NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1C5QA-3BSQA
confEVID 1C5QA-3BSQA
pdbIDA 1C5Q
pdbIDB 3BSQ
pdbChainA A
pdbChainB A
identity 0.435600012540817
indelSize 3
alignment <alignment>
<seq1>IVGGYTCGANTVPYQVSLNSG-YHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN</seq1>
<seq2>IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRA--QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKHH</seq2>
<ss_1> EEEEEE - EEEEE EEEEE GGG EEEEE EEEE EEEEE EEEEE EEEEEEE EEEEEEEE HHHHHHH EEEEE EEE EEEEE EEEEEEEE - EEEEEEEEHHHHHHHHHHHH </ss_1>
<ss_2> EEEEEEE EEEEEEEEEEEEE GGG EEEEE EE --EEEEEEEEEEE EEEE EEEEEEE EEEEEEEEE HHHHHHHH EEE EEE EEEEE HHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1C5Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5QA</entryIDChain>
<sequence>SLNSG-YHFCG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 227 CA SER A 32 54.308 8.515 33.056 1.00 13.74 C </line>
<line>ATOM 238 CA LEU A 33 51.512 9.467 35.536 1.00 14.45 C </line>
<line>ATOM 257 CA ASN A 34 52.740 8.555 38.990 1.00 13.57 C </line>
<line>ATOM 271 CA SER A 37 51.172 8.329 42.484 1.00 15.30 C </line>
<line>ATOM 282 CA GLY A 38 54.011 6.459 44.243 1.00 14.30 C </line>
<line>ATOM 289 CA TYR A 39 54.176 3.993 41.298 1.00 14.37 C </line>
<line>ATOM 310 CA HIS A 40 53.431 4.204 37.522 1.00 15.61 C </line>
<line>ATOM 327 CA PHE A 41 49.659 3.769 36.854 1.00 15.92 C </line>
<line>ATOM 347 CA CYS A 42 49.091 5.381 33.366 1.00 14.42 C </line>
<line>ATOM 357 CA GLY A 43 50.796 6.926 30.317 1.00 12.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS PHE HIS TYR GLY SER ASN LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 4.73 6.09 7.65 6.27 9.40 11.38 9.94 6.14 3.86 </line>
<line>LEU CA 5.85 5.22 6.13 5.94 8.38 9.54 7.05 3.78 </line>
<line>ASN CA 9.04 7.42 6.08 4.64 5.31 5.80 3.84 </line>
<line>SER CA 12.25 9.81 7.40 6.84 5.41 3.83 </line>
<line>GLY CA 14.30 11.99 8.99 7.11 3.84 </line>
<line>TYR CA 11.86 9.52 6.34 3.85 </line>
<line>HIS CA 8.14 6.12 3.86 </line>
<line>PHE CA 7.35 3.88 </line>
<line>CYS CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 1033</line>
<line>LEU CA 891</line>
<line>ASN CA 691</line>
<line>SER CA 455</line>
<line>GLY CA 374</line>
<line>TYR CA 506</line>
<line>HIS CA 716</line>
<line>PHE CA 697</line>
<line>CYS CA 921</line>
<line>GLY CA 1095</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BSQA</entryIDChain>
<sequence>ALLSGNQLHCG</sequence>
<secondary-structure>EEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 121 CA ALA A 32 -47.986 15.488 36.442 1.00 30.37 C </line>
<line>ATOM 126 CA LEU A 33 -48.155 11.711 36.410 1.00 30.45 C </line>
<line>ATOM 134 CA LEU A 34 -48.578 10.302 39.906 1.00 30.53 C </line>
<line>ATOM 142 CA SER A 35 -48.389 6.814 41.382 1.00 30.63 C </line>
<line>ATOM 148 CA GLY A 36 -49.716 6.179 44.881 1.00 31.71 C </line>
<line>ATOM 152 CA ASN A 37 -49.630 9.869 45.501 1.00 31.18 C </line>
<line>ATOM 160 CA GLN A 38 -45.956 10.207 44.752 1.00 30.87 C </line>
<line>ATOM 169 CA LEU A 39 -44.786 12.269 41.791 1.00 30.81 C </line>
<line>ATOM 177 CA HIS A 40 -43.486 9.860 39.171 1.00 30.94 C </line>
<line>ATOM 187 CA CYS A 41 -43.114 11.820 35.891 1.00 31.09 C </line>
<line>ATOM 193 CA GLY A 42 -43.975 15.102 34.188 1.00 30.12 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS HIS LEU GLN ASN GLY SER LEU LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.62 6.12 7.71 7.02 10.05 10.79 12.68 9.99 6.26 3.78 </line>
<line>LEU CA 5.82 5.07 5.73 6.37 8.76 9.39 10.24 6.98 3.79 </line>
<line>LEU CA 8.77 6.95 5.16 4.67 5.51 5.71 6.56 3.79 </line>
<line>SER CA 11.83 9.11 6.18 6.55 5.37 5.28 3.80 </line>
<line>GLY CA 15.06 12.50 9.22 8.42 5.51 3.74 </line>
<line>ASN CA 13.69 11.77 8.82 6.56 3.76 </line>
<line>GLN CA 11.81 9.44 6.11 3.79 </line>
<line>LEU CA 8.15 6.15 3.79 </line>
<line>HIS CA 7.25 3.84 </line>
<line>CYS CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 527</line>
<line>LEU CA 483</line>
<line>LEU CA 375</line>
<line>SER CA 249</line>
<line>GLY CA 176</line>
<line>ASN CA 215</line>
<line>GLN CA 244</line>
<line>LEU CA 357</line>
<line>HIS CA 353</line>
<line>CYS CA 464</line>
<line>GLY CA 543</line>
</n14>
</entryChain>
<parallel>
<x>99.75800323486328</x>
<y>-3.691999912261963</y>
<z>-1.843999981880188</z>
</parallel>
<rotation>
<x>-0.4690000116825104</x>
<y>-0.8399999737739563</y>
<z>-0.2720000147819519</z>
<x>0.6650000214576721</x>
<y>-0.1340000033378601</y>
<z>-0.734000027179718</z>
<x>0.5799999833106995</x>
<y>-0.5260000228881836</y>
<z>0.621999979019165</z>
</rotation>
<rmsd>0.6712790131568909</rmsd>
<dmax>1.2468760013580322</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1C5Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5QA</entryIDChain>
<sequence>VSWGS-GCAQK</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2833 CA VAL A 213 45.099 3.625 24.834 1.00 12.72 C </line>
<line>ATOM 2849 CA SER A 214 41.581 2.984 26.159 1.00 14.64 C </line>
<line>ATOM 2860 CA TRP A 215 40.427 -0.676 26.432 1.00 14.24 C </line>
<line>ATOM 2884 CA GLY A 216 40.296 -4.183 25.064 1.00 18.26 C </line>
<line>ATOM 2891 CA SER A 217 39.236 -7.750 26.048 1.00 20.91 C </line>
<line>ATOM 2907 CA GLY A 219 42.306 -9.135 27.776 1.00 23.22 C </line>
<line>ATOM 2914 CA CYS A 220 45.591 -8.417 26.013 1.00 19.84 C </line>
<line>ATOM 2924 CA ALA A 221A 46.857 -9.786 22.705 1.00 20.81 C </line>
<line>ATOM 2934 CA GLN A 221 44.027 -12.303 22.331 1.00 21.64 C </line>
<line>ATOM 2951 CA LYS A 222 43.032 -13.519 18.862 1.00 26.55 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLN ALA CYS GLY SER GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 18.27 16.16 13.69 12.11 13.39 12.85 9.17 6.55 3.81 </line>
<line>SER CA 18.10 15.95 14.24 12.09 12.25 10.99 7.36 3.85 </line>
<line>TRP CA 15.13 12.84 11.76 9.31 8.77 7.18 3.77 </line>
<line>GLY CA 11.54 9.34 8.94 6.85 5.99 3.85 </line>
<line>SER CA 9.97 7.58 8.57 6.39 3.79 </line>
<line>GLY CA 9.96 6.53 6.84 3.80 </line>
<line>CYS CA 9.15 5.58 3.80 </line>
<line>ALA CA 6.58 3.81 </line>
<line>GLN CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 1072</line>
<line>SER CA 956</line>
<line>TRP CA 834</line>
<line>GLY CA 782</line>
<line>SER CA 569</line>
<line>GLY CA 537</line>
<line>CYS CA 670</line>
<line>ALA CA 637</line>
<line>GLN CA 498</line>
<line>LYS CA 427</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BSQA</entryIDChain>
<sequence>VSWGTFPCGQP</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1406 CA VAL A 205 -36.763 15.445 29.274 1.00 29.61 C </line>
<line>ATOM 1413 CA SER A 206 -35.298 11.984 28.822 1.00 29.90 C </line>
<line>ATOM 1419 CA TRP A 207 -32.003 11.593 30.655 1.00 29.52 C </line>
<line>ATOM 1433 CA GLY A 208 -29.017 13.440 32.048 1.00 29.79 C </line>
<line>ATOM 1437 CA THR A 209 -26.284 12.930 34.599 1.00 29.72 C </line>
<line>ATOM 1444 CA PHE A 210 -26.361 11.707 38.124 1.00 30.28 C </line>
<line>ATOM 1455 CA PRO A 211 -25.933 13.790 40.194 1.00 30.86 C </line>
<line>ATOM 1462 CA CYS A 212 -28.096 16.117 38.128 1.00 31.34 C </line>
<line>ATOM 1468 CA GLY A 213 -26.596 19.080 36.610 1.00 32.50 C </line>
<line>ATOM 1472 CA GLN A 214 -23.116 20.318 36.497 1.00 33.82 C </line>
<line>ATOM 1481 CA PRO A 215 -21.432 22.185 34.246 1.00 32.80 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLN GLY CYS PRO PHE THR GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 17.47 16.19 13.05 12.41 15.47 14.16 12.02 8.47 6.28 3.79 </line>
<line>SER CA 18.05 16.64 13.66 12.47 14.84 12.90 10.75 7.21 3.79 </line>
<line>TRP CA 15.39 13.76 10.99 9.57 11.52 9.36 7.07 3.78 </line>
<line>GLY CA 11.78 10.10 7.65 6.71 8.72 6.85 3.77 </line>
<line>THR CA 10.46 8.26 6.48 5.09 5.67 3.73 </line>
<line>PHE CA 12.21 9.34 7.53 4.74 2.97 </line>
<line>PRO CA 11.23 8.01 6.42 3.79 </line>
<line>CYS CA 9.81 6.72 3.65 </line>
<line>GLY CA 6.47 3.70 </line>
<line>GLN CA 3.37 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>VAL CA 555</line>
<line>SER CA 498</line>
<line>TRP CA 447</line>
<line>GLY CA 418</line>
<line>THR CA 322</line>
<line>PHE CA 251</line>
<line>PRO CA 237</line>
<line>CYS CA 335</line>
<line>GLY CA 351</line>
<line>GLN CA 264</line>
<line>PRO CA 239</line>
</n14>
</entryChain>
<parallel>
<x>72.44499969482422</x>
<y>-19.899999618530273</y>
<z>-8.842000007629395</z>
</parallel>
<rotation>
<x>-0.5699999928474426</x>
<y>-0.7459999918937683</y>
<z>-0.34299999475479126</z>
<x>0.6779999732971191</x>
<y>-0.19200000166893005</y>
<z>-0.7099999785423279</z>
<x>0.46399998664855957</x>
<y>-0.6370000243186951</y>
<z>0.6150000095367432</z>
</rotation>
<rmsd>1.487123966217041</rmsd>
<dmax>2.826080083847046</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BSQA</entryIDChain>
<sequence>GDRRA--QRIKA</sequence>
<secondary-structure> --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 424 CA GLY A 72 -51.841 19.691 44.885 1.00 33.32 C </line>
<line>ATOM 428 CA ASP A 73 -55.053 21.611 45.605 1.00 33.52 C </line>
<line>ATOM 436 CA ARG A 74 -58.493 21.385 45.041 1.00 34.55 C </line>
<line>ATOM 441 CA ARG A 75 -59.740 22.427 42.233 1.00 35.41 C </line>
<line>ATOM 446 CA ALA A 76 -57.976 20.423 40.659 1.00 32.68 C </line>
<line>ATOM 451 CA GLN A 77 -58.075 18.158 38.483 1.00 31.79 C </line>
<line>ATOM 460 CA ARG A 78 -57.146 14.517 38.987 1.00 31.55 C </line>
<line>ATOM 471 CA ILE A 79 -57.860 12.164 36.063 1.00 31.16 C </line>
<line>ATOM 479 CA LYS A 80 -57.215 8.406 35.874 1.00 31.99 C </line>
<line>ATOM 488 CA ALA A 81 -55.354 6.922 32.897 1.00 32.04 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS ILE ARG GLN ALA ARG ARG ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 17.86 15.41 13.07 9.47 9.07 7.49 8.77 6.87 3.81 </line>
<line>ASP CA 19.43 16.55 13.72 9.92 8.47 5.87 5.83 3.49 </line>
<line>ARG CA 19.14 15.94 12.89 9.25 7.32 4.52 3.24 </line>
<line>ARG CA 18.62 15.60 12.12 8.93 5.92 3.10 </line>
<line>ALA CA 15.79 12.96 9.45 6.19 3.14 </line>
<line>GLN CA 12.84 10.13 6.47 3.79 </line>
<line>ARG CA 9.90 6.86 3.82 </line>
<line>ILE CA 6.62 3.82 </line>
<line>LYS CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 257</line>
<line>ASP CA 177</line>
<line>ARG CA 144</line>
<line>ARG CA 167</line>
<line>ALA CA 249</line>
<line>GLN CA 297</line>
<line>ARG CA 328</line>
<line>ILE CA 340</line>
<line>LYS CA 305</line>
<line>ALA CA 361</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1C5Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5QA</entryIDChain>
<sequence>NVVEGNEQFISA</sequence>
<secondary-structure> EEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 822 CA ASN A 74 62.669 2.958 38.610 1.00 20.58 C </line>
<line>ATOM 836 CA VAL A 75 66.086 4.683 38.161 1.00 19.35 C </line>
<line>ATOM 852 CA VAL A 76 66.834 8.465 37.970 1.00 19.72 C </line>
<line>ATOM 868 CA GLU A 77 69.174 8.395 34.901 1.00 19.87 C </line>
<line>ATOM 883 CA GLY A 78 69.063 12.125 34.125 1.00 18.41 C </line>
<line>ATOM 890 CA ASN A 79 66.645 14.003 31.761 1.00 21.17 C </line>
<line>ATOM 904 CA GLU A 80 63.695 13.485 34.079 1.00 16.45 C </line>
<line>ATOM 919 CA GLN A 81 61.417 16.359 35.045 1.00 15.08 C </line>
<line>ATOM 936 CA PHE A 82 58.840 15.596 37.809 1.00 16.27 C </line>
<line>ATOM 956 CA ILE A 83 56.007 18.154 37.798 1.00 14.55 C </line>
<line>ATOM 975 CA SER A 84 52.780 18.035 39.780 1.00 20.43 C </line>
<line>ATOM 986 CA ALA A 85 49.454 18.364 37.967 1.00 17.90 C </line>
</atom-coordinate>
<distance-map>
<line> ALA SER ILE PHE GLN GLU ASN GLY GLU VAL VAL ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 20.31 18.07 16.61 13.23 13.92 11.51 13.59 12.04 9.25 6.93 3.85 </line>
<line>VAL CA 21.54 18.92 16.83 13.10 12.96 9.99 11.32 8.97 5.83 3.86 </line>
<line>VAL CA 20.00 17.10 14.53 10.71 10.01 7.08 8.32 5.76 3.86 </line>
<line>GLU CA 22.31 19.63 16.64 12.93 11.12 7.52 6.91 3.81 </line>
<line>GLY CA 20.93 18.22 14.84 11.41 8.79 5.54 3.87 </line>
<line>ASN CA 18.79 16.52 12.92 10.00 6.61 3.79 </line>
<line>GLU CA 15.55 13.13 9.73 6.48 3.79 </line>
<line>GLN CA 12.48 9.99 6.33 3.86 </line>
<line>PHE CA 9.79 6.82 3.82 </line>
<line>ILE CA 6.56 3.79 </line>
<line>SER CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ASN CA 453</line>
<line>VAL CA 369</line>
<line>VAL CA 367</line>
<line>GLU CA 351</line>
<line>GLY CA 374</line>
<line>ASN CA 505</line>
<line>GLU CA 629</line>
<line>GLN CA 660</line>
<line>PHE CA 662</line>
<line>ILE CA 628</line>
<line>SER CA 594</line>
<line>ALA CA 718</line>
</n14>
</entryChain>
<parallel>
<x>-120.78399658203125</x>
<y>7.954999923706055</y>
<z>4.691999912261963</z>
</parallel>
<rotation>
<x>-0.6769999861717224</x>
<y>0.6240000128746033</y>
<z>0.38999998569488525</z>
<x>-0.7149999737739563</x>
<y>-0.4320000112056732</y>
<z>-0.550000011920929</z>
<x>-0.17499999701976776</x>
<y>-0.6510000228881836</y>
<z>0.7379999756813049</z>
</rotation>
<rmsd>2.5501511096954346</rmsd>
<dmax>4.2216291427612305</dmax>
</indel>