NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BYUA-3RANC
confEVID 1BYUA-3RANC
pdbIDA 1BYU
pdbIDB 3RAN
pdbChainA A
pdbChainB C
identity 0.926500022411346
indelSize 2
alignment <alignment>
<seq1>--EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTT</seq1>
<seq2>QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQT-</seq2>
<ss_1>-- EEEEEE HHHHGGG HHHHH EEE EEEEEEEEEEE EEEEEEEEE HHHH EEEEEEE HHHHH HHHHHHHHHHHH EEEEE GGGGHHHH --- EEE HHHHHHHHHH HHHHHHHHHHHH </ss_1>
<ss_2> EEEEEEEE HHHHGGG HHHHH EEE EEEEEEEEEEE EEEEEEEEE HHHH EEEEEEE HHHHH HHHHHHHHHHHH EEEEEE ---HHHHHH EEE HHHHHHHHHHH HHHHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BYU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BYUA</entryIDChain>
<sequence>FHRKK---NLQYY</sequence>
<secondary-structure>HHH --- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1055 CA PHE A 138 17.541 20.638 31.048 1.00 24.62 C </line>
<line>ATOM 1066 CA HIS A 139 13.838 20.835 29.983 1.00 22.83 C </line>
<line>ATOM 1076 CA ARG A 140 14.248 18.064 27.336 1.00 29.19 C </line>
<line>ATOM 1087 CA LYS A 141 15.572 15.761 30.116 1.00 30.30 C </line>
<line>ATOM 1096 CA LYS A 142 12.271 16.499 31.991 1.00 28.37 C </line>
<line>ATOM 1105 CA ASN A 143 10.265 15.288 28.924 1.00 31.75 C </line>
<line>ATOM 1113 CA LEU A 144 9.159 18.609 27.458 1.00 22.74 C </line>
<line>ATOM 1121 CA GLN A 145 9.312 18.909 23.646 1.00 20.92 C </line>
<line>ATOM 1130 CA TYR A 146 10.786 22.316 22.479 1.00 17.78 C </line>
<line>ATOM 1142 CA TYR A 147 10.374 24.725 19.466 1.00 14.34 C </line>
</atom-coordinate>
<distance-map>
<line> TYR TYR GLN LEU ASN LYS LYS ARG HIS PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 14.22 11.04 11.20 9.34 9.28 6.77 5.34 5.59 3.86 </line>
<line>HIS CA 11.74 8.24 8.02 5.76 6.68 5.03 5.36 3.85 </line>
<line>ARG CA 11.01 7.32 6.22 5.12 5.11 5.29 3.85 </line>
<line>LYS CA 14.86 11.14 9.54 7.50 5.46 3.87 </line>
<line>LYS CA 15.10 11.25 9.18 5.89 3.86 </line>
<line>ASN CA 13.36 9.55 6.47 3.79 </line>
<line>LEU CA 10.14 6.42 3.83 </line>
<line>GLN CA 7.24 3.89 </line>
<line>TYR CA 3.88 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>PHE CA 238</line>
<line>HIS CA 317</line>
<line>ARG CA 282</line>
<line>LYS CA 197</line>
<line>LYS CA 246</line>
<line>ASN CA 266</line>
<line>LEU CA 365</line>
<line>GLN CA 382</line>
<line>TYR CA 447</line>
<line>TYR CA 461</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3RAN</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3RANC</entryIDChain>
<sequence>SIVFHRKKNLQYY</sequence>
<secondary-structure>HHHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4295 CA SER C 135 -0.333 27.322 31.059 1.00 37.26 C </line>
<line>ATOM 4301 CA ILE C 136 3.075 25.908 32.201 1.00 33.45 C </line>
<line>ATOM 4309 CA VAL C 137 1.461 22.484 33.004 1.00 44.00 C </line>
<line>ATOM 4316 CA PHE C 138 -0.592 22.587 29.754 1.00 50.09 C </line>
<line>ATOM 4327 CA HIS C 139 2.600 22.582 27.594 1.00 53.28 C </line>
<line>ATOM 4337 CA ARG C 140 4.731 20.164 29.743 1.00 57.31 C </line>
<line>ATOM 4348 CA LYS C 141 7.371 17.983 28.036 1.00 60.31 C </line>
<line>ATOM 4357 CA LYS C 142 8.591 14.487 28.967 1.00 56.08 C </line>
<line>ATOM 4366 CA ASN C 143 11.866 14.392 30.968 1.00 52.81 C </line>
<line>ATOM 4374 CA LEU C 144 11.937 18.188 31.503 1.00 47.28 C </line>
<line>ATOM 4382 CA GLN C 145 11.468 19.310 35.096 1.00 34.63 C </line>
<line>ATOM 4391 CA TYR C 146 9.875 22.748 35.849 1.00 27.07 C </line>
<line>ATOM 4403 CA TYR C 147 10.639 25.078 38.850 1.00 24.72 C </line>
</atom-coordinate>
<distance-map>
<line> TYR TYR GLN LEU ASN LYS LYS ARG HIS PHE VAL ILE SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 13.64 12.17 14.82 15.30 17.78 15.77 12.48 8.87 6.56 4.92 5.51 3.86 </line>
<line>ILE CA 10.11 8.34 11.06 11.77 14.54 13.09 9.93 6.46 5.70 5.52 3.87 </line>
<line>VAL CA 11.19 8.89 10.70 11.42 13.34 11.45 8.94 5.17 5.53 3.85 </line>
<line>PHE CA 14.67 12.11 13.59 13.39 14.96 12.27 9.36 5.85 3.85 </line>
<line>HIS CA 14.06 11.00 12.07 11.03 12.82 10.16 6.64 3.87 </line>
<line>ARG CA 11.92 8.39 8.65 7.68 9.26 6.91 3.83 </line>
<line>LYS CA 13.34 9.49 8.27 5.74 6.46 3.82 </line>
<line>LYS CA 14.63 10.83 8.31 5.60 3.84 </line>
<line>ASN CA 13.33 9.88 6.43 3.83 </line>
<line>LEU CA 10.16 6.63 3.79 </line>
<line>GLN CA 6.93 3.86 </line>
<line>TYR CA 3.88 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>SER CA 281</line>
<line>ILE CA 364</line>
<line>VAL CA 268</line>
<line>PHE CA 207</line>
<line>HIS CA 239</line>
<line>ARG CA 277</line>
<line>LYS CA 253</line>
<line>LYS CA 191</line>
<line>ASN CA 239</line>
<line>LEU CA 339</line>
<line>GLN CA 364</line>
<line>TYR CA 432</line>
<line>TYR CA 449</line>
</n14>
</entryChain>
<parallel>
<x>7.590000152587891</x>
<y>-3.5209999084472656</y>
<z>-2.5850000381469727</z>
</parallel>
<rotation>
<x>-0.9210000038146973</x>
<y>0.33500000834465027</y>
<z>-0.19900000095367432</z>
<x>0.2549999952316284</x>
<y>0.9039999842643738</y>
<z>0.34200000762939453</z>
<x>0.2939999997615814</x>
<y>0.2639999985694885</y>
<z>-0.9190000295639038</z>
</rotation>
<rmsd>3.4918739795684814</rmsd>
<dmax>6.805294990539551</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3RAN</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3RANC</entryIDChain>
<sequence>DRKVK---AKSIV</sequence>
<secondary-structure> ---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4237 CA ASP C 128 2.622 41.299 37.478 1.00 39.10 C </line>
<line>ATOM 4245 CA ARG C 129 2.702 37.651 36.484 1.00 36.07 C </line>
<line>ATOM 4256 CA LYS C 130 1.692 36.995 32.878 1.00 36.21 C </line>
<line>ATOM 4265 CA VAL C 131 2.697 33.291 32.526 1.00 32.86 C </line>
<line>ATOM 4272 CA LYS C 132 1.012 31.108 35.187 1.00 42.54 C </line>
<line>ATOM 4281 CA ALA C 133 1.058 27.490 36.441 1.00 42.29 C </line>
<line>ATOM 4286 CA LYS C 134 -2.006 26.337 34.408 1.00 44.08 C </line>
<line>ATOM 4295 CA SER C 135 -0.333 27.322 31.059 1.00 37.26 C </line>
<line>ATOM 4301 CA ILE C 136 3.075 25.908 32.201 1.00 33.45 C </line>
<line>ATOM 4309 CA VAL C 137 1.461 22.484 33.004 1.00 44.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE SER LYS ALA LYS VAL LYS ARG ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 19.37 16.28 15.66 15.96 13.94 10.57 9.42 6.37 3.78 </line>
<line>ARG CA 15.61 12.51 12.06 12.43 10.29 6.88 5.89 3.80 </line>
<line>LYS CA 14.51 11.19 10.05 11.38 10.17 6.36 3.85 </line>
<line>VAL CA 10.89 7.40 6.85 8.60 7.19 3.83 </line>
<line>LYS CA 8.91 6.34 5.76 5.70 3.83 </line>
<line>ALA CA 6.09 4.95 5.56 3.85 </line>
<line>LYS CA 5.37 5.56 3.87 </line>
<line>SER CA 5.51 3.86 </line>
<line>ILE CA 3.87 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASP CA 199</line>
<line>ARG CA 297</line>
<line>LYS CA 254</line>
<line>VAL CA 337</line>
<line>LYS CA 358</line>
<line>ALA CA 355</line>
<line>LYS CA 244</line>
<line>SER CA 281</line>
<line>ILE CA 364</line>
<line>VAL CA 268</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BYU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BYUA</entryIDChain>
<sequence>DRKVKAKSIVFHR</sequence>
<secondary-structure> GGGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 976 CA ASP A 128 19.871 40.504 20.626 1.00 25.15 C </line>
<line>ATOM 984 CA ARG A 129 18.824 37.057 22.010 1.00 21.64 C </line>
<line>ATOM 995 CA LYS A 130 19.665 36.134 25.623 1.00 14.85 C </line>
<line>ATOM 1004 CA VAL A 131 18.342 32.571 26.117 1.00 15.77 C </line>
<line>ATOM 1011 CA LYS A 132 19.821 30.171 23.522 1.00 22.71 C </line>
<line>ATOM 1020 CA ALA A 133 19.522 26.492 22.469 1.00 28.27 C </line>
<line>ATOM 1025 CA LYS A 134 22.102 25.193 25.011 1.00 34.77 C </line>
<line>ATOM 1034 CA SER A 135 19.899 26.337 27.995 1.00 34.11 C </line>
<line>ATOM 1040 CA ILE A 136 16.880 24.203 26.832 1.00 29.93 C </line>
<line>ATOM 1048 CA VAL A 137 18.710 20.847 27.361 1.00 25.83 C </line>
<line>ATOM 1055 CA PHE A 138 17.541 20.638 31.048 1.00 24.62 C </line>
<line>ATOM 1066 CA HIS A 139 13.838 20.835 29.983 1.00 22.83 C </line>
<line>ATOM 1076 CA ARG A 140 14.248 18.064 27.336 1.00 29.19 C </line>
</atom-coordinate>
<distance-map>
<line> ARG HIS PHE VAL ILE SER LYS ALA LYS VAL LYS ARG ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 24.09 22.60 22.55 20.81 17.70 15.97 16.08 14.14 10.73 9.77 6.64 3.86 </line>
<line>ARG CA 20.25 18.75 18.79 17.07 13.87 12.32 12.67 10.60 7.12 6.10 3.82 </line>
<line>LYS CA 18.94 16.94 16.55 15.42 12.31 10.08 11.23 10.15 6.32 3.83 </line>
<line>VAL CA 15.12 13.15 12.94 11.80 8.52 6.69 8.35 7.19 3.83 </line>
<line>LYS CA 13.86 12.83 12.36 10.14 7.43 5.89 5.67 3.84 </line>
<line>ALA CA 11.07 10.99 10.57 7.51 5.59 5.54 3.85 </line>
<line>LYS CA 10.86 10.58 8.83 5.99 5.62 3.88 </line>
<line>SER CA 10.04 8.42 6.88 5.65 3.88 </line>
<line>ILE CA 6.70 5.53 5.56 3.86 </line>
<line>VAL CA 5.26 5.53 3.87 </line>
<line>PHE CA 5.59 3.86 </line>
<line>HIS CA 3.85 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>ASP CA 192</line>
<line>ARG CA 293</line>
<line>LYS CA 259</line>
<line>VAL CA 340</line>
<line>LYS CA 369</line>
<line>ALA CA 372</line>
<line>LYS CA 275</line>
<line>SER CA 311</line>
<line>ILE CA 373</line>
<line>VAL CA 273</line>
<line>PHE CA 238</line>
<line>HIS CA 317</line>
<line>ARG CA 282</line>
</n14>
</entryChain>
<parallel>
<x>-17.525999069213867</x>
<y>2.4210000038146973</y>
<z>9.164999961853027</z>
</parallel>
<rotation>
<x>-0.9279999732971191</x>
<y>0.35600000619888306</y>
<z>-0.10899999737739563</z>
<x>0.3700000047683716</x>
<y>0.9179999828338623</y>
<z>-0.1459999978542328</z>
<x>0.04899999871850014</x>
<y>-0.17599999904632568</y>
<z>-0.9829999804496765</z>
</rotation>
<rmsd>2.7494800090789795</rmsd>
<dmax>4.9565629959106445</dmax>
</indel>