NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BZ7B-1LMKC
confEVID 1BZ7B-1LMKC
pdbIDA 1BZ7
pdbIDB 1LMK
pdbChainA B
pdbChainB C
identity 0.252000004053116
indelSize 3
alignment <alignment>
<seq1>DVQLVESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYFDYWGQGATLIVSSASTK-GPSVFPLAPSSKSTSGGTAALGCLVK------------DYFPEPV-----TVSWNSGALT------SGVHTFPAVLQSGLYSLSSVVTVPSSSLGTQTYICNVN------HKPSNTKVDK</seq1>
<seq2>-VQLQQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCARGEDYYAYWYVLDYWGQGTTVTVSSGGGGSDIELTQS--PLSLPVSLGDQASISCRSSQSLVHSNGNTSLHWYLKKPGQSPKLLIYKVSTRFSGVPDRFS-----GSGSGTDFTLKIS-RVEAEDLGVYFCSQSTHVPFTFGSGTKLELK</seq2>
<ss_1> EEEEE EEE EEEEEEEE GGG EEEEEEE EEEEEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEEEE EEEE - EEEEE EEEEEEEE------------EEE ----- ------EEEE EEEEEEEEEEEEEEE EEEE------ EEEEE </ss_1>
<ss_2>- EE EEE EEEEEE EEEEEEE EEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEE EEEEE EEEEE-- EEEEEE EEEEEEEE EEEE EEE-----EEEEEEEEEEEE - GGG EEEEEEE EE EEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BZ7</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BZ7B</entryIDChain>
<sequence>FPEPV-----TVSWN</sequence>
<secondary-structure>E ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 2754 CA PHE B 155 47.784 70.665 13.443 1.00 17.24 C </line>
<line>ATOM 2765 CA PRO B 156 50.126 68.850 14.287 1.00 13.25 C </line>
<line>ATOM 2772 CA GLU B 157 49.213 66.647 17.149 1.00 21.89 C </line>
<line>ATOM 2781 CA PRO B 158 49.132 66.829 20.113 1.00 15.74 C </line>
<line>ATOM 2788 CA VAL B 159 46.611 68.884 22.073 1.00 11.50 C </line>
<line>ATOM 2795 CA THR B 160 46.320 68.105 25.823 1.00 18.65 C </line>
<line>ATOM 2802 CA VAL B 161 42.967 68.393 27.700 1.00 29.78 C </line>
<line>ATOM 2809 CA SER B 162 42.252 68.717 31.481 1.00 39.60 C </line>
<line>ATOM 2815 CA TRP B 163 39.179 69.908 33.506 1.00 41.71 C </line>
<line>ATOM 2829 CA ASN B 164 38.815 68.926 37.119 1.00 70.82 C </line>
</atom-coordinate>
<distance-map>
<line> ASN TRP SER VAL THR VAL PRO GLU PRO PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 25.38 21.84 18.97 15.22 12.73 8.89 7.81 5.65 3.08 </line>
<line>PRO CA 25.48 22.14 18.91 15.21 12.17 8.54 6.25 3.73 </line>
<line>GLU CA 22.63 19.46 16.07 12.38 9.26 6.00 2.97 </line>
<line>PRO CA 20.00 16.97 13.42 9.90 6.49 3.80 </line>
<line>VAL CA 16.95 13.67 10.37 6.72 3.84 </line>
<line>THR CA 13.59 10.64 7.00 3.85 </line>
<line>VAL CA 10.31 7.10 3.86 </line>
<line>SER CA 6.61 3.87 </line>
<line>TRP CA 3.76 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>PHE CA 323</line>
<line>PRO CA 342</line>
<line>GLU CA 356</line>
<line>PRO CA 319</line>
<line>VAL CA 344</line>
<line>THR CA 324</line>
<line>VAL CA 363</line>
<line>SER CA 302</line>
<line>TRP CA 310</line>
<line>ASN CA 245</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1LMKC</entryIDChain>
<sequence>HWYLKKPGQSPKLLI</sequence>
<secondary-structure>EEEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3098 CA HIS C 239 -19.806 9.081 -19.972 1.00 6.08 C </line>
<line>ATOM 3108 CA TRP C 240 -17.722 11.936 -21.312 1.00 8.39 C </line>
<line>ATOM 3122 CA TYR C 241 -15.860 14.718 -19.511 1.00 7.79 C </line>
<line>ATOM 3134 CA LEU C 242 -14.057 17.869 -20.620 1.00 4.86 C </line>
<line>ATOM 3142 CA LYS C 243 -11.054 18.741 -18.450 1.00 8.59 C </line>
<line>ATOM 3151 CA LYS C 244 -9.878 22.352 -18.765 1.00 15.19 C </line>
<line>ATOM 3160 CA PRO C 245 -6.831 23.409 -16.563 1.00 21.90 C </line>
<line>ATOM 3167 CA GLY C 246 -7.780 24.964 -13.283 1.00 16.80 C </line>
<line>ATOM 3171 CA GLN C 247 -11.310 23.520 -13.588 1.00 11.89 C </line>
<line>ATOM 3180 CA SER C 248 -12.846 20.274 -12.403 1.00 11.09 C </line>
<line>ATOM 3186 CA PRO C 249 -14.039 17.701 -14.864 1.00 5.61 C </line>
<line>ATOM 3193 CA LYS C 250 -17.239 19.053 -16.581 1.00 5.12 C </line>
<line>ATOM 3202 CA LEU C 251 -19.625 16.192 -17.483 1.00 12.27 C </line>
<line>ATOM 3210 CA LEU C 252 -21.183 16.424 -20.968 1.00 10.87 C </line>
<line>ATOM 3218 CA ILE C 253 -22.870 13.259 -22.073 1.00 6.53 C </line>
</atom-coordinate>
<distance-map>
<line> ILE LEU LEU LYS PRO SER GLN GLY PRO LYS LYS LEU TYR TRP HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 5.59 7.54 7.54 10.84 11.56 15.20 17.93 21.02 19.63 16.62 13.12 10.52 6.90 3.78 </line>
<line>TRP CA 5.37 5.68 6.03 8.56 9.40 13.14 15.33 18.25 16.52 13.29 9.95 7.01 3.80 </line>
<line>TYR CA 7.60 5.78 4.52 5.41 5.81 9.51 11.54 14.46 12.87 9.73 6.36 3.80 </line>
<line>LEU CA 10.05 7.28 6.61 5.28 5.76 8.65 9.43 11.98 9.97 6.40 3.81 </line>
<line>LYS CA 13.52 10.69 8.99 6.47 4.78 6.49 6.82 8.73 6.57 3.81 </line>
<line>LYS CA 16.20 12.95 11.60 8.36 7.36 7.32 5.50 6.42 3.91 </line>
<line>PRO CA 19.76 16.56 14.72 11.28 9.35 7.96 5.38 3.75 </line>
<line>GLY CA 21.02 17.65 15.33 11.63 9.72 6.96 3.83 </line>
<line>GLN CA 17.63 14.22 11.75 8.00 6.55 3.78 </line>
<line>SER CA 15.59 12.56 9.40 6.18 3.76 </line>
<line>PRO CA 12.23 9.48 6.35 3.88 </line>
<line>LYS CA 9.77 6.46 3.83 </line>
<line>LEU CA 6.34 3.82 </line>
<line>LEU CA 3.75 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>HIS CA 460</line>
<line>TRP CA 491</line>
<line>TYR CA 451</line>
<line>LEU CA 419</line>
<line>LYS CA 285</line>
<line>LYS CA 227</line>
<line>PRO CA 149</line>
<line>GLY CA 97</line>
<line>GLN CA 139</line>
<line>SER CA 158</line>
<line>PRO CA 262</line>
<line>LYS CA 301</line>
<line>LEU CA 360</line>
<line>LEU CA 390</line>
<line>ILE CA 384</line>
</n14>
</entryChain>
<parallel>
<x>62.97600173950195</x>
<y>52.724998474121094</y>
<z>40.108001708984375</z>
</parallel>
<rotation>
<x>0.9409999847412109</x>
<y>-0.1379999965429306</y>
<z>0.3100000023841858</z>
<x>-0.32499998807907104</x>
<y>-0.6299999952316284</y>
<z>0.7059999704360962</z>
<x>-0.09799999743700027</x>
<y>0.7639999985694885</y>
<z>0.6370000243186951</z>
</rotation>
<rmsd>5.017353057861328</rmsd>
<dmax>10.030350685119629</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1LMKC</entryIDChain>
<sequence>ELTQS--PLSLP</sequence>
<secondary-structure>EEEEE-- </secondary-structure>
<atom-coordinate>
<line>ATOM 2840 CA GLU C 203 -9.566 -0.457 -20.597 1.00 20.01 C </line>
<line>ATOM 2849 CA LEU C 204 -10.970 2.411 -22.541 1.00 13.07 C </line>
<line>ATOM 2857 CA THR C 205 -9.151 3.200 -25.797 1.00 18.35 C </line>
<line>ATOM 2864 CA GLN C 206 -9.597 6.795 -26.986 1.00 21.37 C </line>
<line>ATOM 2873 CA SER C 207 -8.671 7.948 -30.550 1.00 25.56 C </line>
<line>ATOM 2879 CA PRO C 208 -7.311 10.358 -31.706 1.00 25.43 C </line>
<line>ATOM 2886 CA LEU C 209 -5.120 11.157 -28.714 1.00 19.66 C </line>
<line>ATOM 2894 CA SER C 210 -4.668 14.492 -30.401 1.00 22.79 C </line>
<line>ATOM 2900 CA LEU C 211 -7.255 16.276 -32.477 1.00 28.33 C </line>
<line>ATOM 2908 CA PRO C 212 -6.067 19.461 -34.049 1.00 29.14 C </line>
</atom-coordinate>
<distance-map>
<line> PRO LEU SER LEU PRO SER GLN THR LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 24.29 20.65 18.54 14.85 15.67 13.06 9.66 6.37 3.74 </line>
<line>LEU CA 21.15 17.46 15.73 12.20 12.67 10.00 6.39 3.81 </line>
<line>THR CA 18.49 14.81 12.99 9.38 9.46 6.74 3.81 </line>
<line>GLN CA 14.93 11.20 9.76 6.49 6.34 3.86 </line>
<line>SER CA 12.31 8.66 7.67 5.13 3.00 </line>
<line>PRO CA 9.48 5.97 5.08 3.79 </line>
<line>LEU CA 9.92 6.70 3.76 </line>
<line>SER CA 6.32 3.77 </line>
<line>LEU CA 3.75 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 291</line>
<line>LEU CA 368</line>
<line>THR CA 299</line>
<line>GLN CA 334</line>
<line>SER CA 276</line>
<line>PRO CA 259</line>
<line>LEU CA 242</line>
<line>SER CA 234</line>
<line>LEU CA 288</line>
<line>PRO CA 228</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BZ7</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BZ7B</entryIDChain>
<sequence>SVFPLAPSSKST</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2576 CA SER B 129 39.117 76.087 17.859 1.00 27.06 C </line>
<line>ATOM 2582 CA VAL B 130 37.612 74.773 21.115 1.00 23.18 C </line>
<line>ATOM 2589 CA PHE B 131 33.761 74.655 21.412 1.00 18.88 C </line>
<line>ATOM 2600 CA PRO B 132 31.563 73.516 24.383 1.00 27.16 C </line>
<line>ATOM 2607 CA LEU B 133 29.541 70.282 24.341 1.00 29.14 C </line>
<line>ATOM 2615 CA ALA B 134 26.464 70.891 26.290 1.00 42.64 C </line>
<line>ATOM 2620 CA PRO B 135 24.352 68.767 28.676 1.00 66.70 C </line>
<line>ATOM 2627 CA SER B 136 20.834 70.158 29.170 1.00 87.89 C </line>
<line>ATOM 2633 CA SER B 137 19.717 70.866 32.782 1.00 93.07 C </line>
<line>ATOM 2639 CA LYS B 138 19.101 67.537 34.697 1.00 92.58 C </line>
<line>ATOM 2648 CA SER B 139 20.616 65.964 31.822 1.00 87.99 C </line>
<line>ATOM 2654 CA THR B 140 20.453 63.295 29.316 1.00 82.81 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER LYS SER SER PRO ALA LEU PRO PHE VAL SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 25.36 25.29 27.52 25.03 22.30 19.71 16.07 12.94 10.31 6.58 3.82 </line>
<line>VAL CA 22.21 21.93 24.07 21.72 19.18 16.40 12.89 9.78 6.99 3.86 </line>
<line>PHE CA 19.20 18.89 21.03 18.46 15.73 13.27 9.55 6.75 3.87 </line>
<line>PRO CA 15.88 15.24 17.25 14.76 12.22 9.64 6.04 3.81 </line>
<line>LEU CA 12.50 12.42 14.96 12.97 9.96 6.93 3.69 </line>
<line>ALA CA 10.15 9.44 11.67 9.36 6.37 3.83 </line>
<line>PRO CA 6.75 5.63 8.08 6.54 3.82 </line>
<line>SER CA 6.88 4.97 6.36 3.85 </line>
<line>SER CA 8.36 5.08 3.89 </line>
<line>LYS CA 6.98 3.61 </line>
<line>SER CA 3.66 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>SER CA 297</line>
<line>VAL CA 325</line>
<line>PHE CA 262</line>
<line>PRO CA 276</line>
<line>LEU CA 291</line>
<line>ALA CA 257</line>
<line>PRO CA 252</line>
<line>SER CA 190</line>
<line>SER CA 174</line>
<line>LYS CA 164</line>
<line>SER CA 180</line>
<line>THR CA 155</line>
</n14>
</entryChain>
<parallel>
<x>-37.0369987487793</x>
<y>-65.24600219726562</y>
<z>-52.88100051879883</z>
</parallel>
<rotation>
<x>-0.5540000200271606</x>
<y>-0.20900000631809235</y>
<z>0.8059999942779541</z>
<x>0.8019999861717224</x>
<y>-0.39399999380111694</y>
<z>0.4490000009536743</z>
<x>0.2240000069141388</x>
<y>0.8949999809265137</y>
<z>0.38600000739097595</z>
</rotation>
<rmsd>4.256616115570068</rmsd>
<dmax>6.466545104980469</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1LMKC</entryIDChain>
<sequence>TLKIS-RVEAE</sequence>
<secondary-structure>EEEE - GG</secondary-structure>
<atom-coordinate>
<line>ATOM 3399 CA THR C 277 -18.301 8.326 -30.097 1.00 7.55 C </line>
<line>ATOM 3406 CA LEU C 278 -18.379 11.946 -28.934 1.00 12.81 C </line>
<line>ATOM 3414 CA LYS C 279 -19.179 14.583 -31.529 1.00 16.26 C </line>
<line>ATOM 3423 CA ILE C 280 -19.003 18.352 -31.335 1.00 22.60 C </line>
<line>ATOM 3431 CA SER C 281 -20.839 19.820 -34.290 1.00 28.20 C </line>
<line>ATOM 3437 CA ARG C 282 -18.904 23.083 -34.448 1.00 28.57 C </line>
<line>ATOM 3448 CA VAL C 283 -15.802 23.648 -32.345 1.00 22.35 C </line>
<line>ATOM 3455 CA GLU C 284 -15.709 26.839 -30.245 1.00 22.82 C </line>
<line>ATOM 3464 CA ALA C 285 -12.890 28.400 -28.253 1.00 23.41 C </line>
<line>ATOM 3469 CA GLU C 286 -14.348 27.216 -24.925 1.00 28.76 C </line>
</atom-coordinate>
<distance-map>
<line> GLU ALA GLU VAL ARG SER ILE LYS LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 19.98 20.87 18.69 15.69 15.40 12.50 10.13 6.48 3.80 </line>
<line>LEU CA 16.29 17.36 15.19 12.46 12.44 9.84 6.87 3.79 </line>
<line>LYS CA 15.05 15.53 12.80 9.71 8.99 6.15 3.78 </line>
<line>ILE CA 11.89 12.16 9.17 6.27 5.66 3.78 </line>
<line>SER CA 13.58 13.16 9.59 6.62 3.80 </line>
<line>ARG CA 11.34 10.14 6.48 3.79 </line>
<line>VAL CA 8.36 6.91 3.82 </line>
<line>GLU CA 5.50 3.79 </line>
<line>ALA CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>THR CA 373</line>
<line>LEU CA 457</line>
<line>LYS CA 393</line>
<line>ILE CA 373</line>
<line>SER CA 257</line>
<line>ARG CA 249</line>
<line>VAL CA 287</line>
<line>GLU CA 256</line>
<line>ALA CA 241</line>
<line>GLU CA 268</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BZ7</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BZ7B</entryIDChain>
<sequence>SSVVTVPSSSL</sequence>
<secondary-structure>EEEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2992 CA SER B 187 36.614 65.636 22.151 1.00 15.69 C </line>
<line>ATOM 2998 CA SER B 188 37.076 65.420 25.885 1.00 17.51 C </line>
<line>ATOM 3004 CA VAL B 189 33.787 64.539 27.750 1.00 18.55 C </line>
<line>ATOM 3011 CA VAL B 190 33.505 64.121 31.548 1.00 21.26 C </line>
<line>ATOM 3018 CA THR B 191 30.435 62.391 33.160 1.00 25.26 C </line>
<line>ATOM 3025 CA VAL B 192 29.205 64.159 36.189 1.00 39.53 C </line>
<line>ATOM 3032 CA PRO B 193 25.828 63.749 38.005 1.00 55.58 C </line>
<line>ATOM 3039 CA SER B 194 23.058 66.097 36.802 1.00 58.53 C </line>
<line>ATOM 3045 CA SER B 195 23.269 67.646 40.384 1.00 65.13 C </line>
<line>ATOM 3051 CA SER B 196 26.379 69.516 39.407 1.00 60.10 C </line>
<line>ATOM 3057 CA LEU B 197 25.195 71.491 36.418 1.00 63.24 C </line>
</atom-coordinate>
<distance-map>
<line> LEU SER SER SER PRO VAL THR VAL VAL SER SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 19.19 20.43 22.68 19.97 19.27 15.94 13.03 10.01 6.37 3.77 </line>
<line>SER CA 17.00 17.72 20.14 17.78 16.62 13.03 10.31 6.82 3.88 </line>
<line>VAL CA 14.05 14.68 16.73 14.12 13.01 9.61 6.72 3.83 </line>
<line>VAL CA 12.13 11.90 13.97 11.86 10.04 6.33 3.88 </line>
<line>THR CA 10.99 10.31 11.45 9.02 6.82 3.72 </line>
<line>VAL CA 8.36 6.86 8.06 6.47 3.86 </line>
<line>PRO CA 7.93 5.96 5.23 3.83 </line>
<line>SER CA 5.81 5.43 3.91 </line>
<line>SER CA 5.85 3.76 </line>
<line>SER CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>SER CA 348</line>
<line>SER CA 366</line>
<line>VAL CA 335</line>
<line>VAL CA 345</line>
<line>THR CA 307</line>
<line>VAL CA 294</line>
<line>PRO CA 225</line>
<line>SER CA 206</line>
<line>SER CA 183</line>
<line>SER CA 236</line>
<line>LEU CA 234</line>
</n14>
</entryChain>
<parallel>
<x>-48.71099853515625</x>
<y>-46.625</y>
<z>-63.61399841308594</z>
</parallel>
<rotation>
<x>-0.7179999947547913</x>
<y>-0.48899999260902405</y>
<z>0.4959999918937683</z>
<x>0.5239999890327454</x>
<y>0.08900000154972076</y>
<z>0.847000002861023</z>
<x>-0.4580000042915344</x>
<y>0.8679999709129333</y>
<z>0.19200000166893005</z>
</rotation>
<rmsd>2.37480092048645</rmsd>
<dmax>3.058928966522217</dmax>
</indel>