NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BX0A-2BMWA
confEVID 1BX0A-2BMWA
pdbIDA 1BX0
pdbIDB 2BMW
pdbChainA A
pdbChainB A
identity 0.488099992275238
indelSize 3
alignment <alignment>
<seq1>HSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTND-AGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFF----EKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVLVY</seq1>
<seq2>-------DVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY</seq2>
<ss_1> EE EEEEEEEEEEE EEEEEEEEE - EEEEEE EEEE EEEEE EEEEE - EEEEEHHHHHHH EEEEEEEEE EEEEEEEGGGGHHHHHHHHHH ---- EEEEEEEE GGG HHHHHHHHH HHHHEEEEEE HHHHHGGGHHHHHHHH EEEEE GGHHHHHHHHHHHHHH HHHHHHHHHH EEE </ss_1>
<ss_2>------- EE EEEEEEEEEEE EEEEEEEEE EEEEEE EEEE EEEEE EEE EEEHHHHHHH EEEEEEEEE EEEEEEEGGGHHHHHHHHHHHH HHHHHH EEEEEEE GGG HHHHHHHHHH HHHHEEEEEE HHHHHHH HHHHHHHH EEEEE HHHHHHHHHHHH HHHHHHHHHH EEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BX0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BX0A</entryIDChain>
<sequence>FSHEG-EIPYR</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 341 CA PHE A 62 38.983 -1.969 15.131 1.00 10.25 C </line>
<line>ATOM 352 CA SER A 63 42.404 -0.742 16.226 1.00 13.55 C </line>
<line>ATOM 358 CA HIS A 64 43.183 2.884 15.470 1.00 12.70 C </line>
<line>ATOM 368 CA GLU A 65 46.114 3.444 17.804 1.00 17.19 C </line>
<line>ATOM 377 CA GLY A 66 44.761 6.739 19.110 1.00 13.16 C </line>
<line>ATOM 381 CA GLU A 67 44.954 8.242 15.600 1.00 17.88 C </line>
<line>ATOM 390 CA ILE A 68 41.174 8.904 15.409 1.00 16.95 C </line>
<line>ATOM 398 CA PRO A 69 40.231 11.282 18.263 1.00 15.70 C </line>
<line>ATOM 405 CA TYR A 70 36.431 10.865 18.252 1.00 11.93 C </line>
<line>ATOM 417 CA ARG A 71 33.766 11.890 20.746 1.00 10.69 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TYR PRO ILE GLU GLY GLU HIS SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 15.84 13.45 13.67 11.10 11.84 11.18 9.34 6.43 3.80 </line>
<line>SER CA 15.96 13.21 12.39 9.76 9.36 8.36 5.81 3.79 </line>
<line>HIS CA 14.06 10.82 9.33 6.35 5.64 5.53 3.79 </line>
<line>GLU CA 15.25 12.21 9.81 7.74 5.41 3.79 </line>
<line>GLY CA 12.25 9.34 6.47 5.59 3.82 </line>
<line>GLU CA 12.84 9.30 6.22 3.84 </line>
<line>ILE CA 9.61 5.87 3.83 </line>
<line>PRO CA 6.95 3.82 </line>
<line>TYR CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>PHE CA 444</line>
<line>SER CA 354</line>
<line>HIS CA 361</line>
<line>GLU CA 262</line>
<line>GLY CA 264</line>
<line>GLU CA 283</line>
<line>ILE CA 381</line>
<line>PRO CA 346</line>
<line>TYR CA 434</line>
<line>ARG CA 440</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BMW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BMWA</entryIDChain>
<sequence>FDLTGGNLKYI</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 278 CA PHE A 45 -26.583 57.680 -13.131 1.00 9.51 C </line>
<line>ATOM 289 CA ASP A 46 -28.351 61.018 -13.605 1.00 9.96 C </line>
<line>ATOM 297 CA LEU A 47 -30.754 61.881 -10.766 1.00 12.75 C </line>
<line>ATOM 305 CA THR A 48 -32.153 65.083 -12.253 1.00 17.38 C </line>
<line>ATOM 312 CA GLY A 49 -35.929 65.005 -12.593 1.00 19.62 C </line>
<line>ATOM 316 CA GLY A 50 -36.361 63.212 -9.286 1.00 16.13 C </line>
<line>ATOM 320 CA ASN A 51 -35.721 63.855 -5.597 1.00 13.86 C </line>
<line>ATOM 328 CA LEU A 52 -33.476 60.934 -4.725 1.00 11.68 C </line>
<line>ATOM 336 CA LYS A 53 -31.004 61.960 -2.031 1.00 11.03 C </line>
<line>ATOM 345 CA TYR A 54 -28.680 59.724 -0.027 1.00 9.60 C </line>
<line>ATOM 357 CA ILE A 55 -25.666 59.677 2.263 1.00 10.12 C </line>
</atom-coordinate>
<distance-map>
<line> ILE TYR LYS LEU ASN GLY GLY THR LEU ASP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 15.55 13.43 12.69 11.35 13.36 11.87 11.89 9.31 6.37 3.81 </line>
<line>ASP CA 16.15 13.64 11.91 10.25 11.25 9.36 8.62 5.73 3.82 </line>
<line>LEU CA 14.16 11.15 8.74 6.69 7.44 5.95 6.31 3.80 </line>
<line>THR CA 16.79 13.79 10.75 8.70 7.65 5.48 3.79 </line>
<line>GLY CA 18.83 15.44 12.05 9.19 7.09 3.79 </line>
<line>GLY CA 16.13 12.53 9.10 5.86 3.80 </line>
<line>ASN CA 13.43 9.88 6.21 3.79 </line>
<line>LEU CA 10.56 6.82 3.80 </line>
<line>LYS CA 7.22 3.80 </line>
<line>TYR CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>PHE CA 453</line>
<line>ASP CA 354</line>
<line>LEU CA 361</line>
<line>THR CA 256</line>
<line>GLY CA 191</line>
<line>GLY CA 243</line>
<line>ASN CA 256</line>
<line>LEU CA 366</line>
<line>LYS CA 370</line>
<line>TYR CA 424</line>
<line>ILE CA 447</line>
</n14>
</entryChain>
<parallel>
<x>74.47200012207031</x>
<y>-57.32899856567383</y>
<z>25.964000701904297</z>
</parallel>
<rotation>
<x>-0.7570000290870667</x>
<y>-0.4909999966621399</y>
<z>0.4300000071525574</z>
<x>0.40299999713897705</x>
<y>0.16599999368190765</y>
<z>0.8999999761581421</z>
<x>-0.5139999985694885</x>
<y>0.8550000190734863</y>
<z>0.07199999690055847</z>
</rotation>
<rmsd>2.2156190872192383</rmsd>
<dmax>4.903931140899658</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BX0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BX0A</entryIDChain>
<sequence>IYTND-AGETI</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 774 CA ILE A 119 20.458 -8.514 2.102 1.00 30.49 C </line>
<line>ATOM 782 CA TYR A 120 17.603 -7.779 -0.293 1.00 33.37 C </line>
<line>ATOM 794 CA THR A 121 16.250 -8.954 -3.651 1.00 38.74 C </line>
<line>ATOM 801 CA ASN A 122 16.240 -6.926 -6.835 1.00 36.00 C </line>
<line>ATOM 809 CA ASP A 123 13.549 -6.658 -9.506 1.00 45.89 C </line>
<line>ATOM 817 CA ALA A 124 14.526 -9.994 -11.145 1.00 28.64 C </line>
<line>ATOM 822 CA GLY A 125 14.116 -11.793 -7.822 1.00 23.21 C </line>
<line>ATOM 826 CA GLU A 126 17.900 -12.145 -7.448 1.00 26.31 C </line>
<line>ATOM 835 CA THR A 127 19.513 -11.787 -4.004 1.00 29.01 C </line>
<line>ATOM 842 CA ILE A 128 21.683 -8.742 -3.604 1.00 31.70 C </line>
</atom-coordinate>
<distance-map>
<line> ILE THR GLU GLY ALA ASP ASN THR TYR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.84 6.99 10.53 12.23 14.59 13.64 10.01 7.14 3.80 </line>
<line>TYR CA 5.34 5.79 8.39 9.22 11.50 10.13 6.74 3.81 </line>
<line>THR CA 5.44 4.34 5.23 5.48 7.76 6.84 3.78 </line>
<line>ASN CA 6.59 6.51 5.51 5.40 5.56 3.80 </line>
<line>ASP CA 10.26 9.60 7.30 5.43 3.84 </line>
<line>ALA CA 10.47 8.89 5.45 3.80 </line>
<line>GLY CA 9.18 6.61 3.82 </line>
<line>GLU CA 6.38 3.82 </line>
<line>THR CA 3.76 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 217</line>
<line>TYR CA 164</line>
<line>THR CA 113</line>
<line>ASN CA 97</line>
<line>ASP CA 74</line>
<line>ALA CA 69</line>
<line>GLY CA 83</line>
<line>GLU CA 94</line>
<line>THR CA 120</line>
<line>ILE CA 152</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BMW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BMWA</entryIDChain>
<sequence>EYKHPESGETV</sequence>
<secondary-structure>EE E</secondary-structure>
<atom-coordinate>
<line>ATOM 723 CA GLU A 103 -19.975 34.676 -13.306 1.00 25.36 C </line>
<line>ATOM 732 CA TYR A 104 -19.251 31.156 -12.081 1.00 33.68 C </line>
<line>ATOM 744 CA LYS A 105 -18.663 27.412 -12.469 1.00 43.97 C </line>
<line>ATOM 753 CA HIS A 106 -20.338 24.838 -14.710 1.00 49.73 C </line>
<line>ATOM 763 CA PRO A 107 -22.203 22.730 -12.095 1.00 51.84 C </line>
<line>ATOM 770 CA GLU A 108 -25.098 25.206 -12.082 1.00 53.16 C </line>
<line>ATOM 779 CA SER A 109 -27.428 24.341 -14.966 1.00 51.92 C </line>
<line>ATOM 785 CA GLY A 110 -25.566 24.558 -18.263 1.00 48.95 C </line>
<line>ATOM 789 CA GLU A 111 -21.965 25.684 -18.694 1.00 43.67 C </line>
<line>ATOM 798 CA THR A 112 -21.238 29.337 -17.902 1.00 34.39 C </line>
<line>ATOM 805 CA VAL A 113 -23.585 31.372 -15.727 1.00 23.55 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR GLU GLY SER GLU PRO HIS LYS TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 5.46 7.16 10.67 12.58 12.85 10.84 12.21 9.94 7.43 3.80 </line>
<line>TYR CA 5.67 6.41 9.00 11.03 11.03 8.34 8.93 6.93 3.81 </line>
<line>LYS CA 7.11 6.31 7.26 9.45 9.62 6.81 5.88 3.80 </line>
<line>HIS CA 7.37 5.59 4.39 6.33 7.11 5.45 3.84 </line>
<line>PRO CA 9.48 8.85 7.23 7.26 6.18 3.81 </line>
<line>GLU CA 7.32 8.11 7.33 6.23 3.81 </line>
<line>SER CA 8.05 8.48 6.75 3.79 </line>
<line>GLY CA 7.54 6.46 3.80 </line>
<line>GLU CA 6.62 3.81 </line>
<line>THR CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLU CA 247</line>
<line>TYR CA 177</line>
<line>LYS CA 130</line>
<line>HIS CA 110</line>
<line>PRO CA 95</line>
<line>GLU CA 118</line>
<line>SER CA 117</line>
<line>GLY CA 106</line>
<line>GLU CA 110</line>
<line>THR CA 142</line>
<line>VAL CA 186</line>
</n14>
</entryChain>
<parallel>
<x>38.25400161743164</x>
<y>-36.02000045776367</y>
<z>8.998000144958496</z>
</parallel>
<rotation>
<x>0.781000018119812</x>
<y>0.6150000095367432</y>
<z>0.11100000143051147</z>
<x>0.16899999976158142</x>
<y>-0.3779999911785126</y>
<z>0.9100000262260437</z>
<x>-0.6019999980926514</x>
<y>0.6919999718666077</y>
<z>0.39899998903274536</z>
</rotation>
<rmsd>2.4001519680023193</rmsd>
<dmax>4.054422855377197</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1BX0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BX0A</entryIDChain>
<sequence>WKMFF----EKHDD</sequence>
<secondary-structure>HHH ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 1236 CA TRP A 182 29.451 3.730 28.513 1.00 3.82 C </line>
<line>ATOM 1250 CA LYS A 183 30.730 7.233 29.255 1.00 8.82 C </line>
<line>ATOM 1259 CA MET A 184 28.003 7.924 31.793 1.00 10.56 C </line>
<line>ATOM 1267 CA PHE A 185 27.912 4.704 33.752 1.00 9.75 C </line>
<line>ATOM 1278 CA PHE A 186 30.951 2.505 32.939 1.00 8.76 C </line>
<line>ATOM 1289 CA GLU A 187 33.754 5.115 33.266 1.00 12.75 C </line>
<line>ATOM 1298 CA LYS A 188 35.356 7.431 35.814 1.00 20.42 C </line>
<line>ATOM 1307 CA HIS A 189 36.273 10.846 34.410 1.00 15.21 C </line>
<line>ATOM 1317 CA ASP A 190 38.152 13.688 36.004 1.00 26.42 C </line>
<line>ATOM 1325 CA ASP A 191 35.807 16.389 34.675 1.00 28.56 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ASP HIS LYS GLU PHE PHE MET LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 15.45 15.20 11.49 10.09 6.56 4.83 5.55 5.52 3.80 </line>
<line>LYS CA 11.79 11.93 8.39 8.03 5.45 6.00 5.88 3.79 </line>
<line>MET CA 11.87 12.41 9.15 8.40 6.57 6.27 3.77 </line>
<line>PHE CA 14.13 13.81 10.40 8.19 5.88 3.84 </line>
<line>PHE CA 14.81 13.65 10.00 7.21 3.84 </line>
<line>GLU CA 11.55 10.02 6.36 3.80 </line>
<line>LYS CA 9.04 6.86 3.80 </line>
<line>HIS CA 5.57 3.76 </line>
<line>ASP CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>TRP CA 462</line>
<line>LYS CA 461</line>
<line>MET CA 450</line>
<line>PHE CA 401</line>
<line>PHE CA 342</line>
<line>GLU CA 293</line>
<line>LYS CA 218</line>
<line>HIS CA 208</line>
<line>ASP CA 121</line>
<line>ASP CA 167</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BMW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BMWA</entryIDChain>
<sequence>WRMFKDAERAANPE</sequence>
<secondary-structure>HHHH HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1204 CA TRP A 167 -13.937 60.756 -0.742 1.00 8.77 C </line>
<line>ATOM 1218 CA ARG A 168 -15.988 62.761 1.784 1.00 10.18 C </line>
<line>ATOM 1229 CA MET A 169 -12.991 62.854 4.119 1.00 10.75 C </line>
<line>ATOM 1237 CA PHE A 170 -10.244 63.645 1.635 1.00 11.32 C </line>
<line>ATOM 1248 CA LYS A 171 -11.351 64.959 -1.766 1.00 11.17 C </line>
<line>ATOM 1257 CA ASP A 172 -10.566 68.668 -2.155 1.00 12.12 C </line>
<line>ATOM 1265 CA ALA A 173 -14.006 69.404 -3.619 1.00 10.36 C </line>
<line>ATOM 1270 CA GLU A 174 -15.735 67.496 -0.828 1.00 9.65 C </line>
<line>ATOM 1279 CA ARG A 175 -13.906 69.408 1.891 1.00 12.03 C </line>
<line>ATOM 1290 CA ALA A 176 -14.903 72.647 0.166 1.00 13.34 C </line>
<line>ATOM 1295 CA ALA A 177 -18.549 71.549 0.034 1.00 13.65 C </line>
<line>ATOM 1300 CA ASN A 178 -18.733 70.181 3.595 1.00 14.02 C </line>
<line>ATOM 1308 CA PRO A 179 -17.751 72.999 5.966 1.00 17.52 C </line>
<line>ATOM 1315 CA GLU A 180 -19.178 70.939 8.839 1.00 18.87 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO ASN ALA ALA ARG GLU ALA ASP LYS PHE MET ARG TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 14.93 14.47 11.43 11.76 11.96 9.04 6.98 9.11 8.72 5.04 5.26 5.38 3.82 </line>
<line>ARG CA 11.26 11.20 8.12 9.32 10.08 6.97 5.41 8.79 8.93 6.24 5.81 3.80 </line>
<line>MET CA 11.22 11.36 9.32 11.10 10.73 6.98 7.32 10.19 8.89 6.46 3.79 </line>
<line>PHE CA 13.60 12.75 10.89 11.58 10.24 6.83 7.14 8.66 6.30 3.81 </line>
<line>LYS CA 14.47 12.86 10.51 9.92 8.69 6.30 5.15 5.50 3.81 </line>
<line>ASP CA 14.15 11.68 10.10 8.76 6.33 5.30 5.46 3.81 </line>
<line>ALA CA 13.58 10.90 8.66 6.21 5.06 5.51 3.80 </line>
<line>GLU CA 10.82 8.97 5.98 5.01 5.31 3.79 </line>
<line>ARG CA 8.86 6.65 5.18 5.44 3.80 </line>
<line>ALA CA 9.82 6.47 5.70 3.81 </line>
<line>ALA CA 8.85 6.16 3.82 </line>
<line>ASN CA 5.32 3.81 </line>
<line>PRO CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>TRP CA 524</line>
<line>ARG CA 504</line>
<line>MET CA 495</line>
<line>PHE CA 442</line>
<line>LYS CA 380</line>
<line>ASP CA 277</line>
<line>ALA CA 267</line>
<line>GLU CA 329</line>
<line>ARG CA 291</line>
<line>ALA CA 207</line>
<line>ALA CA 220</line>
<line>ASN CA 265</line>
<line>PRO CA 187</line>
<line>GLU CA 204</line>
</n14>
</entryChain>
<parallel>
<x>46.14099884033203</x>
<y>-59.983001708984375</y>
<z>31.364999771118164</z>
</parallel>
<rotation>
<x>-0.6899999976158142</x>
<y>-0.5199999809265137</y>
<z>0.5040000081062317</z>
<x>0.5690000057220459</x>
<y>0.04100000113248825</y>
<z>0.8209999799728394</z>
<x>-0.44699999690055847</x>
<y>0.8529999852180481</y>
<z>0.2669999897480011</z>
</rotation>
<rmsd>2.1198570728302</rmsd>
<dmax>4.680525779724121</dmax>
</indel>