NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1C4ZD-2ESPA
confEVID 1C4ZD-2ESPA
pdbIDA 1C4Z
pdbIDB 2ESP
pdbChainA D
pdbChainB A
identity 0.372399985790253
indelSize 3
alignment <alignment>
<seq1>---SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVP-DNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY--</seq1>
<seq2>AMALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALR-SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM</seq2>
<ss_1>--- HHHHGGG EEEEE EEEEEEEEE - EEEEEE EEEEE HHHH HHHHHH HHHHHHHH HHHHHHHH --</ss_1>
<ss_2> HHHHHHHHHHHHHH EEEEE -EEEEEEEEEEE EEEEEEEE EEE - HHHHHHHHHHHHH HHHHHHH HHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1C4Z</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1C4ZD</entryIDChain>
<sequence>GLIVP-DNPPY</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 8843 CA GLY D 37 85.250 -36.337 67.494 1.00 80.97 C </line>
<line>ATOM 8847 CA LEU D 38 82.830 -38.795 69.144 1.00 83.61 C </line>
<line>ATOM 8855 CA ILE D 39 81.008 -38.434 72.465 1.00 83.57 C </line>
<line>ATOM 8863 CA VAL D 40 80.063 -41.803 73.937 1.00 81.25 C </line>
<line>ATOM 8870 CA PRO D 41 77.121 -41.217 76.342 1.00 84.25 C </line>
<line>ATOM 8877 CA ASP D 42 76.538 -43.671 79.182 1.00 90.24 C </line>
<line>ATOM 8882 CA ASN D 43 73.060 -43.611 80.761 1.00 96.77 C </line>
<line>ATOM 8887 CA PRO D 44 69.966 -41.896 79.234 1.00 99.71 C </line>
<line>ATOM 8894 CA PRO D 45 68.185 -42.901 75.964 1.00 95.75 C </line>
<line>ATOM 8901 CA TYR D 46 71.378 -42.006 74.114 1.00 96.02 C </line>
</atom-coordinate>
<distance-map>
<line> TYR PRO PRO ASN ASP PRO VAL ILE LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 16.38 20.15 20.06 19.43 16.32 12.97 9.91 6.86 3.82 </line>
<line>LEU CA 12.89 16.67 16.64 15.92 12.81 9.50 6.30 3.81 </line>
<line>ILE CA 10.40 14.02 13.41 12.60 9.62 6.16 3.80 </line>
<line>VAL CA 8.69 12.10 11.40 9.94 6.59 3.84 </line>
<line>PRO CA 6.21 9.10 7.75 6.46 3.80 </line>
<line>ASP CA 7.42 8.98 6.81 3.82 </line>
<line>ASN CA 7.04 6.88 3.85 </line>
<line>PRO CA 5.31 3.86 </line>
<line>PRO CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>GLY CA 353</line>
<line>LEU CA 341</line>
<line>ILE CA 387</line>
<line>VAL CA 320</line>
<line>PRO CA 326</line>
<line>ASP CA 233</line>
<line>ASN CA 232</line>
<line>PRO CA 304</line>
<line>PRO CA 332</line>
<line>TYR CA 371</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ESP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ESPA</entryIDChain>
<sequence>ATIMGPNDSPY</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 289 CA ALA A 35 20.568 2.126 59.679 1.00 13.33 C </line>
<line>ATOM 294 CA THR A 36 16.932 2.499 58.907 1.00 15.86 C </line>
<line>ATOM 301 CA ILE A 37 14.088 0.060 59.505 1.00 15.01 C </line>
<line>ATOM 309 CA MET A 38 10.585 0.620 58.011 1.00 15.84 C </line>
<line>ATOM 317 CA GLY A 39 7.767 -0.214 60.444 1.00 17.73 C </line>
<line>ATOM 321 CA PRO A 40 6.543 -3.674 59.488 1.00 16.85 C </line>
<line>ATOM 328 CA ASN A 41 3.281 -3.912 57.630 1.00 16.52 C </line>
<line>ATOM 336 CA ASP A 42 0.435 -5.186 59.829 1.00 17.44 C </line>
<line>ATOM 344 CA SER A 43 2.250 -3.901 63.005 1.00 16.46 C </line>
<line>ATOM 350 CA PRO A 44 1.371 -0.710 64.912 1.00 16.57 C </line>
<line>ATOM 357 CA TYR A 45 4.618 0.753 63.419 1.00 16.75 C </line>
</atom-coordinate>
<distance-map>
<line> TYR PRO SER ASP ASN PRO GLY MET ILE THR ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 16.44 20.10 19.57 21.42 18.43 15.18 13.04 10.23 6.80 3.74 </line>
<line>THR CA 13.23 16.99 16.53 18.22 15.14 12.10 9.68 6.68 3.79 </line>
<line>ILE CA 10.27 13.84 12.96 14.63 11.67 8.42 6.40 3.85 </line>
<line>MET CA 8.05 11.59 10.72 11.83 8.60 6.08 3.82 </line>
<line>GLY CA 4.44 7.82 7.11 8.88 6.46 3.79 </line>
<line>PRO CA 6.23 8.06 5.55 6.30 3.76 </line>
<line>ASN CA 7.55 8.18 5.47 3.82 </line>
<line>ASP CA 8.10 6.84 3.88 </line>
<line>SER CA 5.24 3.82 </line>
<line>PRO CA 3.86 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 391</line>
<line>THR CA 369</line>
<line>ILE CA 392</line>
<line>MET CA 337</line>
<line>GLY CA 370</line>
<line>PRO CA 296</line>
<line>ASN CA 203</line>
<line>ASP CA 207</line>
<line>SER CA 317</line>
<line>PRO CA 367</line>
<line>TYR CA 396</line>
</n14>
</entryChain>
<parallel>
<x>68.74099731445312</x>
<y>-39.731998443603516</y>
<z>15.194000244140625</z>
</parallel>
<rotation>
<x>0.652999997138977</x>
<y>0.6169999837875366</y>
<z>-0.43799999356269836</z>
<x>-0.014999999664723873</x>
<y>-0.5680000185966492</y>
<z>-0.8230000138282776</z>
<x>-0.7570000290870667</x>
<y>0.5440000295639038</y>
<z>-0.3619999885559082</z>
</rotation>
<rmsd>1.2288429737091064</rmsd>
<dmax>1.9041169881820679</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2ESP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ESPA</entryIDChain>
<sequence>GPVGD-DMFHW</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 192 CA GLY A 24 25.981 1.665 55.985 1.00 12.90 C </line>
<line>ATOM 196 CA PRO A 25 28.694 4.128 56.970 1.00 13.86 C </line>
<line>ATOM 204 CA AVAL A 26 27.629 7.656 58.035 0.50 16.26 C </line>
<line>ATOM 217 CA GLY A 27 30.236 9.539 55.863 1.00 17.17 C </line>
<line>ATOM 221 CA ASP A 28 33.692 7.929 55.433 1.00 19.83 C </line>
<line>ATOM 229 CA ASP A 29 33.919 6.253 58.861 1.00 20.62 C </line>
<line>ATOM 237 CA MET A 30 33.595 2.511 58.295 1.00 17.56 C </line>
<line>ATOM 245 CA PHE A 31 33.148 1.840 61.990 1.00 15.76 C </line>
<line>ATOM 256 CA HIS A 32 30.207 4.165 62.486 1.00 16.63 C </line>
<line>ATOM 266 CA TRP A 33 27.074 3.296 60.569 1.00 15.53 C </line>
</atom-coordinate>
<distance-map>
<line> TRP HIS PHE MET ASP ASP GLY VAL PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 4.99 8.15 9.35 8.00 9.61 9.95 8.95 6.54 3.79 </line>
<line>PRO CA 4.03 5.72 7.09 5.33 5.95 6.46 5.73 3.84 </line>
<line>VAL CA 5.07 6.22 8.94 7.88 6.50 6.60 3.88 </line>
<line>GLY CA 8.43 8.53 10.26 8.16 5.77 3.84 </line>
<line>ASP CA 9.57 8.72 8.96 6.13 3.82 </line>
<line>ASP CA 7.65 5.59 5.46 3.80 </line>
<line>MET CA 6.95 5.64 3.78 </line>
<line>PHE CA 6.41 3.78 </line>
<line>HIS CA 3.77 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>GLY CA 363</line>
<line>PRO CA 294</line>
<line>VAL CA 213</line>
<line>GLY CA 146</line>
<line>ASP CA 149</line>
<line>ASP CA 199</line>
<line>MET CA 277</line>
<line>PHE CA 312</line>
<line>HIS CA 299</line>
<line>TRP CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1C4Z</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1C4ZD</entryIDChain>
<sequence>IQVDEANLLTW</sequence>
<secondary-structure>E EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 8750 CA ILE D 25 91.096 -36.106 65.578 1.00106.98 C </line>
<line>ATOM 8758 CA GLN D 26 91.433 -33.372 62.925 1.00112.43 C </line>
<line>ATOM 8767 CA VAL D 27 88.755 -33.986 60.261 1.00113.33 C </line>
<line>ATOM 8774 CA ASP D 28 90.699 -31.823 57.802 1.00117.93 C </line>
<line>ATOM 8782 CA GLU D 29 94.344 -32.138 58.877 1.00117.30 C </line>
<line>ATOM 8787 CA ALA D 30 96.174 -28.820 58.354 1.00113.84 C </line>
<line>ATOM 8792 CA ASN D 31 95.388 -25.735 60.489 1.00108.11 C </line>
<line>ATOM 8797 CA LEU D 32 94.182 -27.101 63.871 1.00102.10 C </line>
<line>ATOM 8805 CA LEU D 33 91.139 -24.848 64.279 1.00 96.97 C </line>
<line>ATOM 8813 CA THR D 34 88.526 -27.522 63.527 1.00 92.17 C </line>
<line>ATOM 8820 CA TRP D 35 88.438 -30.739 65.596 1.00 85.52 C </line>
</atom-coordinate>
<distance-map>
<line> TRP THR LEU LEU ASN ALA GLU ASP VAL GLN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.99 9.19 11.33 9.67 12.32 11.45 8.44 8.89 6.18 3.82 </line>
<line>GLN CA 4.80 6.56 8.64 6.91 8.94 8.01 5.14 5.40 3.83 </line>
<line>VAL CA 6.25 7.25 10.26 9.48 10.59 9.24 6.05 3.81 </line>
<line>ASP CA 8.19 7.48 9.53 8.44 8.14 6.27 3.81 </line>
<line>GLU CA 9.05 8.76 9.62 7.09 6.68 3.83 </line>
<line>ALA CA 10.77 9.32 8.73 6.11 3.83 </line>
<line>ASN CA 9.97 7.71 5.76 3.84 </line>
<line>LEU CA 7.01 5.68 3.81 </line>
<line>LEU CA 6.61 3.81 </line>
<line>THR CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 272</line>
<line>GLN CA 241</line>
<line>VAL CA 216</line>
<line>ASP CA 159</line>
<line>GLU CA 149</line>
<line>ALA CA 133</line>
<line>ASN CA 183</line>
<line>LEU CA 261</line>
<line>LEU CA 307</line>
<line>THR CA 308</line>
<line>TRP CA 365</line>
</n14>
</entryChain>
<parallel>
<x>-61.268001556396484</x>
<y>35.82899856567383</y>
<z>-4.080999851226807</z>
</parallel>
<rotation>
<x>0.6909999847412109</x>
<y>-0.2529999911785126</y>
<z>-0.6769999861717224</z>
<x>0.6840000152587891</x>
<y>-0.07100000232458115</y>
<z>0.7260000109672546</z>
<x>-0.23199999332427979</x>
<y>-0.9649999737739563</y>
<z>0.12399999797344208</z>
</rotation>
<rmsd>1.6278640031814575</rmsd>
<dmax>3.019965887069702</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2ESP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ESPA</entryIDChain>
<sequence>LDALR-SQWSP</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 701 CA LEU A 86 18.227 -8.081 72.339 1.00 15.74 C </line>
<line>ATOM 709 CA ASP A 87 20.291 -11.009 73.476 1.00 15.58 C </line>
<line>ATOM 717 CA ALA A 88 22.205 -11.152 70.189 1.00 15.47 C </line>
<line>ATOM 722 CA LEU A 89 23.832 -7.770 71.042 1.00 14.99 C </line>
<line>ATOM 730 CA ARG A 90 25.042 -9.027 74.426 1.00 17.76 C </line>
<line>ATOM 741 CA SER A 91 25.390 -12.523 75.908 1.00 16.96 C </line>
<line>ATOM 747 CA GLN A 92 24.359 -14.218 72.626 1.00 17.62 C </line>
<line>ATOM 756 CA TRP A 93 26.725 -12.595 70.063 1.00 15.61 C </line>
<line>ATOM 770 CA SER A 94 28.563 -14.918 67.589 1.00 15.10 C </line>
<line>ATOM 776 CA PRO A 95 30.873 -13.929 64.650 1.00 15.24 C </line>
</atom-coordinate>
<distance-map>
<line> PRO SER TRP GLN SER ARG LEU ALA ASP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 15.91 13.27 9.89 8.68 9.15 7.19 5.76 5.47 3.76 </line>
<line>ASP CA 14.09 10.88 7.45 5.25 5.85 5.23 5.38 3.81 </line>
<line>ALA CA 10.65 7.83 4.75 4.47 6.69 5.52 3.85 </line>
<line>LEU CA 11.33 9.24 5.71 6.66 6.98 3.81 </line>
<line>ARG CA 12.39 9.69 5.88 5.54 3.81 </line>
<line>SER CA 12.60 9.22 6.00 3.84 </line>
<line>GLN CA 10.30 6.60 3.85 </line>
<line>TRP CA 6.95 3.86 </line>
<line>SER CA 3.87 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 353</line>
<line>ASP CA 271</line>
<line>ALA CA 307</line>
<line>LEU CA 341</line>
<line>ARG CA 246</line>
<line>SER CA 163</line>
<line>GLN CA 195</line>
<line>TRP CA 259</line>
<line>SER CA 224</line>
<line>PRO CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1C4Z</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1C4ZD</entryIDChain>
<sequence>LPVISAENWKP</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 9228 CA LEU D 87 76.135 -25.085 76.442 1.00 76.51 C </line>
<line>ATOM 9236 CA PRO D 88 76.626 -21.973 78.647 1.00 77.57 C </line>
<line>ATOM 9243 CA VAL D 89 80.254 -22.699 79.590 1.00 67.56 C </line>
<line>ATOM 9250 CA ILE D 90 81.168 -21.418 76.126 1.00 68.50 C </line>
<line>ATOM 9258 CA SER D 91 78.222 -19.347 74.962 1.00 77.30 C </line>
<line>ATOM 9264 CA ALA D 92 79.486 -15.859 75.940 1.00 78.80 C </line>
<line>ATOM 9269 CA GLU D 93 78.435 -14.033 79.093 1.00 78.51 C </line>
<line>ATOM 9274 CA ASN D 94 80.199 -16.950 80.768 1.00 76.66 C </line>
<line>ATOM 9282 CA TRP D 95 83.214 -17.641 78.591 1.00 71.38 C </line>
<line>ATOM 9296 CA LYS D 96 86.567 -17.276 80.337 1.00 70.10 C </line>
<line>ATOM 9305 CA PRO D 97 90.017 -17.274 78.667 1.00 64.96 C </line>
</atom-coordinate>
<distance-map>
<line> PRO LYS TRP ASN GLU ALA SER ILE VAL PRO LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 16.08 13.60 10.49 10.07 11.60 9.83 6.28 6.24 5.71 3.85 </line>
<line>PRO CA 14.19 11.12 7.88 6.52 8.16 7.27 4.80 5.22 3.82 </line>
<line>VAL CA 11.21 8.36 5.94 5.87 8.87 7.79 6.06 3.80 </line>
<line>ILE CA 10.10 8.00 4.95 6.52 8.41 5.81 3.78 </line>
<line>SER CA 12.54 10.14 6.40 6.59 6.73 3.84 </line>
<line>ALA CA 10.97 8.45 4.91 5.00 3.79 </line>
<line>GLU CA 12.03 8.84 6.01 3.80 </line>
<line>ASN CA 10.05 6.39 3.78 </line>
<line>TRP CA 6.81 3.80 </line>
<line>LYS CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 363</line>
<line>PRO CA 281</line>
<line>VAL CA 290</line>
<line>ILE CA 322</line>
<line>SER CA 277</line>
<line>ALA CA 197</line>
<line>GLU CA 130</line>
<line>ASN CA 172</line>
<line>TRP CA 247</line>
<line>LYS CA 216</line>
<line>PRO CA 241</line>
</n14>
</entryChain>
<parallel>
<x>-56.02299880981445</x>
<y>9.095999717712402</y>
<z>-5.519000053405762</z>
</parallel>
<rotation>
<x>0.6129999756813049</x>
<y>-0.012000000104308128</y>
<z>-0.7900000214576721</z>
<x>0.7229999899864197</x>
<y>-0.39399999380111694</y>
<z>0.5680000185966492</z>
<x>-0.3179999887943268</x>
<y>-0.9190000295639038</y>
<z>-0.2329999953508377</z>
</rotation>
<rmsd>1.1078319549560547</rmsd>
<dmax>2.020801067352295</dmax>
</indel>