NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1C5RA-3BSQC
confEVID 1C5RA-3BSQC
pdbIDA 1C5R
pdbIDB 3BSQ
pdbChainA A
pdbChainB C
identity 0.435600012540817
indelSize 3
alignment <alignment>
<seq1>IVGGYTCGANTVPYQVSLNSG-YHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN</seq1>
<seq2>IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGD--RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKHH</seq2>
<ss_1> EEEEEE - EEEEEEEEEEEEE GGG EEEEE EEEE EEEEE EEEEE EEEEEEE EEEEEEE HHHHHHH EEEEE EEE EEEEE EEEEEEEE - EEEEEEEEHHHHHHHHHHH </ss_1>
<ss_2> EEEEEEE EEEEEEEEEEEEE GGG EEEEE EE -- EEEEEEEEEEE EEEE EEEEEEE EEEEEEEEE HHHH EEEEEE EEE EEEEE EEEEEEEE EEEEE HHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1C5R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5RA</entryIDChain>
<sequence>SLNSG-YHFCG</sequence>
<secondary-structure>EEE - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 227 CA SER A 32 46.023 17.244 36.317 1.00 8.55 C </line>
<line>ATOM 238 CA LEU A 33 43.891 20.460 35.803 1.00 6.52 C </line>
<line>ATOM 257 CA ASN A 34 46.071 23.065 34.124 1.00 9.28 C </line>
<line>ATOM 271 CA SER A 37 45.390 26.748 33.558 1.00 12.16 C </line>
<line>ATOM 282 CA GLY A 38 48.897 27.426 32.214 1.00 11.53 C </line>
<line>ATOM 289 CA TYR A 39 50.384 25.385 35.134 1.00 10.74 C </line>
<line>ATOM 310 CA HIS A 40 49.154 22.465 37.242 1.00 9.77 C </line>
<line>ATOM 328 CA PHE A 41 46.866 23.708 40.037 1.00 9.60 C </line>
<line>ATOM 348 CA CYS A 42 44.643 20.675 41.045 1.00 10.44 C </line>
<line>ATOM 358 CA GLY A 43 44.219 16.950 40.517 1.00 7.97 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS PHE HIS TYR GLY SER ASN LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 4.58 6.00 7.51 6.16 9.31 11.35 9.92 6.22 3.89 </line>
<line>LEU CA 5.89 5.30 6.11 5.81 8.18 9.30 6.84 3.79 </line>
<line>ASN CA 9.04 7.46 6.00 4.43 5.00 5.54 3.79 </line>
<line>SER CA 12.07 9.67 7.31 6.79 5.41 3.82 </line>
<line>GLY CA 14.16 11.90 8.90 7.07 3.86 </line>
<line>TYR CA 11.75 9.49 6.26 3.81 </line>
<line>HIS CA 8.09 6.17 3.82 </line>
<line>PHE CA 7.27 3.89 </line>
<line>CYS CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 1041</line>
<line>LEU CA 900</line>
<line>ASN CA 693</line>
<line>SER CA 475</line>
<line>GLY CA 366</line>
<line>TYR CA 492</line>
<line>HIS CA 713</line>
<line>PHE CA 694</line>
<line>CYS CA 927</line>
<line>GLY CA 1104</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3BSQC</entryIDChain>
<sequence>ALLSGNQLHCG</sequence>
<secondary-structure>EEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 3466 CA ALA C 32 -34.168 -19.185 -0.387 1.00 30.47 C </line>
<line>ATOM 3471 CA LEU C 33 -36.711 -16.436 -0.806 1.00 30.49 C </line>
<line>ATOM 3479 CA LEU C 34 -37.475 -15.752 -4.443 1.00 30.55 C </line>
<line>ATOM 3487 CA SER C 35 -39.475 -13.052 -6.220 1.00 30.66 C </line>
<line>ATOM 3493 CA GLY C 36 -40.500 -13.587 -9.835 1.00 31.70 C </line>
<line>ATOM 3497 CA ASN C 37 -37.934 -16.326 -10.041 1.00 31.21 C </line>
<line>ATOM 3505 CA GLN C 38 -35.031 -14.157 -9.089 1.00 30.90 C </line>
<line>ATOM 3514 CA LEU C 39 -33.126 -14.840 -5.848 1.00 30.95 C </line>
<line>ATOM 3522 CA HIS C 40 -34.117 -12.122 -3.359 1.00 31.05 C </line>
<line>ATOM 3532 CA CYS C 41 -32.927 -13.241 0.084 1.00 31.08 C </line>
<line>ATOM 3538 CA GLY C 42 -31.661 -16.216 2.078 1.00 30.10 C </line>
</atom-coordinate>
<distance-map>
<line> GLY CYS HIS LEU GLN ASN GLY SER LEU LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.60 6.09 7.66 7.06 10.09 10.75 12.68 9.99 6.26 3.77 </line>
<line>LEU CA 5.82 5.03 5.64 6.39 8.75 9.32 10.20 6.96 3.78 </line>
<line>LEU CA 8.75 6.89 5.06 4.66 5.49 5.65 6.55 3.80 </line>
<line>SER CA 11.83 9.09 6.14 6.61 5.40 5.26 3.80 </line>
<line>GLY CA 15.07 12.48 9.21 8.48 5.55 3.76 </line>
<line>ASN CA 13.65 11.71 8.77 6.55 3.75 </line>
<line>GLN CA 11.84 9.46 6.15 3.82 </line>
<line>LEU CA 8.18 6.15 3.82 </line>
<line>HIS CA 7.24 3.81 </line>
<line>CYS CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 525</line>
<line>LEU CA 479</line>
<line>LEU CA 375</line>
<line>SER CA 248</line>
<line>GLY CA 177</line>
<line>ASN CA 219</line>
<line>GLN CA 241</line>
<line>LEU CA 355</line>
<line>HIS CA 355</line>
<line>CYS CA 463</line>
<line>GLY CA 546</line>
</n14>
</entryChain>
<parallel>
<x>83.41000366210938</x>
<y>38.20399856567383</y>
<z>40.551998138427734</z>
</parallel>
<rotation>
<x>0.5709999799728394</x>
<y>-0.3919999897480011</y>
<z>0.7210000157356262</z>
<x>-0.20100000500679016</x>
<y>0.7850000262260437</y>
<z>0.5860000252723694</z>
<x>-0.7960000038146973</x>
<y>-0.47999998927116394</y>
<z>0.36899998784065247</z>
</rotation>
<rmsd>0.6973230242729187</rmsd>
<dmax>1.2646559476852417</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1C5R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5RA</entryIDChain>
<sequence>VSWGS-GCAQK</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 2752 CA VAL A 213 41.414 15.815 48.516 1.00 7.26 C </line>
<line>ATOM 2768 CA SER A 214 39.714 18.795 50.202 1.00 7.63 C </line>
<line>ATOM 2779 CA TRP A 215 41.495 20.366 53.157 1.00 10.08 C </line>
<line>ATOM 2803 CA GLY A 216 43.585 19.958 56.314 1.00 18.29 C </line>
<line>ATOM 2810 CA SER A 217 45.505 22.022 58.944 1.00 22.26 C </line>
<line>ATOM 2821 CA GLY A 219 48.942 22.297 57.317 1.00 20.14 C </line>
<line>ATOM 2828 CA CYS A 220 50.288 18.977 56.019 1.00 19.79 C </line>
<line>ATOM 2838 CA ALA A 221A 51.398 15.868 57.903 1.00 18.66 C </line>
<line>ATOM 2848 CA GLN A 221 51.022 17.585 61.235 1.00 21.48 C </line>
<line>ATOM 2865 CA LYS A 222 50.352 15.474 64.292 1.00 23.74 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLN ALA CYS GLY SER GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 18.14 16.04 13.70 12.04 13.27 12.81 9.09 6.50 3.82 </line>
<line>SER CA 17.96 15.84 14.30 12.07 12.17 10.97 7.33 3.79 </line>
<line>TRP CA 15.05 12.80 11.87 9.35 8.75 7.23 3.81 </line>
<line>GLY CA 11.38 9.23 8.96 6.78 5.93 3.86 </line>
<line>SER CA 9.75 7.44 8.58 6.38 3.81 </line>
<line>GLY CA 9.86 6.47 6.91 3.81 </line>
<line>CYS CA 8.98 5.45 3.80 </line>
<line>ALA CA 6.49 3.77 </line>
<line>GLN CA 3.77 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 1093</line>
<line>SER CA 971</line>
<line>TRP CA 847</line>
<line>GLY CA 796</line>
<line>SER CA 586</line>
<line>GLY CA 553</line>
<line>CYS CA 688</line>
<line>ALA CA 642</line>
<line>GLN CA 510</line>
<line>LYS CA 441</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3BSQC</entryIDChain>
<sequence>VSWGTFPCGQP</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 4767 CA VAL C 205 -26.641 -11.595 7.452 1.00 29.72 C </line>
<line>ATOM 4774 CA SER C 206 -27.806 -8.007 7.670 1.00 29.85 C </line>
<line>ATOM 4780 CA TRP C 207 -25.373 -5.603 6.044 1.00 29.49 C </line>
<line>ATOM 4794 CA GLY C 208 -21.760 -5.038 5.091 1.00 29.89 C </line>
<line>ATOM 4798 CA THR C 209 -19.695 -3.019 2.671 1.00 29.71 C </line>
<line>ATOM 4805 CA PHE C 210 -20.092 -2.283 -0.987 1.00 30.22 C </line>
<line>ATOM 4816 CA PRO C 211 -18.228 -3.651 -2.751 1.00 30.84 C </line>
<line>ATOM 4823 CA CYS C 212 -19.291 -6.498 -0.736 1.00 31.43 C </line>
<line>ATOM 4829 CA GLY C 213 -16.463 -6.693 -0.089 1.00 32.32 C </line>
<line>ATOM 4833 CA GLN C 214 -13.146 -6.869 1.628 1.00 33.82 C </line>
<line>ATOM 4842 CA PRO C 215 -10.751 -6.623 3.908 1.00 32.90 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLN GLY CYS PRO PHE THR GLY TRP SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 17.02 15.44 13.58 12.13 15.43 14.17 12.03 8.51 6.28 3.78 </line>
<line>SER CA 17.52 15.90 13.81 12.06 14.81 12.93 10.75 7.21 3.79 </line>
<line>TRP CA 14.81 13.06 10.87 9.15 11.50 9.40 7.09 3.78 </line>
<line>GLY CA 11.19 9.46 7.59 6.49 8.71 6.88 3.77 </line>
<line>THR CA 9.72 7.67 5.62 4.89 5.65 3.75 </line>
<line>PHE CA 11.40 8.72 5.78 4.30 2.91 </line>
<line>PRO CA 10.44 7.44 4.41 3.65 </line>
<line>CYS CA 9.72 6.59 2.91 </line>
<line>GLY CA 6.97 3.74 </line>
<line>GLN CA 3.32 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>VAL CA 557</line>
<line>SER CA 502</line>
<line>TRP CA 448</line>
<line>GLY CA 420</line>
<line>THR CA 319</line>
<line>PHE CA 251</line>
<line>PRO CA 235</line>
<line>CYS CA 332</line>
<line>GLY CA 323</line>
<line>GLN CA 289</line>
<line>PRO CA 251</line>
</n14>
</entryChain>
<parallel>
<x>67.23100280761719</x>
<y>25.386999130249023</y>
<z>52.70500183105469</z>
</parallel>
<rotation>
<x>0.33500000834465027</x>
<y>-0.460999995470047</y>
<z>0.8220000267028809</z>
<x>-0.2460000067949295</x>
<y>0.7990000247955322</y>
<z>0.5490000247955322</z>
<x>-0.9100000262260437</x>
<y>-0.38499999046325684</y>
<z>0.15399999916553497</z>
</rotation>
<rmsd>1.5587090253829956</rmsd>
<dmax>2.782839059829712</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3BSQ</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>3BSQC</entryIDChain>
<sequence>DTLGD--RRAQR</sequence>
<secondary-structure>EE -- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 3746 CA ASP C 69 -28.210 -26.813 -2.640 1.00 31.20 C </line>
<line>ATOM 3754 CA THR C 70 -29.019 -25.882 -6.226 1.00 31.37 C </line>
<line>ATOM 3761 CA LEU C 71 -31.448 -23.318 -7.550 1.00 31.75 C </line>
<line>ATOM 3769 CA GLY C 72 -33.150 -25.080 -8.710 1.00 33.59 C </line>
<line>ATOM 3773 CA ASP C 73 -33.867 -28.553 -9.456 1.00 33.69 C </line>
<line>ATOM 3781 CA ARG C 74 -37.131 -29.643 -10.615 1.00 36.10 C </line>
<line>ATOM 3792 CA ARG C 75 -37.626 -31.313 -7.230 1.00 35.61 C </line>
<line>ATOM 3803 CA ALA C 76 -38.083 -29.524 -4.849 1.00 32.89 C </line>
<line>ATOM 3808 CA GLN C 77 -39.854 -27.878 -2.920 1.00 31.81 C </line>
<line>ATOM 3817 CA ARG C 78 -41.383 -24.511 -3.677 1.00 31.48 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLN ALA ARG ARG ASP GLY LEU THR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.41 11.70 10.47 11.40 12.30 9.03 8.02 6.84 3.79 </line>
<line>THR CA 12.70 11.50 9.86 10.23 9.96 6.41 4.89 3.77 </line>
<line>LEU CA 10.73 10.63 9.48 10.11 9.04 6.07 2.71 </line>
<line>GLY CA 9.67 9.29 7.68 7.82 6.35 3.62 </line>
<line>ASP CA 10.31 8.89 6.32 5.17 3.63 </line>
<line>ARG CA 9.62 8.35 5.85 3.81 </line>
<line>ARG CA 8.54 5.94 3.01 </line>
<line>ALA CA 6.12 3.09 </line>
<line>GLN CA 3.77 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>ASP CA 354</line>
<line>THR CA 326</line>
<line>LEU CA 324</line>
<line>GLY CA 269</line>
<line>ASP CA 191</line>
<line>ARG CA 141</line>
<line>ARG CA 184</line>
<line>ALA CA 259</line>
<line>GLN CA 308</line>
<line>ARG CA 338</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1C5R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C5RA</entryIDChain>
<sequence>DNINVVEGNEQF</sequence>
<secondary-structure> EE</secondary-structure>
<atom-coordinate>
<line>ATOM 767 CA ASP A 71 53.387 11.157 35.036 1.00 16.09 C </line>
<line>ATOM 779 CA ASN A 72 56.066 13.955 34.749 1.00 13.12 C </line>
<line>ATOM 793 CA ILE A 73 53.956 17.152 34.282 1.00 14.70 C </line>
<line>ATOM 812 CA ASN A 74 56.824 19.210 32.944 1.00 13.23 C </line>
<line>ATOM 826 CA VAL A 75 57.828 16.729 30.237 1.00 16.16 C </line>
<line>ATOM 842 CA VAL A 76 55.788 15.394 27.292 1.00 17.25 C </line>
<line>ATOM 858 CA GLU A 77 56.659 11.708 27.503 1.00 25.03 C </line>
<line>ATOM 873 CA GLY A 78 54.215 10.442 24.848 1.00 26.84 C </line>
<line>ATOM 880 CA ASN A 79 51.112 9.123 26.768 1.00 29.40 C </line>
<line>ATOM 894 CA GLU A 80 49.242 12.355 27.314 1.00 18.68 C </line>
<line>ATOM 909 CA GLN A 81 45.899 13.658 26.126 1.00 15.16 C </line>
<line>ATOM 926 CA PHE A 82 45.294 17.485 26.785 1.00 15.53 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLN GLU ASN GLY GLU VAL VAL ASN ILE ASN ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.18 11.90 8.85 8.81 10.25 8.23 9.15 8.59 9.00 6.07 3.88 </line>
<line>ASN CA 13.85 13.33 10.22 10.56 10.67 7.61 7.60 5.58 5.61 3.86 </line>
<line>ILE CA 11.46 11.99 9.68 11.36 11.58 9.10 7.44 5.62 3.78 </line>
<line>ASN CA 13.19 14.02 11.67 13.13 12.22 9.27 6.90 3.81 </line>
<line>VAL CA 13.02 12.99 10.07 10.72 9.03 5.84 3.82 </line>
<line>VAL CA 10.71 10.11 7.22 7.84 5.74 3.79 </line>
<line>GLU CA 12.77 11.02 7.45 6.16 3.82 </line>
<line>GLY CA 11.53 9.01 5.87 3.88 </line>
<line>ASN CA 10.19 6.94 3.77 </line>
<line>GLU CA 6.49 3.78 </line>
<line>GLN CA 3.93 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ASP CA 724</line>
<line>ASN CA 598</line>
<line>ILE CA 671</line>
<line>ASN CA 450</line>
<line>VAL CA 370</line>
<line>VAL CA 372</line>
<line>GLU CA 358</line>
<line>GLY CA 349</line>
<line>ASN CA 513</line>
<line>GLU CA 628</line>
<line>GLN CA 657</line>
<line>PHE CA 668</line>
</n14>
</entryChain>
<parallel>
<x>-87.64600372314453</x>
<y>-41.28099822998047</y>
<z>-37.93199920654297</z>
</parallel>
<rotation>
<x>0.6019999980926514</x>
<y>-0.17599999904632568</y>
<z>-0.7789999842643738</z>
<x>-0.1679999977350235</x>
<y>0.9259999990463257</y>
<z>-0.33899998664855957</z>
<x>0.7799999713897705</x>
<y>0.33500000834465027</y>
<z>0.527999997138977</z>
</rotation>
<rmsd>2.6163299083709717</rmsd>
<dmax>3.8736939430236816</dmax>
</indel>