NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BVUE-1HRDA
confEVID 1BVUE-1HRDA
pdbIDA 1BVU
pdbIDB 1HRD
pdbChainA E
pdbChainB A
identity 0.28999999165535
indelSize 3
alignment <alignment>
<seq1>QDPFEIAVKQLE---------------RAAQYMDISEEA-----------LEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGL-------NADEVL--------AWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNI---KAKIVAELANGPTTPEADEILYEKG-ILIIPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNIN--MRDAAYVVAVSRVYQAMKDRGWIKK</seq1>
<seq2>SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSL---GPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVG--GFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFG-------VQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW-</seq2>
<ss_1> HHHHHHHH---------------HHGGG HHH-----------HHHH EEEEEEEEEEE EEEEEEEEEEEEE EE HHHHHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHHHGGG EE HHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH EEEEE HHHHHHHHHHH EEEEEE EEEEE ------- HHHHH--------HHHH EEE HHHHH EE HHHH --- EEE HHHHHHH - EEE HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH --HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHHH HHHHHHHHHHHGGG---HHHH HHHH HHHHH EEEEEEEEEEE EEEEEEEEEEEEE EEEEEE HHHHHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHHHHGGGG EEEEEE HHHHHHHHHHHHHH -- GGG HHHHHHHHHHHHHHHH EEE HHHHHHHHHHHH- EEEEEEEEEEEEEE HHHHHHHHHHHHH HHHHHH ------- EEE EEE HHHHHHHHH EE HHHHHHH EEE HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEHHHHHHHHHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BVU</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BVUE</entryIDChain>
<sequence>EKNIN--MRDAA</sequence>
<secondary-structure>H --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 16063 CA GLU E 389 -13.576 126.229 42.579 1.00 24.10 C </line>
<line>ATOM 16072 CA LYS E 390 -11.659 123.302 43.990 1.00 33.25 C </line>
<line>ATOM 16081 CA ASN E 391 -8.502 125.140 43.070 1.00 62.47 C </line>
<line>ATOM 16089 CA ILE E 392 -6.708 122.395 41.160 1.00 46.69 C </line>
<line>ATOM 16097 CA ASN E 393 -5.061 121.928 37.763 1.00 52.93 C </line>
<line>ATOM 16105 CA MET E 394 -7.069 121.425 34.644 1.00 21.95 C </line>
<line>ATOM 16113 CA ARG E 395 -5.893 117.858 34.348 1.00 19.76 C </line>
<line>ATOM 16124 CA ASP E 396 -7.029 117.167 37.860 1.00 49.40 C </line>
<line>ATOM 16132 CA ALA E 397 -10.266 119.094 37.397 1.00 72.90 C </line>
<line>ATOM 16137 CA ALA E 398 -11.201 117.223 34.213 1.00 58.93 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA ASP ARG MET ASN ILE ASN LYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.52 9.42 12.13 14.03 11.33 10.69 7.99 5.21 3.77 </line>
<line>LYS CA 11.52 7.94 9.83 12.48 10.58 9.18 5.77 3.77 </line>
<line>ASN CA 12.18 8.48 9.64 11.66 9.32 7.09 3.79 </line>
<line>ILE CA 9.76 6.14 6.19 8.23 6.60 3.80 </line>
<line>ASN CA 8.51 5.94 5.15 5.38 3.74 </line>
<line>MET CA 5.91 4.82 5.34 3.77 </line>
<line>ARG CA 5.35 5.47 3.76 </line>
<line>ASP CA 5.54 3.80 </line>
<line>ALA CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 196</line>
<line>LYS CA 221</line>
<line>ASN CA 244</line>
<line>ILE CA 321</line>
<line>ASN CA 419</line>
<line>MET CA 496</line>
<line>ARG CA 521</line>
<line>ASP CA 440</line>
<line>ALA CA 440</line>
<line>ALA CA 514</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>RYGLGYNLVAGA</sequence>
<secondary-structure>H EEHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3230 CA ARG A 419 -37.190 -9.164 73.028 1.00 21.92 C </line>
<line>ATOM 3241 CA TYR A 420 -37.513 -7.722 76.595 1.00 27.58 C </line>
<line>ATOM 3253 CA GLY A 421 -41.230 -7.071 76.314 1.00 31.71 C </line>
<line>ATOM 3257 CA LEU A 422 -40.928 -3.324 75.987 1.00 33.79 C </line>
<line>ATOM 3265 CA GLY A 423 -42.555 -3.158 72.627 1.00 31.71 C </line>
<line>ATOM 3269 CA TYR A 424 -41.371 -0.514 70.108 1.00 38.89 C </line>
<line>ATOM 3281 CA ASN A 425 -39.320 1.461 72.552 1.00 23.07 C </line>
<line>ATOM 3289 CA LEU A 426 -36.425 2.801 70.466 1.00 24.86 C </line>
<line>ATOM 3297 CA VAL A 427 -35.056 4.642 73.517 1.00 21.74 C </line>
<line>ATOM 3304 CA ALA A 428 -34.529 1.525 75.647 1.00 33.48 C </line>
<line>ATOM 3309 CA GLY A 429 -33.732 -0.566 72.550 1.00 24.66 C </line>
<line>ATOM 3313 CA ALA A 430 -30.662 1.520 71.903 1.00 30.39 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLY ALA VAL LEU ASN TYR GLY LEU GLY TYR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 12.57 9.28 11.32 13.98 12.26 10.85 10.04 8.06 7.54 5.61 3.86 </line>
<line>TYR CA 12.42 9.05 9.76 12.98 12.23 10.20 10.44 7.87 5.60 3.78 </line>
<line>GLY CA 14.32 10.62 10.92 13.53 12.44 9.52 9.03 5.54 3.77 </line>
<line>LEU CA 12.06 8.44 8.04 10.20 9.40 6.11 6.53 3.74 </line>
<line>GLY CA 12.80 9.20 9.77 10.86 8.82 5.64 3.84 </line>
<line>TYR CA 11.05 8.02 9.04 8.84 5.96 3.75 </line>
<line>ASN CA 8.68 5.94 5.70 5.41 3.81 </line>
<line>LEU CA 6.08 4.79 5.66 3.82 </line>
<line>VAL CA 5.63 5.46 3.81 </line>
<line>ALA CA 5.38 3.82 </line>
<line>GLY CA 3.77 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 228</line>
<line>TYR CA 245</line>
<line>GLY CA 182</line>
<line>LEU CA 240</line>
<line>GLY CA 240</line>
<line>TYR CA 321</line>
<line>ASN CA 384</line>
<line>LEU CA 446</line>
<line>VAL CA 480</line>
<line>ALA CA 404</line>
<line>GLY CA 415</line>
<line>ALA CA 493</line>
</n14>
</entryChain>
<parallel>
<x>29.990999221801758</x>
<y>124.61399841308594</y>
<z>-34.84600067138672</z>
</parallel>
<rotation>
<x>-0.7730000019073486</x>
<y>-0.5759999752044678</y>
<z>-0.2669999897480011</z>
<x>0.6119999885559082</x>
<y>-0.5669999718666077</y>
<z>-0.5509999990463257</z>
<x>0.16599999368190765</x>
<y>-0.5889999866485596</y>
<z>0.7910000085830688</z>
</rotation>
<rmsd>1.9550750255584717</rmsd>
<dmax>4.176296234130859</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>RKIVG--GFYNG</sequence>
<secondary-structure>HHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1419 CA ARG A 181 4.158 9.271 61.654 1.00 15.32 C </line>
<line>ATOM 1430 CA LYS A 182 7.455 10.814 62.397 1.00 11.92 C </line>
<line>ATOM 1439 CA ILE A 183 8.098 8.937 65.636 1.00 19.42 C </line>
<line>ATOM 1447 CA VAL A 184 6.887 5.545 64.450 1.00 8.20 C </line>
<line>ATOM 1454 CA GLY A 185 8.639 5.763 61.173 1.00 8.51 C </line>
<line>ATOM 1458 CA GLY A 186 5.779 4.395 59.087 1.00 15.25 C </line>
<line>ATOM 1462 CA PHE A 187 2.404 5.381 57.662 1.00 14.18 C </line>
<line>ATOM 1473 CA TYR A 188 -0.265 3.701 59.824 1.00 6.69 C </line>
<line>ATOM 1485 CA ASN A 189 -2.745 6.430 58.934 1.00 7.54 C </line>
<line>ATOM 1493 CA GLY A 190 -5.604 4.468 60.443 1.00 10.69 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN TYR PHE GLY GLY VAL ILE LYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.95 7.94 7.34 5.84 5.74 5.71 5.40 5.61 3.72 </line>
<line>LYS CA 14.65 11.63 10.81 8.80 7.41 5.33 5.68 3.80 </line>
<line>ILE CA 15.32 12.99 11.45 10.42 8.30 5.50 3.79 </line>
<line>VAL CA 13.16 11.13 8.72 8.14 5.60 3.72 </line>
<line>GLY CA 14.32 11.62 9.24 7.17 3.80 </line>
<line>GLY CA 11.46 8.76 6.13 3.79 </line>
<line>PHE CA 8.53 5.41 3.82 </line>
<line>TYR CA 5.43 3.79 </line>
<line>ASN CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ARG CA 286</line>
<line>LYS CA 227</line>
<line>ILE CA 231</line>
<line>VAL CA 230</line>
<line>GLY CA 161</line>
<line>GLY CA 190</line>
<line>PHE CA 259</line>
<line>TYR CA 328</line>
<line>ASN CA 384</line>
<line>GLY CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BVU</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BVUE</entryIDChain>
<sequence>ETISRRKDPSFG</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 14311 CA GLU E 160 -25.897 93.715 8.910 1.00 26.91 C </line>
<line>ATOM 14320 CA THR E 161 -25.582 90.193 7.557 1.00 30.33 C </line>
<line>ATOM 14327 CA ILE E 162 -26.000 88.740 11.034 1.00 18.19 C </line>
<line>ATOM 14335 CA SER E 163 -28.320 91.356 12.380 1.00 12.72 C </line>
<line>ATOM 14341 CA ARG E 164 -30.622 90.926 9.353 1.00 16.90 C </line>
<line>ATOM 14352 CA ARG E 165 -31.312 94.667 9.155 1.00 11.62 C </line>
<line>ATOM 14363 CA LYS E 166 -33.699 94.505 12.024 1.00 19.23 C </line>
<line>ATOM 14372 CA ASP E 167 -32.103 97.691 13.494 1.00 25.54 C </line>
<line>ATOM 14380 CA PRO E 168 -30.296 100.833 12.450 1.00 8.66 C </line>
<line>ATOM 14387 CA SER E 169 -27.377 98.755 11.244 1.00 34.82 C </line>
<line>ATOM 14393 CA PHE E 170 -25.386 101.807 10.126 1.00 25.15 C </line>
<line>ATOM 14404 CA GLY E 171 -25.141 102.921 13.769 1.00 16.10 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PHE SER PRO ASP LYS ARG ARG SER ILE THR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 10.44 8.20 5.75 9.09 8.68 8.44 5.50 5.50 4.85 5.41 3.79 </line>
<line>THR CA 14.17 11.90 9.49 12.62 11.58 10.22 7.44 5.40 5.67 3.79 </line>
<line>ILE CA 14.47 13.11 10.11 12.91 11.11 9.67 8.18 5.38 3.75 </line>
<line>SER CA 12.07 11.09 7.54 9.68 7.46 6.24 5.51 3.83 </line>
<line>ARG CA 13.91 12.10 8.68 10.38 8.07 5.42 3.81 </line>
<line>ARG CA 11.29 9.33 6.05 7.06 5.35 3.74 </line>
<line>LYS CA 12.13 11.23 7.66 7.20 3.85 </line>
<line>ASP CA 8.71 8.57 5.34 3.77 </line>
<line>PRO CA 5.72 5.52 3.78 </line>
<line>SER CA 5.36 3.81 </line>
<line>PHE CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLU CA 310</line>
<line>THR CA 252</line>
<line>ILE CA 250</line>
<line>SER CA 267</line>
<line>ARG CA 190</line>
<line>ARG CA 208</line>
<line>LYS CA 181</line>
<line>ASP CA 258</line>
<line>PRO CA 317</line>
<line>SER CA 379</line>
<line>PHE CA 419</line>
<line>GLY CA 462</line>
</n14>
</entryChain>
<parallel>
<x>33.66899871826172</x>
<y>-87.30000305175781</y>
<z>50.68299865722656</z>
</parallel>
<rotation>
<x>-0.6050000190734863</x>
<y>0.5139999985694885</y>
<z>0.6079999804496765</z>
<x>-0.7739999890327454</x>
<y>-0.1979999989271164</y>
<z>-0.6019999980926514</z>
<x>-0.1889999955892563</x>
<y>-0.8349999785423279</y>
<z>0.5180000066757202</z>
</rotation>
<rmsd>1.978371024131775</rmsd>
<dmax>3.0582520961761475</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>KKLAE-LGAKA</sequence>
<secondary-structure>HHHHH- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1904 CA LYS A 247 -30.802 17.785 51.758 1.00 18.47 C </line>
<line>ATOM 1913 CA LYS A 248 -31.451 14.043 52.214 1.00 28.73 C </line>
<line>ATOM 1922 CA LEU A 249 -35.066 14.680 53.140 1.00 27.73 C </line>
<line>ATOM 1930 CA ALA A 250 -35.568 16.589 49.942 1.00 26.69 C </line>
<line>ATOM 1935 CA GLU A 251 -33.911 13.798 47.992 1.00 27.19 C </line>
<line>ATOM 1944 CA LEU A 252 -36.205 11.135 49.445 1.00 30.86 C </line>
<line>ATOM 1952 CA GLY A 253 -39.324 13.127 48.740 1.00 27.42 C </line>
<line>ATOM 1956 CA ALA A 254 -40.040 14.743 52.096 1.00 19.42 C </line>
<line>ATOM 1961 CA LYS A 255 -39.651 18.323 53.161 1.00 13.04 C </line>
<line>ATOM 1970 CA ALA A 256 -38.255 20.461 55.884 1.00 23.40 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS ALA GLY LEU GLU ALA LEU LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 8.93 8.98 9.73 10.17 8.87 6.30 5.24 5.45 3.83 </line>
<line>LYS CA 10.05 9.30 8.62 8.65 6.22 4.89 5.35 3.79 </line>
<line>LEU CA 7.15 5.86 5.08 6.32 5.25 5.35 3.76 </line>
<line>ALA CA 7.58 5.48 5.30 5.25 5.51 3.79 </line>
<line>GLU CA 11.20 8.95 7.44 5.51 3.80 </line>
<line>LEU CA 11.52 8.79 5.90 3.77 </line>
<line>GLY CA 10.29 6.83 3.79 </line>
<line>ALA CA 7.09 3.76 </line>
<line>LYS CA 3.73 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 408</line>
<line>LYS CA 420</line>
<line>LEU CA 438</line>
<line>ALA CA 361</line>
<line>GLU CA 294</line>
<line>LEU CA 282</line>
<line>GLY CA 260</line>
<line>ALA CA 350</line>
<line>LYS CA 394</line>
<line>ALA CA 496</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BVU</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BVUE</entryIDChain>
<sequence>KIMSEEYGMKV</sequence>
<secondary-structure>HHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 14807 CA LYS E 228 -4.787 126.431 9.040 1.00 34.55 C </line>
<line>ATOM 14816 CA ILE E 229 -7.666 127.100 11.478 1.00 25.17 C </line>
<line>ATOM 14824 CA MET E 230 -6.129 129.294 14.204 1.00 31.14 C </line>
<line>ATOM 14832 CA SER E 231 -4.580 131.513 11.578 1.00 69.93 C </line>
<line>ATOM 14838 CA GLU E 232 -7.346 131.570 9.044 1.00 28.26 C </line>
<line>ATOM 14847 CA GLU E 233 -10.383 131.646 11.335 1.00 36.32 C </line>
<line>ATOM 14856 CA TYR E 234 -8.817 133.201 14.364 1.00100.00 C </line>
<line>ATOM 14868 CA GLY E 235 -6.271 135.488 12.817 1.00 25.22 C </line>
<line>ATOM 14872 CA MET E 236 -3.283 134.097 14.639 1.00 44.22 C </line>
<line>ATOM 14880 CA LYS E 237 0.363 134.145 13.476 1.00 30.08 C </line>
<line>ATOM 14889 CA VAL E 238 1.794 130.616 13.138 1.00 26.54 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS MET GLY TYR GLU GLU SER MET ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 8.81 10.28 9.61 9.92 9.51 7.99 5.74 5.68 6.06 3.83 </line>
<line>ILE CA 10.23 10.87 8.84 8.61 6.85 5.30 5.10 5.39 3.82 </line>
<line>MET CA 8.10 8.14 5.60 6.35 4.75 5.64 5.77 3.77 </line>
<line>SER CA 6.62 5.91 4.21 4.49 5.34 5.81 3.75 </line>
<line>GLU CA 10.06 9.26 7.36 5.54 5.76 3.80 </line>
<line>GLU CA 12.35 11.24 8.21 5.82 3.75 </line>
<line>TYR CA 10.99 9.27 5.61 3.76 </line>
<line>GLY CA 9.43 6.80 3.77 </line>
<line>MET CA 6.34 3.83 </line>
<line>LYS CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LYS CA 374</line>
<line>ILE CA 398</line>
<line>MET CA 439</line>
<line>SER CA 373</line>
<line>GLU CA 284</line>
<line>GLU CA 275</line>
<line>TYR CA 307</line>
<line>GLY CA 257</line>
<line>MET CA 345</line>
<line>LYS CA 340</line>
<line>VAL CA 448</line>
</n14>
</entryChain>
<parallel>
<x>-29.18600082397461</x>
<y>-116.5989990234375</y>
<z>38.52000045776367</z>
</parallel>
<rotation>
<x>-0.41999998688697815</x>
<y>0.8669999837875366</y>
<z>0.2680000066757202</z>
<x>-0.777999997138977</x>
<y>-0.19200000166893005</y>
<z>-0.5979999899864197</z>
<x>-0.46700000762939453</x>
<y>-0.46000000834465027</y>
<z>0.7549999952316284</z>
</rotation>
<rmsd>0.7804639935493469</rmsd>
<dmax>1.1822750568389893</dmax>
</indel>