77 </line>
<line>GLY CA 5.72 5.83 8.51 10.53 10.56 7.04 3.76 </line>
<line>ARG CA 6.41 4.32 5.55 6.87 7.04 3.77 </line>
<line>VAL CA 9.08 6.74 5.58 5.44 3.79 </line>
<line>ASN CA 11.19 8.45 5.51 3.79 </line>
<line>GLY CA 10.35 6.89 3.81 </line>
<line>ARG CA 6.83 3.78 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
<line>VAL CA 274</line>
<line>ASN CA 200</line>
<line>GLY CA 152</line>
<line>ARG CA 213</line>
<line>GLU CA 243</line>
<line>GLY CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BU1A</entryIDChain>
<sequence>WKARSLATRKEG</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 281 CA TRP A 115 15.395 13.799 27.359 1.00 20.03 C </line>
<line>ATOM 295 CA LYS A 116 15.379 11.183 24.630 1.00 21.22 C </line>
<line>ATOM 304 CA ALA A 117 16.447 12.655 21.281 1.00 18.51 C </line>
<line>ATOM 309 CA ARG A 118 17.173 12.057 17.589 1.00 10.69 C </line>
<line>ATOM 320 CA SER A 119 20.137 13.989 16.162 1.00 8.02 C </line>
<line>ATOM 326 CA LEU A 120 19.688 15.768 12.833 1.00 8.11 C </line>
<line>ATOM 334 CA ALA A 121 23.503 16.124 12.559 1.00 9.99 C </line>
<line>ATOM 339 CA THR A 122 24.611 12.538 13.226 1.00 11.47 C </line>
<line>ATOM 346 CA ARG A 123 21.296 10.630 12.914 1.00 15.03 C </line>
<line>ATOM 357 CA LYS A 124 21.946 8.756 16.165 1.00 14.95 C </line>
<line>ATOM 366 CA GLU A 125 19.559 8.577 19.135 1.00 16.20 C </line>
<line>ATOM 375 CA GLY A 126 20.062 8.652 22.897 1.00 19.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU LYS ARG THR ALA LEU SER ARG ALA LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.26 10.59 13.92 15.92 16.92 17.03 15.27 12.16 10.08 6.27 3.78 </line>
<line>LYS CA 5.60 7.38 10.99 13.14 14.73 15.37 13.37 10.11 7.32 3.81 </line>
<line>ALA CA 5.63 5.56 8.46 9.88 11.47 11.74 9.57 6.45 3.81 </line>
<line>ARG CA 6.94 4.49 5.98 6.39 8.64 9.05 6.54 3.82 </line>
<line>SER CA 8.59 6.20 5.54 4.81 5.54 5.37 3.80 </line>
<line>LEU CA 12.33 9.56 8.09 5.38 5.90 3.84 </line>
<line>ALA CA 13.21 10.76 8.35 5.93 3.81 </line>
<line>THR CA 11.37 8.73 5.48 3.84 </line>
<line>ARG CA 10.25 6.78 3.81 </line>
<line>LYS CA 6.99 3.81 </line>
<line>GLU CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 316</line>
<line>LYS CA 328</line>
<line>ALA CA 359</line>
<line>ARG CA 298</line>
<line>SER CA 299</line>
<line>LEU CA 223</line>
<line>ALA CA 208</line>
<line>THR CA 203</line>
<line>ARG CA 185</line>
<line>LYS CA 232</line>
<line>GLU CA 284</line>
<line>GLY CA 322</line>
</n14>
</entryChain>
<parallel>
<x>1.5110000371932983</x>
<y>-0.7739999890327454</y>
<z>-21.20199966430664</z>
</parallel>
<rotation>
<x>-0.6970000267028809</x>
<y>0.2669999897480011</y>
<z>0.6650000214576721</z>
<x>0.2750000059604645</x>
<y>-0.7570000290870667</y>
<z>0.5929999947547913</z>
<x>0.6620000004768372</x>
<y>0.5960000157356262</y>
<z>0.45399999618530273</z>
</rotation>
<rmsd>0.7425510287284851</rmsd>
<dmax>1.3003309965133667</dmax>
</indel>