NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BUCB-3MDEA
confEVID 1BUCB-3MDEA
pdbIDA 1BUC
pdbIDB 3MDE
pdbChainA B
pdbChainB A
identity 0.401600003242493
indelSize 3
alignment <alignment>
<seq1>-MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKS---KGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR---</seq1>
<seq2>GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGL---GLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG-DEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK</seq2>
<ss_1>- HHHHHHHHHHHHHIIIIHHHHHHHHHH EEHHHHHHHH GGG HHHHHHHHHHHHHH HHHHHHHHHHIIIIHHHHH HHHIIIIHHHHH EEE EEEEE EEEEEEEE EEE EEEEEEEE --- EEEEEE EEE EEEEEEE EEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH GGGGG HHHHHHGGGG HHHHHHHHHHHH ---</ss_1>
<ss_2> HHHHHHHHHHHHHIIIIIHHHHHHHHHH HHHHHHHH --- HHHHHHHHHHHH HHHHHHHHHHH-HHHHHHH HHHHHHHHHHH EEE GGG EEEEEE-EEEEEEEEE EEE EEEEEEEE EEEEEE EEEEEEE EEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEE EEEGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH GGGG HHHHHHGGGG HHHHHHHHHHHGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BUCB</entryIDChain>
<sequence>MTDKS---KGNHG</sequence>
<secondary-structure>E --- </secondary-structure>
<atom-coordinate>
<line>ATOM 4228 CA MET B 175 21.928 17.239 136.260 1.00 22.64 C </line>
<line>ATOM 4236 CA THR B 176 19.354 19.982 136.723 1.00 27.28 C </line>
<line>ATOM 4243 CA ASP B 177 17.167 18.064 134.267 1.00 26.37 C </line>
<line>ATOM 4251 CA LYS B 178 17.465 14.372 133.419 1.00 41.56 C </line>
<line>ATOM 4260 CA SER B 179 15.396 14.355 130.223 1.00 45.83 C </line>
<line>ATOM 4266 CA LYS B 180 17.417 16.687 128.095 1.00 43.41 C </line>
<line>ATOM 4275 CA GLY B 181 20.556 14.982 129.392 1.00 44.33 C </line>
<line>ATOM 4279 CA ASN B 182 23.311 16.421 127.242 1.00 47.34 C </line>
<line>ATOM 4287 CA HIS B 183 21.302 19.699 127.309 1.00 43.53 C </line>
<line>ATOM 4297 CA GLY B 184 20.537 19.570 131.048 1.00 37.62 C </line>
</atom-coordinate>
<distance-map>
<line> GLY HIS ASN GLY LYS SER LYS ASP THR MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 5.88 9.30 9.16 7.36 9.34 9.35 6.02 5.23 3.79 </line>
<line>THR CA 5.81 9.62 10.87 8.95 9.44 9.46 6.78 3.81 </line>
<line>ASP CA 4.90 8.26 9.48 6.69 6.33 5.77 3.80 </line>
<line>LYS CA 6.49 8.97 8.75 5.11 5.81 3.81 </line>
<line>SER CA 7.37 8.48 8.71 5.26 3.75 </line>
<line>LYS CA 5.17 4.98 5.96 3.80 </line>
<line>GLY CA 4.88 5.21 3.78 </line>
<line>ASN CA 5.67 3.85 </line>
<line>HIS CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>MET CA 396</line>
<line>THR CA 352</line>
<line>ASP CA 262</line>
<line>LYS CA 227</line>
<line>SER CA 161</line>
<line>LYS CA 183</line>
<line>GLY CA 247</line>
<line>ASN CA 260</line>
<line>HIS CA 238</line>
<line>GLY CA 299</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3MDE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3MDEA</entryIDChain>
<sequence>RSDPDPKAPASKA</sequence>
<secondary-structure>E </secondary-structure>
<atom-coordinate>
<line>ATOM 1318 CA ARG A 181 54.036 1.572 -24.826 1.00 20.76 C </line>
<line>ATOM 1329 CA SER A 182 56.892 3.394 -26.566 1.00 21.08 C </line>
<line>ATOM 1335 CA ASP A 183 59.167 3.873 -23.535 1.00 23.36 C </line>
<line>ATOM 1343 CA PRO A 184 60.786 0.536 -22.671 1.00 25.25 C </line>
<line>ATOM 1350 CA ASP A 185 62.076 1.837 -19.317 1.00 27.85 C </line>
<line>ATOM 1358 CA PRO A 186 59.865 0.309 -16.610 1.00 28.72 C </line>
<line>ATOM 1365 CA LYS A 187 60.515 3.285 -14.342 1.00 29.73 C </line>
<line>ATOM 1374 CA ALA A 188 59.242 5.681 -17.016 1.00 27.90 C </line>
<line>ATOM 1379 CA PRO A 189 56.203 7.688 -15.913 1.00 26.45 C </line>
<line>ATOM 1386 CA ALA A 190 52.792 7.163 -17.495 1.00 24.76 C </line>
<line>ATOM 1391 CA SER A 191 52.760 10.721 -18.859 1.00 24.68 C </line>
<line>ATOM 1397 CA LYS A 192 55.746 9.925 -21.079 1.00 26.03 C </line>
<line>ATOM 1406 CA ALA A 193 55.750 6.168 -21.680 1.00 22.01 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS SER ALA PRO ALA LYS PRO ASP PRO ASP SER ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 5.83 9.31 11.00 9.30 11.02 10.25 12.44 10.15 9.75 7.16 5.77 3.81 </line>
<line>SER CA 5.73 8.61 11.41 10.64 11.51 10.10 12.75 10.84 9.05 6.21 3.82 </line>
<line>ASP CA 4.51 7.37 10.48 9.38 9.02 6.77 9.31 7.82 5.51 3.81 </line>
<line>PRO CA 7.62 10.77 13.52 11.60 10.85 7.80 8.78 6.13 3.82 </line>
<line>ASP CA 8.02 10.42 12.88 10.86 8.96 5.30 5.41 3.81 </line>
<line>PRO CA 8.77 11.38 12.80 9.89 8.27 5.42 3.80 </line>
<line>LYS CA 9.21 10.59 11.65 9.20 6.36 3.81 </line>
<line>ALA CA 5.85 6.84 8.42 6.64 3.81 </line>
<line>PRO CA 5.98 5.65 5.45 3.80 </line>
<line>ALA CA 5.22 5.40 3.81 </line>
<line>SER CA 6.13 3.81 </line>
<line>LYS CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 414</line>
<line>SER CA 374</line>
<line>ASP CA 282</line>
<line>PRO CA 236</line>
<line>ASP CA 175</line>
<line>PRO CA 164</line>
<line>LYS CA 134</line>
<line>ALA CA 175</line>
<line>PRO CA 195</line>
<line>ALA CA 265</line>
<line>SER CA 244</line>
<line>LYS CA 254</line>
<line>ALA CA 313</line>
</n14>
</entryChain>
<parallel>
<x>-37.76499938964844</x>
<y>11.914999961853027</y>
<z>153.10000610351562</z>
</parallel>
<rotation>
<x>-0.9819999933242798</x>
<y>0.19099999964237213</y>
<z>-0.004999999888241291</z>
<x>0.14000000059604645</x>
<y>0.7009999752044678</y>
<z>-0.6990000009536743</z>
<x>-0.12999999523162842</x>
<y>-0.6869999766349792</y>
<z>-0.7149999737739563</z>
</rotation>
<rmsd>2.5281929969787598</rmsd>
<dmax>3.756956100463867</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3MDE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3MDEA</entryIDChain>
<sequence>IEANT-LGQVP</sequence>
<secondary-structure>HHHHH-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 679 CA ILE A 98 27.503 4.101 -32.665 1.00 14.99 C </line>
<line>ATOM 687 CA GLU A 99 29.308 5.492 -29.614 1.00 17.25 C </line>
<line>ATOM 696 CA ALA A 100 32.411 3.379 -30.259 1.00 13.66 C </line>
<line>ATOM 701 CA ASN A 101 32.811 5.583 -33.354 1.00 12.60 C </line>
<line>ATOM 709 CA THR A 102 32.881 8.796 -31.289 1.00 13.74 C </line>
<line>ATOM 716 CA LEU A 103 35.363 7.122 -28.950 1.00 14.45 C </line>
<line>ATOM 724 CA GLY A 104 37.967 6.440 -31.660 1.00 13.56 C </line>
<line>ATOM 728 CA GLN A 105 37.391 9.873 -33.220 1.00 14.36 C </line>
<line>ATOM 737 CA VAL A 106 37.874 12.048 -30.130 1.00 15.64 C </line>
<line>ATOM 744 CA PRO A 107 41.594 11.247 -29.749 1.00 16.23 C </line>
</atom-coordinate>
<distance-map>
<line> PRO VAL GLN GLY LEU THR ASN ALA GLU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 16.07 13.31 11.46 10.77 9.20 7.27 5.55 5.51 3.81 </line>
<line>GLU CA 13.57 10.80 9.88 8.95 6.31 5.15 5.13 3.81 </line>
<line>ALA CA 12.10 10.25 8.70 6.50 4.94 5.53 3.82 </line>
<line>ASN CA 11.06 8.82 6.28 5.49 5.32 3.82 </line>
<line>THR CA 9.18 6.07 5.02 5.62 3.80 </line>
<line>LEU CA 7.52 5.65 5.47 3.82 </line>
<line>GLY CA 6.32 5.81 3.81 </line>
<line>GLN CA 5.62 3.81 </line>
<line>VAL CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ILE CA 548</line>
<line>GLU CA 556</line>
<line>ALA CA 555</line>
<line>ASN CA 544</line>
<line>THR CA 570</line>
<line>LEU CA 534</line>
<line>GLY CA 555</line>
<line>GLN CA 552</line>
<line>VAL CA 505</line>
<line>PRO CA 475</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BUCB</entryIDChain>
<sequence>LSATVSLCANP</sequence>
<secondary-structure>HHHHIIIIHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3603 CA LEU B 90 49.242 22.330 138.778 1.00 13.04 C </line>
<line>ATOM 3611 CA SER B 91 47.613 21.753 135.385 1.00 11.55 C </line>
<line>ATOM 3617 CA ALA B 92 44.223 20.811 136.856 1.00 7.68 C </line>
<line>ATOM 3622 CA THR B 93 44.061 23.988 138.954 1.00 9.76 C </line>
<line>ATOM 3629 CA VAL B 94 44.686 26.403 136.090 1.00 9.40 C </line>
<line>ATOM 3636 CA SER B 95 43.156 24.731 133.029 1.00 10.70 C </line>
<line>ATOM 3642 CA LEU B 96 40.221 22.942 134.620 1.00 11.91 C </line>
<line>ATOM 3650 CA CYS B 97 39.157 25.157 137.519 1.00 10.85 C </line>
<line>ATOM 3656 CA ALA B 98 40.493 28.702 137.277 1.00 8.10 C </line>
<line>ATOM 3661 CA ASN B 99 39.928 28.977 133.523 1.00 17.02 C </line>
<line>ATOM 3669 CA PRO B 100 36.184 28.118 133.523 1.00 14.10 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASN ALA CYS LEU SER VAL THR ALA SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 15.22 12.59 10.93 10.55 9.95 8.71 6.68 5.44 5.58 3.81 </line>
<line>SER CA 13.21 10.71 10.13 9.36 7.53 5.86 5.54 5.51 3.81 </line>
<line>ALA CA 11.36 9.81 8.74 6.71 5.06 5.58 5.66 3.81 </line>
<line>THR CA 10.42 8.45 6.15 5.24 5.88 6.04 3.80 </line>
<line>VAL CA 9.05 5.99 4.93 5.85 5.84 3.81 </line>
<line>SER CA 7.77 5.36 6.40 6.03 3.79 </line>
<line>LEU CA 6.66 6.14 6.35 3.80 </line>
<line>CYS CA 5.79 5.58 3.80 </line>
<line>ALA CA 5.74 3.81 </line>
<line>ASN CA 3.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 576</line>
<line>SER CA 572</line>
<line>ALA CA 565</line>
<line>THR CA 560</line>
<line>VAL CA 577</line>
<line>SER CA 540</line>
<line>LEU CA 544</line>
<line>CYS CA 563</line>
<line>ALA CA 555</line>
<line>ASN CA 516</line>
<line>PRO CA 487</line>
</n14>
</entryChain>
<parallel>
<x>-10.508000373840332</x>
<y>-17.663000106811523</y>
<z>-168.31100463867188</z>
</parallel>
<rotation>
<x>-0.9869999885559082</x>
<y>0.07400000095367432</y>
<z>-0.14399999380111694</z>
<x>0.1340000033378601</x>
<y>0.8730000257492065</y>
<z>-0.46799999475479126</z>
<x>0.09099999815225601</x>
<y>-0.48100000619888306</y>
<z>-0.871999979019165</z>
</rotation>
<rmsd>0.6645600199699402</rmsd>
<dmax>1.3959269523620605</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3MDE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3MDEA</entryIDChain>
<sequence>AEKKG-DEYII</sequence>
<secondary-structure>EEEEE-EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1074 CA ALA A 151 55.766 0.434 -30.307 1.00 23.56 C </line>
<line>ATOM 1079 CA GLU A 152 59.396 0.326 -31.439 1.00 27.14 C </line>
<line>ATOM 1088 CA LYS A 153 60.838 3.092 -33.584 1.00 29.15 C </line>
<line>ATOM 1097 CA LYS A 154 62.406 1.735 -36.766 1.00 30.81 C </line>
<line>ATOM 1106 CA GLY A 155 63.640 4.617 -38.890 1.00 30.29 C </line>
<line>ATOM 1110 CA ASP A 156 60.568 6.440 -40.189 1.00 30.74 C </line>
<line>ATOM 1118 CA GLU A 157 58.014 4.008 -38.772 1.00 28.08 C </line>
<line>ATOM 1127 CA TYR A 158 56.969 2.191 -35.623 1.00 24.34 C </line>
<line>ATOM 1139 CA ILE A 159 56.741 -1.580 -35.199 1.00 21.52 C </line>
<line>ATOM 1147 CA ILE A 160 53.759 -2.602 -33.078 1.00 18.71 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ILE TYR GLU ASP GLY LYS LYS GLU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.57 5.38 5.73 9.46 12.52 12.38 9.35 6.60 3.80 </line>
<line>GLU CA 6.56 4.98 5.18 8.32 10.74 9.59 6.28 3.79 </line>
<line>LYS CA 9.10 6.42 4.47 5.98 7.41 6.19 3.80 </line>
<line>LYS CA 10.35 6.75 5.57 5.34 6.10 3.79 </line>
<line>GLY CA 13.55 9.98 7.81 5.66 3.80 </line>
<line>ASP CA 13.37 10.19 7.20 3.80 </line>
<line>GLU CA 9.71 6.75 3.78 </line>
<line>TYR CA 6.31 3.80 </line>
<line>ILE CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ALA CA 407</line>
<line>GLU CA 308</line>
<line>LYS CA 266</line>
<line>LYS CA 196</line>
<line>GLY CA 143</line>
<line>ASP CA 166</line>
<line>GLU CA 258</line>
<line>TYR CA 338</line>
<line>ILE CA 325</line>
<line>ILE CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BUC</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BUCB</entryIDChain>
<sequence>ATKNDDGTYTL</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3999 CA ALA B 144 20.756 19.394 141.434 1.00 16.29 C </line>
<line>ATOM 4004 CA THR B 145 17.270 20.386 142.532 1.00 24.00 C </line>
<line>ATOM 4011 CA LYS B 146 16.052 23.951 143.120 1.00 24.74 C </line>
<line>ATOM 4020 CA ASN B 147 14.711 25.022 146.536 1.00 27.79 C </line>
<line>ATOM 4028 CA ASP B 148 12.250 27.727 147.568 1.00 27.49 C </line>
<line>ATOM 4036 CA ASP B 149 15.313 29.712 148.671 1.00 26.27 C </line>
<line>ATOM 4044 CA GLY B 150 16.434 29.830 145.074 1.00 22.84 C </line>
<line>ATOM 4048 CA THR B 151 19.380 27.749 146.287 1.00 22.99 C </line>
<line>ATOM 4055 CA TYR B 152 20.211 24.277 144.993 1.00 20.07 C </line>
<line>ATOM 4067 CA THR B 153 20.686 20.881 146.616 1.00 17.12 C </line>
<line>ATOM 4074 CA LEU B 154 23.232 18.389 145.285 1.00 21.39 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR TYR THR GLY ASP ASP ASN LYS THR ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.69 5.39 6.07 9.76 11.87 13.73 13.39 9.71 6.76 3.79 </line>
<line>THR CA 6.86 5.35 5.46 8.53 9.82 11.34 10.22 6.64 3.81 </line>
<line>LYS CA 9.34 6.57 4.57 5.96 6.21 8.03 6.96 3.82 </line>
<line>ASN CA 10.87 7.27 5.76 5.41 5.31 5.19 3.80 </line>
<line>ASP CA 14.60 10.91 9.05 7.24 5.31 3.81 </line>
<line>ASP CA 14.23 10.54 8.19 5.11 3.77 </line>
<line>GLY CA 13.31 10.03 6.72 3.81 </line>
<line>THR CA 10.17 7.00 3.80 </line>
<line>TYR CA 6.62 3.79 </line>
<line>THR CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ALA CA 397</line>
<line>THR CA 297</line>
<line>LYS CA 246</line>
<line>ASN CA 177</line>
<line>ASP CA 116</line>
<line>ASP CA 137</line>
<line>GLY CA 168</line>
<line>THR CA 246</line>
<line>TYR CA 321</line>
<line>THR CA 328</line>
<line>LEU CA 404</line>
</n14>
</entryChain>
<parallel>
<x>42.56700134277344</x>
<y>-21.937000274658203</y>
<z>-180.38900756835938</z>
</parallel>
<rotation>
<x>-0.9879999756813049</x>
<y>-0.11999999731779099</y>
<z>-0.09300000220537186</z>
<x>-0.035999998450279236</x>
<y>0.7760000228881836</y>
<z>-0.6290000081062317</z>
<x>0.14800000190734863</x>
<y>-0.6190000176429749</y>
<z>-0.7720000147819519</z>
</rotation>
<rmsd>0.7586849927902222</rmsd>
<dmax>1.4435009956359863</dmax>
</indel>