NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BUCA-1EGDD
confEVID 1BUCA-1EGDD
pdbIDA 1BUC
pdbIDB 1EGD
pdbChainA A
pdbChainB D
identity 0.39640000462532
indelSize 3
alignment <alignment>
<seq1>--MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKS---KGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR----</seq1>
<seq2>LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGL---GLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG-DEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYKN</seq2>
<ss_1>-- HHHHHHHHHHHHHIIIII HHHHHH EEHHHHHHHGGG GGG HHHHHHHHHHHH HHHHHHHHHHIIIIHHHHH HHHIIIIHHHHH EEE GGG EEEEE EEEEEEEE EEE EEEEEEEE --- EEEEEE EEE EEEEEEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHH HHHH HHHHHHHHHHHH ----</ss_1>
<ss_2> HHHHHHHHHHHHHIIIIIHHHHHHHHHH HHHHHHHH --- HHHHHHHHHHHH HHHHHHHHHHH-HHHHHHH HHHHHHHHHHHHH EEE GGG EEEE -EEEEEEEEE EEE EEEEEEEE EEEEEE EEE EEEEEEE EEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEE EEEGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHGGGG HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BUCA</entryIDChain>
<sequence>MTDKS---KGNHG</sequence>
<secondary-structure>E --- </secondary-structure>
<atom-coordinate>
<line>ATOM 1318 CA MET A 175 87.837 13.598 94.040 1.00 24.01 C </line>
<line>ATOM 1326 CA THR A 176 90.572 16.170 93.484 1.00 29.91 C </line>
<line>ATOM 1333 CA ASP A 177 92.715 14.327 96.015 1.00 34.49 C </line>
<line>ATOM 1341 CA LYS A 178 92.085 10.719 97.020 1.00 41.56 C </line>
<line>ATOM 1350 CA SER A 179 94.138 10.459 100.194 1.00 45.83 C </line>
<line>ATOM 1356 CA LYS A 180 91.904 12.702 102.153 1.00 43.41 C </line>
<line>ATOM 1365 CA GLY A 181 88.633 11.348 100.827 1.00 44.33 C </line>
<line>ATOM 1369 CA ASN A 182 86.051 13.121 102.927 1.00 47.34 C </line>
<line>ATOM 1377 CA HIS A 183 88.520 16.167 102.910 1.00 43.53 C </line>
<line>ATOM 1387 CA GLY A 184 89.411 16.066 99.206 1.00 37.62 C </line>
</atom-coordinate>
<distance-map>
<line> GLY HIS ASN GLY LYS SER LYS ASP THR MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 5.94 9.26 9.08 7.19 9.12 9.35 5.93 5.31 3.80 </line>
<line>THR CA 5.84 9.65 10.90 9.00 9.43 9.51 6.67 3.79 </line>
<line>ASP CA 4.91 8.28 9.68 6.98 6.40 5.87 3.80 </line>
<line>LYS CA 6.37 8.78 8.78 5.18 5.51 3.79 </line>
<line>SER CA 7.40 8.46 8.94 5.61 3.72 </line>
<line>LYS CA 5.12 4.90 5.92 3.78 </line>
<line>GLY CA 5.05 5.25 3.77 </line>
<line>ASN CA 5.81 3.92 </line>
<line>HIS CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>MET CA 395</line>
<line>THR CA 356</line>
<line>ASP CA 260</line>
<line>LYS CA 226</line>
<line>SER CA 158</line>
<line>LYS CA 183</line>
<line>GLY CA 245</line>
<line>ASN CA 264</line>
<line>HIS CA 244</line>
<line>GLY CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1EGDD</entryIDChain>
<sequence>RSDPDPKAPANKA</sequence>
<secondary-structure>E </secondary-structure>
<atom-coordinate>
<line>ATOM 10295 CA ARG D 181 166.293 10.881 77.517 1.00 33.20 C </line>
<line>ATOM 10306 CA SER D 182 167.780 7.424 76.999 1.00 35.97 C </line>
<line>ATOM 10312 CA ASP D 183 168.993 7.858 73.376 1.00 37.03 C </line>
<line>ATOM 10320 CA PRO D 184 172.283 9.805 73.853 1.00 40.50 C </line>
<line>ATOM 10327 CA ASP D 185 172.387 10.629 70.151 1.00 44.27 C </line>
<line>ATOM 10335 CA PRO D 186 171.710 14.418 70.208 1.00 45.27 C </line>
<line>ATOM 10342 CA LYS D 187 169.711 13.981 67.010 1.00 40.76 C </line>
<line>ATOM 10351 CA ALA D 188 167.448 11.287 68.382 1.00 38.38 C </line>
<line>ATOM 10356 CA PRO D 189 163.891 12.224 67.274 1.00 38.44 C </line>
<line>ATOM 10363 CA ALA D 190 161.538 13.081 70.238 1.00 41.41 C </line>
<line>ATOM 10368 CA ASN D 191 159.669 10.097 69.054 1.00 46.20 C </line>
<line>ATOM 10376 CA LYS D 192 162.491 7.696 69.735 1.00 46.76 C </line>
<line>ATOM 10385 CA ALA D 193 164.690 9.368 72.381 1.00 40.45 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS ASN ALA PRO ALA LYS PRO ASP PRO ASP SER ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 5.59 9.23 10.78 8.97 10.61 9.22 11.48 9.76 9.56 7.10 5.79 3.80 </line>
<line>SER CA 5.89 8.99 11.66 10.80 11.52 9.45 12.10 10.51 8.85 5.99 3.85 </line>
<line>ASP CA 4.67 7.45 10.52 9.63 9.07 6.25 8.86 7.78 5.44 3.85 </line>
<line>PRO CA 7.75 10.83 13.50 11.80 10.93 7.45 8.42 5.91 3.79 </line>
<line>ASP CA 8.11 10.33 12.78 11.12 9.11 5.29 5.32 3.85 </line>
<line>PRO CA 8.92 11.42 12.84 10.26 8.63 5.59 3.80 </line>
<line>LYS CA 8.68 9.95 10.96 8.83 6.09 3.78 </line>
<line>ALA CA 5.22 6.27 7.90 6.45 3.84 </line>
<line>PRO CA 5.91 5.34 5.05 3.88 </line>
<line>ALA CA 5.32 5.49 3.71 </line>
<line>ASN CA 6.07 3.77 </line>
<line>LYS CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 409</line>
<line>SER CA 367</line>
<line>ASP CA 282</line>
<line>PRO CA 233</line>
<line>ASP CA 169</line>
<line>PRO CA 167</line>
<line>LYS CA 149</line>
<line>ALA CA 203</line>
<line>PRO CA 197</line>
<line>ALA CA 267</line>
<line>ASN CA 238</line>
<line>LYS CA 246</line>
<line>ALA CA 308</line>
</n14>
</entryChain>
<parallel>
<x>-76.11199951171875</x>
<y>2.555999994277954</y>
<z>26.024999618530273</z>
</parallel>
<rotation>
<x>0.8550000190734863</x>
<y>-0.31700000166893005</y>
<z>-0.41100001335144043</z>
<x>-0.3269999921321869</x>
<y>-0.9440000057220459</y>
<z>0.04699999839067459</z>
<x>-0.40299999713897705</x>
<y>0.09399999678134918</y>
<z>-0.9100000262260437</z>
</rotation>
<rmsd>2.497270107269287</rmsd>
<dmax>3.8053081035614014</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1EGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1EGDD</entryIDChain>
<sequence>IEGNS-LGQMP</sequence>
<secondary-structure>HHHHH-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 9660 CA ILE D 98 145.014 17.441 94.476 1.00 18.33 C </line>
<line>ATOM 9668 CA GLU D 99 145.326 17.785 90.697 1.00 25.77 C </line>
<line>ATOM 9677 CA GLY D 100 148.988 16.819 90.799 1.00 28.90 C </line>
<line>ATOM 9681 CA ASN D 101 147.744 13.288 91.523 1.00 28.24 C </line>
<line>ATOM 9689 CA SER D 102 145.603 12.777 88.422 1.00 28.76 C </line>
<line>ATOM 9695 CA LEU D 103 148.366 14.347 86.363 1.00 28.96 C </line>
<line>ATOM 9703 CA GLY D 104 150.920 11.957 87.804 1.00 29.14 C </line>
<line>ATOM 9707 CA GLN D 105 148.525 9.048 87.298 1.00 28.22 C </line>
<line>ATOM 9716 CA MET D 106 147.517 9.845 83.716 1.00 29.75 C </line>
<line>ATOM 9724 CA PRO D 107 150.744 8.431 82.201 1.00 26.45 C </line>
</atom-coordinate>
<distance-map>
<line> PRO MET GLN GLY LEU SER ASN GLY GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 16.27 13.41 11.59 10.46 9.31 7.66 5.78 5.45 3.81 </line>
<line>GLU CA 13.75 10.80 9.91 8.58 6.31 5.51 5.17 3.79 </line>
<line>GLY CA 12.14 10.05 8.54 6.03 5.12 5.78 3.81 </line>
<line>ASN CA 10.93 8.54 6.04 5.07 5.30 3.80 </line>
<line>SER CA 9.17 5.87 4.87 5.42 3.79 </line>
<line>LEU CA 7.61 5.29 5.38 3.78 </line>
<line>GLY CA 6.62 5.72 3.80 </line>
<line>GLN CA 5.59 3.81 </line>
<line>MET CA 3.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ILE CA 542</line>
<line>GLU CA 566</line>
<line>GLY CA 543</line>
<line>ASN CA 547</line>
<line>SER CA 566</line>
<line>LEU CA 530</line>
<line>GLY CA 559</line>
<line>GLN CA 548</line>
<line>MET CA 496</line>
<line>PRO CA 473</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BUCA</entryIDChain>
<sequence>LSATVSLCANP</sequence>
<secondary-structure>HHHHIIIIHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 693 CA LEU A 90 61.498 21.659 91.027 1.00 10.72 C </line>
<line>ATOM 701 CA SER A 91 62.843 20.861 94.501 1.00 7.83 C </line>
<line>ATOM 707 CA ALA A 92 66.018 19.475 92.941 1.00 7.38 C </line>
<line>ATOM 712 CA THR A 93 66.669 22.702 91.019 1.00 11.32 C </line>
<line>ATOM 719 CA VAL A 94 66.100 25.236 93.778 1.00 7.23 C </line>
<line>ATOM 726 CA SER A 95 67.425 23.236 96.743 1.00 9.33 C </line>
<line>ATOM 732 CA LEU A 96 70.189 21.190 95.153 1.00 6.62 C </line>
<line>ATOM 740 CA CYS A 97 71.531 23.606 92.529 1.00 10.71 C </line>
<line>ATOM 746 CA ALA A 98 70.438 27.255 92.753 1.00 10.33 C </line>
<line>ATOM 751 CA ASN A 99 71.077 27.124 96.501 1.00 8.02 C </line>
<line>ATOM 759 CA PRO A 100 74.731 26.048 96.446 1.00 3.43 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASN ALA CYS LEU SER VAL THR ALA SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.96 12.31 10.69 10.33 9.63 8.38 6.45 5.28 5.37 3.81 </line>
<line>SER CA 13.12 10.54 10.08 9.32 7.38 5.63 5.50 5.49 3.80 </line>
<line>ALA CA 11.46 9.84 8.95 6.90 5.02 5.53 5.82 3.81 </line>
<line>THR CA 10.28 8.31 6.16 5.17 5.64 5.80 3.79 </line>
<line>VAL CA 9.07 5.98 4.89 5.81 5.91 3.81 </line>
<line>SER CA 7.83 5.34 6.41 5.90 3.79 </line>
<line>LEU CA 6.78 6.15 6.53 3.81 </line>
<line>CYS CA 5.62 5.33 3.82 </line>
<line>ALA CA 5.79 3.80 </line>
<line>ASN CA 3.81 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 581</line>
<line>SER CA 567</line>
<line>ALA CA 563</line>
<line>THR CA 567</line>
<line>VAL CA 576</line>
<line>SER CA 546</line>
<line>LEU CA 541</line>
<line>CYS CA 567</line>
<line>ALA CA 546</line>
<line>ASN CA 522</line>
<line>PRO CA 493</line>
</n14>
</entryChain>
<parallel>
<x>80.6500015258789</x>
<y>-8.5649995803833</y>
<z>-3.2899999618530273</z>
</parallel>
<rotation>
<x>0.7369999885559082</x>
<y>-0.40299999713897705</y>
<z>-0.5419999957084656</z>
<x>-0.5230000019073486</x>
<y>-0.8479999899864197</y>
<z>-0.08100000023841858</z>
<x>-0.4269999861717224</x>
<y>0.3440000116825104</y>
<z>-0.8360000252723694</z>
</rotation>
<rmsd>0.8719720244407654</rmsd>
<dmax>1.6133249998092651</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1EGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1EGDD</entryIDChain>
<sequence>AEKKG-DEYII</sequence>
<secondary-structure>EEE -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 10051 CA ALA D 151 168.527 7.154 81.730 1.00 36.99 C </line>
<line>ATOM 10056 CA GLU D 152 170.790 4.236 80.836 1.00 42.73 C </line>
<line>ATOM 10065 CA LYS D 153 169.818 0.570 80.643 1.00 45.39 C </line>
<line>ATOM 10074 CA LYS D 154 172.486 -1.404 82.417 1.00 46.21 C </line>
<line>ATOM 10083 CA GLY D 155 171.202 -4.968 82.319 1.00 44.81 C </line>
<line>ATOM 10087 CA ASP D 156 167.791 -5.669 83.827 1.00 45.64 C </line>
<line>ATOM 10095 CA GLU D 157 167.665 -2.098 85.124 1.00 41.66 C </line>
<line>ATOM 10104 CA TYR D 158 167.979 1.555 84.319 1.00 34.10 C </line>
<line>ATOM 10116 CA ILE D 159 170.400 3.882 86.091 1.00 32.56 C </line>
<line>ATOM 10124 CA ILE D 160 169.068 7.430 86.000 1.00 32.66 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ILE TYR GLU ASP GLY LYS LYS GLU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.31 5.76 6.19 9.89 13.01 12.43 9.45 6.80 3.80 </line>
<line>GLU CA 6.31 5.28 5.22 8.26 10.77 9.33 6.10 3.80 </line>
<line>LYS CA 8.74 6.40 4.23 5.64 7.29 5.95 3.76 </line>
<line>LYS CA 10.13 6.77 5.72 5.57 6.50 3.79 </line>
<line>GLY CA 13.11 9.65 7.55 5.35 3.79 </line>
<line>ASP CA 13.34 10.16 7.24 3.80 </line>
<line>GLU CA 9.67 6.65 3.75 </line>
<line>TYR CA 6.21 3.80 </line>
<line>ILE CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ALA CA 408</line>
<line>GLU CA 311</line>
<line>LYS CA 262</line>
<line>LYS CA 181</line>
<line>GLY CA 142</line>
<line>ASP CA 159</line>
<line>GLU CA 242</line>
<line>TYR CA 328</line>
<line>ILE CA 314</line>
<line>ILE CA 404</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BUCA</entryIDChain>
<sequence>ATKNDDGTYTL</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1089 CA ALA A 144 89.175 15.927 88.819 1.00 25.80 C </line>
<line>ATOM 1094 CA THR A 145 92.723 16.200 87.511 1.00 33.89 C </line>
<line>ATOM 1101 CA LYS A 146 94.329 19.642 87.286 1.00 28.10 C </line>
<line>ATOM 1110 CA ASN A 147 95.969 20.729 84.016 1.00 35.73 C </line>
<line>ATOM 1118 CA ASP A 148 98.683 23.274 83.147 1.00 30.32 C </line>
<line>ATOM 1126 CA ASP A 149 95.937 25.643 81.988 1.00 27.99 C </line>
<line>ATOM 1134 CA GLY A 150 94.710 25.840 85.587 1.00 23.85 C </line>
<line>ATOM 1138 CA THR A 151 91.977 23.739 84.027 1.00 30.45 C </line>
<line>ATOM 1145 CA TYR A 152 90.378 20.514 85.268 1.00 25.47 C </line>
<line>ATOM 1157 CA THR A 153 89.617 17.226 83.558 1.00 16.78 C </line>
<line>ATOM 1164 CA LEU A 154 86.733 15.225 85.017 1.00 15.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR TYR THR GLY ASP ASP ASN LYS THR ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.57 5.44 5.92 9.58 11.80 13.67 13.29 9.61 6.54 3.79 </line>
<line>THR CA 6.56 5.13 5.40 8.34 10.03 11.40 10.23 6.58 3.80 </line>
<line>LYS CA 9.08 6.48 4.52 5.74 6.44 8.16 7.02 3.82 </line>
<line>ASN CA 10.80 7.27 5.73 5.00 5.49 5.32 3.82 </line>
<line>ASP CA 14.53 10.91 9.00 6.78 5.32 3.81 </line>
<line>ASP CA 14.23 10.64 8.24 4.84 3.81 </line>
<line>GLY CA 13.29 10.21 6.87 3.78 </line>
<line>THR CA 10.05 6.94 3.81 </line>
<line>TYR CA 6.43 3.78 </line>
<line>THR CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ALA CA 404</line>
<line>THR CA 301</line>
<line>LYS CA 246</line>
<line>ASN CA 177</line>
<line>ASP CA 119</line>
<line>ASP CA 136</line>
<line>GLY CA 166</line>
<line>THR CA 235</line>
<line>TYR CA 326</line>
<line>THR CA 323</line>
<line>LEU CA 405</line>
</n14>
</entryChain>
<parallel>
<x>76.03900146484375</x>
<y>-20.81100082397461</y>
<z>-3.055999994277954</z>
</parallel>
<rotation>
<x>0.5680000185966492</x>
<y>-0.593999981880188</y>
<z>-0.5699999928474426</z>
<x>-0.5960000157356262</x>
<y>-0.7739999890327454</y>
<z>0.21199999749660492</z>
<x>-0.5669999718666077</x>
<y>0.21899999678134918</y>
<z>-0.7940000295639038</z>
</rotation>
<rmsd>0.7836480140686035</rmsd>
<dmax>1.4138180017471313</dmax>
</indel>