NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A2AB-2NOTA
confEVID 1A2AB-2NOTA
pdbIDA 1A2A
pdbIDB 2NOT
pdbChainA B
pdbChainB A
identity 0.347099989652634
indelSize 3
alignment <alignment>
<seq1>NLLQFNKMIKEETG-KNAIPFYAFYGCYCGGGGNGKPKDGTDRCCFVHDCCYGRLVNCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDSK-CTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPTRHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHH - HHHHHHHHHHHHHHH EEE-- EEEEE EEE - HHHHHHHHHHHHHHHHHHH GGG - </ss_1>
<ss_2> HHHHHHHHHH HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1A2AB</entryIDChain>
<sequence>NCNTK--SDIYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 1388 CA ASN B 59 22.899 4.158 28.621 1.00 52.45 C </line>
<line>ATOM 1396 CA CYS B 61 26.626 3.898 27.863 1.00 42.20 C </line>
<line>ATOM 1402 CA ASN B 67 28.947 6.430 29.503 1.00 40.54 C </line>
<line>ATOM 1410 CA THR B 68 30.203 7.294 26.023 1.00 37.63 C </line>
<line>ATOM 1417 CA LYS B 69 32.473 10.015 27.383 1.00 38.80 C </line>
<line>ATOM 1426 CA SER B 70 34.522 8.315 30.083 1.00 35.76 C </line>
<line>ATOM 1432 CA ASP B 71 34.261 4.576 29.360 1.00 32.92 C </line>
<line>ATOM 1440 CA ILE B 72 37.697 3.293 28.402 1.00 25.11 C </line>
<line>ATOM 1448 CA TYR B 73 37.452 0.768 25.605 1.00 15.81 C </line>
<line>ATOM 1460 CA SER B 74 40.057 -1.247 23.717 1.00 11.63 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ILE ASP SER LYS THR ASN CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 18.65 15.24 14.82 11.39 12.43 11.29 8.36 6.52 3.81 </line>
<line>CYS CA 14.97 11.49 11.10 7.81 9.32 8.48 5.26 3.81 </line>
<line>ASN CA 14.69 10.94 9.36 5.63 5.91 5.46 3.80 </line>
<line>THR CA 13.24 9.76 8.82 5.92 6.01 3.80 </line>
<line>LYS CA 14.06 10.65 8.57 6.06 3.79 </line>
<line>SER CA 12.75 9.25 6.17 3.82 </line>
<line>ASP CA 9.97 6.23 3.79 </line>
<line>ILE CA 6.94 3.78 </line>
<line>TYR CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 161</line>
<line>CYS CA 231</line>
<line>ASN CA 237</line>
<line>THR CA 305</line>
<line>LYS CA 277</line>
<line>SER CA 227</line>
<line>ASP CA 266</line>
<line>ILE CA 271</line>
<line>TYR CA 304</line>
<line>SER CA 277</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>34.37300109863281</x>
<y>-9.503999710083008</y>
<z>-7.631999969482422</z>
</parallel>
<rotation>
<x>0.07500000298023224</x>
<y>-0.5139999985694885</y>
<z>-0.8550000190734863</z>
<x>-0.6029999852180481</x>
<y>-0.7059999704360962</y>
<z>0.3720000088214874</z>
<x>-0.7940000295639038</x>
<y>0.4869999885559082</y>
<z>-0.3630000054836273</z>
</rotation>
<rmsd>2.7826778888702393</rmsd>
<dmax>3.4069790840148926</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1A2AB</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1514 CA TYR B 81 44.280 1.022 10.725 1.00 5.51 C </line>
<line>ATOM 1526 CA ILE B 82 42.283 1.184 13.966 1.00 9.61 C </line>
<line>ATOM 1534 CA THR B 83 40.571 -2.034 15.090 1.00 4.75 C </line>
<line>ATOM 1541 CA CYS B 84 38.260 -2.014 18.067 1.00 9.25 C </line>
<line>ATOM 1547 CA GLY B 85 38.601 -4.938 20.411 1.00 13.95 C </line>
<line>ATOM 1551 CA LYS B 86 36.315 -6.957 22.668 1.00 25.27 C </line>
<line>ATOM 1560 CA GLY B 88 34.859 -5.557 25.858 1.00 25.74 C </line>
<line>ATOM 1564 CA THR B 89 31.451 -4.446 27.031 1.00 28.39 C </line>
<line>ATOM 1571 CA ASN B 90 28.816 -3.887 24.330 1.00 25.97 C </line>
<line>ATOM 1579 CA CYS B 91 28.987 -0.251 25.411 1.00 26.42 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 21.24 21.17 21.46 19.00 16.42 12.71 9.97 6.49 3.81 </line>
<line>ILE CA 17.60 17.73 17.88 15.56 13.33 9.62 6.57 3.81 </line>
<line>THR CA 15.62 15.07 15.22 12.69 9.99 6.37 3.77 </line>
<line>CYS CA 11.96 11.49 11.52 9.21 7.03 3.76 </line>
<line>GLY CA 11.81 10.59 9.76 6.64 3.79 </line>
<line>LYS CA 10.31 8.27 7.00 3.78 </line>
<line>GLY CA 7.93 6.45 3.77 </line>
<line>THR CA 5.13 3.81 </line>
<line>ASN CA 3.80 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 237</line>
<line>ILE CA 299</line>
<line>THR CA 271</line>
<line>CYS CA 306</line>
<line>GLY CA 221</line>
<line>LYS CA 171</line>
<line>GLY CA 179</line>
<line>THR CA 192</line>
<line>ASN CA 210</line>
<line>CYS CA 256</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>30.58300018310547</x>
<y>-20.606000900268555</y>
<z>-6.51200008392334</z>
</parallel>
<rotation>
<x>0.38999998569488525</x>
<y>-0.335999995470047</y>
<z>-0.8569999933242798</z>
<x>-0.28999999165534973</x>
<y>-0.9279999732971191</y>
<z>0.23199999332427979</z>
<x>-0.8740000128746033</x>
<y>0.15800000727176666</y>
<z>-0.46000000834465027</z>
</rotation>
<rmsd>1.457988977432251</rmsd>
<dmax>2.7341549396514893</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1A2AB</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHHH GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1686 CA CYS B 105 35.618 10.084 8.665 1.00 29.16 C </line>
<line>ATOM 1692 CA PHE B 106 37.710 13.249 9.251 1.00 24.63 C </line>
<line>ATOM 1703 CA ARG B 107 40.538 11.548 7.413 1.00 23.07 C </line>
<line>ATOM 1714 CA ARG B 108 38.129 10.952 4.526 1.00 24.48 C </line>
<line>ATOM 1725 CA ASN B 109 37.158 14.640 4.551 1.00 27.20 C </line>
<line>ATOM 1733 CA LEU B 110 40.525 16.334 4.972 1.00 31.83 C </line>
<line>ATOM 1741 CA ASP B 111 41.113 17.865 1.519 1.00 39.59 C </line>
<line>ATOM 1749 CA THR B 112 37.784 19.580 2.220 1.00 39.08 C </line>
<line>ATOM 1756 CA TYR B 113 38.770 20.879 5.663 1.00 37.53 C </line>
<line>ATOM 1768 CA ASN B 114 37.681 24.507 5.934 1.00 38.14 C </line>
<line>ATOM 1776 CA ASN B 115 40.273 26.203 8.109 1.00 42.85 C </line>
<line>ATOM 1784 CA GLY B 116 37.860 29.132 8.126 1.00 43.87 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.19 16.79 14.82 11.64 11.68 11.91 8.76 6.33 4.92 5.28 3.84 </line>
<line>PHE CA 15.92 13.25 11.74 8.50 9.46 9.63 5.98 4.93 5.27 3.78 </line>
<line>ARG CA 17.80 14.67 13.35 9.66 9.95 8.66 5.37 5.40 3.81 </line>
<line>ARG CA 18.53 15.81 13.64 10.01 8.94 8.11 5.91 3.81 </line>
<line>ASN CA 14.94 12.49 9.98 6.54 5.50 5.94 3.79 </line>
<line>LEU CA 13.45 10.36 8.71 4.92 5.06 3.82 </line>
<line>ASP CA 13.46 10.66 8.68 5.63 3.81 </line>
<line>THR CA 11.23 9.21 6.17 3.81 </line>
<line>TYR CA 8.66 6.05 3.80 </line>
<line>ASN CA 5.12 3.78 </line>
<line>ASN CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 378</line>
<line>PHE CA 424</line>
<line>ARG CA 333</line>
<line>ARG CA 266</line>
<line>ASN CA 294</line>
<line>LEU CA 287</line>
<line>ASP CA 196</line>
<line>THR CA 221</line>
<line>TYR CA 300</line>
<line>ASN CA 275</line>
<line>ASN CA 251</line>
<line>GLY CA 225</line>
</n14>
</entryChain>
<parallel>
<x>-17.594999313354492</x>
<y>-12.194000244140625</y>
<z>31.90999984741211</z>
</parallel>
<rotation>
<x>0.10700000077486038</x>
<y>-0.574999988079071</y>
<z>-0.8109999895095825</z>
<x>0.08399999886751175</x>
<y>-0.8080000281333923</y>
<z>0.5830000042915344</z>
<x>-0.9909999966621399</x>
<y>-0.13099999725818634</y>
<z>-0.03799999877810478</z>
</rotation>
<rmsd>0.8285049796104431</rmsd>
<dmax>1.7524009943008423</dmax>
</indel>