NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BVXA-2G4NF
confEVID 1BVXA-2G4NF
pdbIDA 1BVX
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.354299992322922
indelSize 3
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BVX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BVXA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 10.670 16.046 17.879 1.00 12.37 C </line>
<line>ATOM 340 CA ASN A 44 12.813 18.983 18.993 1.00 15.50 C </line>
<line>ATOM 348 CA ARG A 45 15.247 19.198 21.889 1.00 18.45 C </line>
<line>ATOM 359 CA ASN A 46 15.178 22.269 24.123 1.00 21.93 C </line>
<line>ATOM 367 CA THR A 47 18.211 23.851 25.851 1.00 26.91 C </line>
<line>ATOM 374 CA ASP A 48 16.853 22.797 29.252 1.00 24.38 C </line>
<line>ATOM 382 CA GLY A 49 17.087 19.132 28.267 1.00 20.25 C </line>
<line>ATOM 386 CA SER A 50 13.334 18.668 27.711 1.00 15.73 C </line>
<line>ATOM 392 CA THR A 51 11.945 17.633 24.304 1.00 11.63 C </line>
<line>ATOM 399 CA ASP A 52 8.852 18.584 22.271 1.00 11.34 C </line>
<line>ATOM 407 CA TYR A 53 6.865 15.798 20.618 1.00 11.84 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.69 5.39 6.74 10.52 12.59 14.60 13.47 9.90 6.85 3.80 </line>
<line>ASN CA 6.94 5.16 5.55 8.74 10.21 11.67 9.99 6.54 3.79 </line>
<line>ARG CA 9.13 6.44 4.38 6.15 6.64 8.35 6.79 3.80 </line>
<line>ASN CA 11.10 7.55 5.65 5.41 5.54 5.42 3.83 </line>
<line>THR CA 14.86 11.32 8.96 7.36 5.42 3.81 </line>
<line>ASP CA 14.94 11.42 8.67 5.64 3.80 </line>
<line>GLY CA 13.20 10.20 6.66 3.82 </line>
<line>SER CA 10.02 7.05 3.82 </line>
<line>THR CA 6.54 3.82 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 299</line>
<line>ASN CA 276</line>
<line>ARG CA 216</line>
<line>ASN CA 206</line>
<line>THR CA 141</line>
<line>ASP CA 160</line>
<line>GLY CA 193</line>
<line>SER CA 259</line>
<line>THR CA 318</line>
<line>ASP CA 405</line>
<line>TYR CA 429</line>
</n14>
</entryChain>
<parallel>
<x>44.56800079345703</x>
<y>-3.9769999980926514</y>
<z>94.3759994506836</z>
</parallel>
<rotation>
<x>0.871999979019165</x>
<y>-0.39399999380111694</y>
<z>-0.29100000858306885</z>
<x>0.46000000834465027</x>
<y>0.45500001311302185</y>
<z>0.7630000114440918</z>
<x>-0.16899999976158142</x>
<y>-0.7990000247955322</y>
<z>0.578000009059906</z>
</rotation>
<rmsd>1.0910429954528809</rmsd>
<dmax>1.941578984260559</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BVX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BVXA</entryIDChain>
<sequence>KIVSDGNGMNA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 740 CA LYS A 97 -5.532 19.829 29.084 1.00 17.01 C </line>
<line>ATOM 749 CA ILE A 98 -2.724 22.290 28.160 1.00 16.11 C </line>
<line>ATOM 757 CA VAL A 99 -5.061 24.880 26.621 1.00 18.75 C </line>
<line>ATOM 764 CA SER A 100 -7.291 24.642 29.721 1.00 25.72 C </line>
<line>ATOM 770 CA ASP A 101 -4.514 25.386 32.246 1.00 35.57 C </line>
<line>ATOM 778 CA GLY A 102 -4.893 29.176 32.221 1.00 34.15 C </line>
<line>ATOM 782 CA ASN A 103 -2.682 30.552 29.419 1.00 25.42 C </line>
<line>ATOM 790 CA GLY A 104 -4.802 29.318 26.553 1.00 15.29 C </line>
<line>ATOM 794 CA MET A 105 -3.037 28.718 23.244 1.00 12.06 C </line>
<line>ATOM 802 CA ASN A 106 -0.264 31.092 24.310 1.00 13.87 C </line>
<line>ATOM 810 CA ALA A 107 1.331 27.873 25.622 1.00 14.77 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN MET GLY ASN GLY ASP SER VAL ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.13 13.32 10.92 9.85 11.10 9.88 6.47 5.16 5.64 3.85 </line>
<line>ILE CA 7.35 9.92 8.10 7.50 8.36 8.28 5.43 5.37 3.81 </line>
<line>VAL CA 7.13 8.18 5.50 4.45 6.76 7.06 5.67 3.83 </line>
<line>SER CA 10.08 10.97 8.76 6.17 7.50 5.71 3.83 </line>
<line>ASP CA 9.18 10.66 9.71 6.92 6.17 3.81 </line>
<line>GLY CA 9.16 9.36 9.18 5.67 3.83 </line>
<line>ASN CA 6.14 5.68 6.45 3.77 </line>
<line>GLY CA 6.37 5.36 3.80 </line>
<line>MET CA 5.04 3.80 </line>
<line>ASN CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 317</line>
<line>ILE CA 379</line>
<line>VAL CA 352</line>
<line>SER CA 246</line>
<line>ASP CA 219</line>
<line>GLY CA 179</line>
<line>ASN CA 208</line>
<line>GLY CA 283</line>
<line>MET CA 372</line>
<line>ASN CA 293</line>
<line>ALA CA 345</line>
</n14>
</entryChain>
<parallel>
<x>44.887001037597656</x>
<y>-9.065999984741211</y>
<z>98.8949966430664</z>
</parallel>
<rotation>
<x>0.9610000252723694</x>
<y>-0.13099999725818634</y>
<z>-0.24500000476837158</z>
<x>0.2750000059604645</x>
<y>0.31299999356269836</y>
<z>0.9089999794960022</z>
<x>-0.041999999433755875</x>
<y>-0.9409999847412109</y>
<z>0.335999995470047</z>
</rotation>
<rmsd>0.9468899965286255</rmsd>
<dmax>2.0476980209350586</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BVX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BVXA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 4.062 34.357 17.197 1.00 15.30 C </line>
<line>ATOM 874 CA ARG A 114 2.586 33.230 13.894 1.00 15.12 C </line>
<line>ATOM 885 CA CYS A 115 -1.147 32.586 14.245 1.00 12.82 C </line>
<line>ATOM 891 CA LYS A 116 -2.428 34.844 17.000 1.00 14.24 C </line>
<line>ATOM 900 CA GLY A 117 -4.145 37.888 15.523 1.00 21.17 C </line>
<line>ATOM 904 CA THR A 118 -4.018 36.624 11.920 1.00 19.69 C </line>
<line>ATOM 911 CA ASP A 119 -6.864 35.379 9.745 1.00 24.12 C </line>
<line>ATOM 919 CA VAL A 120 -6.821 31.783 10.989 1.00 22.60 C </line>
<line>ATOM 926 CA GLN A 121 -9.967 30.918 8.991 1.00 23.52 C </line>
<line>ATOM 935 CA ALA A 122 -7.695 30.759 5.950 1.00 18.42 C </line>
<line>ATOM 940 CA TRP A 123 -6.227 27.509 7.304 1.00 19.22 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.83 16.66 16.61 12.79 13.26 9.91 9.09 6.51 6.24 3.79 </line>
<line>ARG CA 12.40 13.23 13.67 9.95 10.54 7.68 8.35 6.11 3.80 </line>
<line>CYS CA 9.99 10.72 10.40 6.59 7.79 5.47 6.22 3.79 </line>
<line>LYS CA 12.74 12.90 11.68 8.05 8.52 5.61 3.79 </line>
<line>GLY CA 13.40 12.45 11.19 8.06 6.86 3.82 </line>
<line>THR CA 10.45 9.14 8.75 5.67 3.79 </line>
<line>ASP CA 8.26 6.04 5.49 3.81 </line>
<line>VAL CA 5.67 5.22 3.83 </line>
<line>GLN CA 5.33 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 205</line>
<line>ARG CA 245</line>
<line>CYS CA 300</line>
<line>LYS CA 265</line>
<line>GLY CA 194</line>
<line>THR CA 209</line>
<line>ASP CA 195</line>
<line>VAL CA 295</line>
<line>GLN CA 260</line>
<line>ALA CA 221</line>
<line>TRP CA 315</line>
</n14>
</entryChain>
<parallel>
<x>47.999000549316406</x>
<y>1.6660000085830688</y>
<z>114.50399780273438</z>
</parallel>
<rotation>
<x>0.9070000052452087</x>
<y>-0.42100000381469727</y>
<z>-0.004000000189989805</z>
<x>0.1889999955892563</x>
<y>0.39899998903274536</y>
<z>0.8970000147819519</z>
<x>-0.37599998712539673</x>
<y>-0.8149999976158142</y>
<z>0.4410000145435333</z>
</rotation>
<rmsd>1.1497390270233154</rmsd>
<dmax>2.048711061477661</dmax>
</indel>