NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BVMA-2NOTA
confEVID 1BVMA-2NOTA
pdbIDA 1BVM
pdbIDB 2NOT
pdbChainA A
pdbChainB A
identity 0.439999997615814
indelSize 1
alignment <alignment>
<seq1>ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKL-DSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDK-KNC-</seq1>
<seq2>NLVQFSYLIQCANHGRRPTRHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMS-------AYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKAPYNNANWNIDTKKRCQ</seq2>
<ss_1> HHHHHHHHHH HHHHHHHHHHHHHHHHHH -HHHH EEEEE EEEEE HHHHHHHHHHHHHHHHH - -</ss_1>
<ss_2> HHHHHHHHHH HHHH HHHHHHHHHHHHHHHHH HHHH------- EEE EEE HHHHHHHHHHHHHHHHHHH GGG HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BVM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BVMA</entryIDChain>
<sequence>QAKKL-DSCKV</sequence>
<secondary-structure>HHHH -HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 784 CA GLN A 54 102.610 -1.615 -8.203 1.00 0.00 C </line>
<line>ATOM 801 CA ALA A 55 100.600 -4.843 -8.472 1.00 0.00 C </line>
<line>ATOM 811 CA LYS A 56 100.225 -4.415 -12.253 1.00 0.00 C </line>
<line>ATOM 833 CA LYS A 57 103.989 -3.938 -12.710 1.00 0.00 C </line>
<line>ATOM 855 CA LEU A 58 104.616 -7.227 -10.857 1.00 0.00 C </line>
<line>ATOM 874 CA ASP A 59 105.522 -9.995 -13.339 1.00 0.00 C </line>
<line>ATOM 886 CA SER A 60 102.947 -12.505 -12.040 1.00 0.00 C </line>
<line>ATOM 897 CA CYS A 61 100.286 -9.773 -12.317 1.00 0.00 C </line>
<line>ATOM 907 CA LYS A 62 101.590 -8.850 -15.791 1.00 0.00 C </line>
<line>ATOM 929 CA VAL A 63 100.576 -12.324 -17.037 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS CYS SER ASP LEU LYS LYS ALA GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 14.03 10.53 9.43 11.55 10.25 6.52 5.25 5.47 3.81 </line>
<line>ALA CA 11.37 8.40 6.26 8.77 8.63 5.24 5.50 3.82 </line>
<line>LYS CA 9.25 5.84 5.36 8.54 7.77 5.40 3.82 </line>
<line>LYS CA 10.03 6.27 6.92 8.66 6.28 3.83 </line>
<line>LEU CA 8.97 6.01 5.23 5.66 3.83 </line>
<line>ASP CA 6.60 4.77 5.34 3.82 </line>
<line>SER CA 5.53 5.41 3.82 </line>
<line>CYS CA 5.37 3.82 </line>
<line>LYS CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLN CA 469</line>
<line>ALA CA 583</line>
<line>LYS CA 488</line>
<line>LYS CA 384</line>
<line>LEU CA 413</line>
<line>ASP CA 330</line>
<line>SER CA 369</line>
<line>CYS CA 471</line>
<line>LYS CA 367</line>
<line>VAL CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>DAEKKGCSPKM</sequence>
<secondary-structure>HHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 426 CA ASP A 54 2.288 18.071 42.980 1.00 6.55 C </line>
<line>ATOM 434 CA ALA A 55 0.720 17.168 39.669 1.00 2.00 C </line>
<line>ATOM 439 CA GLU A 56 -2.454 15.959 41.385 1.00 3.02 C </line>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
</atom-coordinate>
<distance-map>
<line> MET LYS PRO SER CYS GLY LYS LYS GLU ALA ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 14.88 13.39 9.98 10.03 8.39 8.81 6.33 5.00 5.43 3.77 </line>
<line>ALA CA 11.43 10.44 6.85 6.78 4.92 6.53 5.24 5.44 3.81 </line>
<line>GLU CA 10.66 9.70 7.04 5.45 4.85 5.12 5.43 3.85 </line>
<line>LYS CA 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 8.13 8.76 6.06 3.82 </line>
<line>SER CA 5.25 5.35 3.86 </line>
<line>PRO CA 5.65 3.80 </line>
<line>LYS CA 3.81 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ASP CA 212</line>
<line>ALA CA 265</line>
<line>GLU CA 213</line>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
</n14>
</entryChain>
<parallel>
<x>104.18900299072266</x>
<y>-23.481000900268555</y>
<z>-50.981998443603516</z>
</parallel>
<rotation>
<x>-0.4180000126361847</x>
<y>0.23399999737739563</y>
<z>0.878000020980835</z>
<x>0.8759999871253967</x>
<y>0.36000001430511475</y>
<z>0.32100000977516174</z>
<x>-0.2409999966621399</x>
<y>0.902999997138977</y>
<z>-0.35499998927116394</z>
</rotation>
<rmsd>2.3311378955841064</rmsd>
<dmax>3.282952070236206</dmax>
</indel>