NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A2AD-2NOTA
confEVID 1A2AD-2NOTA
pdbIDA 1A2A
pdbIDB 2NOT
pdbChainA D
pdbChainB A
identity 0.349599987268448
indelSize 2
alignment <alignment>
<seq1>NLLQFNKMIKEETG-KNAIPFYAFYGCYCGGGGNGKPKDGTDRCCFVHDCCYGRLV--NCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDSK-CTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPTRHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGC--SPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHH - HHHHHHHHHHHHHHH -- EEE-- EEEEE EEE - HHHHHHHHHHHHHHHHHHH GGG - </ss_1>
<ss_2> HHHHHHHHHH HHHH HHHHHHHHHHHHHHHHH -- HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1A2AD</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3438 CA TYR D 81 52.462 0.694 24.062 1.00 7.24 C </line>
<line>ATOM 3450 CA ILE D 82 54.239 -0.689 20.973 1.00 8.56 C </line>
<line>ATOM 3458 CA THR D 83 54.443 -4.499 20.704 1.00 9.44 C </line>
<line>ATOM 3465 CA CYS D 84 56.479 -6.057 17.939 1.00 10.67 C </line>
<line>ATOM 3471 CA GLY D 85 54.934 -9.057 16.262 1.00 7.37 C </line>
<line>ATOM 3475 CA LYS D 86 56.139 -12.271 14.664 1.00 18.14 C </line>
<line>ATOM 3484 CA GLY D 88 57.944 -12.350 11.362 1.00 23.63 C </line>
<line>ATOM 3488 CA THR D 89 61.456 -13.036 10.195 1.00 22.25 C </line>
<line>ATOM 3495 CA ASN D 90 64.157 -12.960 12.902 1.00 31.01 C </line>
<line>ATOM 3503 CA CYS D 91 65.460 -9.930 11.030 1.00 31.62 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 21.25 21.16 21.49 19.01 16.43 12.73 9.96 6.49 3.82 </line>
<line>ILE CA 17.61 17.72 17.91 15.56 13.33 9.63 6.56 3.82 </line>
<line>THR CA 15.64 15.06 15.25 12.70 9.99 6.38 3.77 </line>
<line>CYS CA 11.97 11.49 11.55 9.22 7.03 3.77 </line>
<line>GLY CA 11.79 10.56 9.76 6.63 3.79 </line>
<line>LYS CA 10.27 8.24 6.99 3.76 </line>
<line>GLY CA 7.90 6.43 3.76 </line>
<line>THR CA 5.14 3.82 </line>
<line>ASN CA 3.79 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 237</line>
<line>ILE CA 300</line>
<line>THR CA 271</line>
<line>CYS CA 306</line>
<line>GLY CA 222</line>
<line>LYS CA 173</line>
<line>GLY CA 179</line>
<line>THR CA 190</line>
<line>ASN CA 211</line>
<line>CYS CA 257</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>48.266998291015625</x>
<y>-24.797000885009766</y>
<z>-8.718999862670898</z>
</parallel>
<rotation>
<x>-0.4690000116825104</x>
<y>0.052000001072883606</y>
<z>0.8820000290870667</z>
<x>-0.12099999934434891</x>
<y>-0.9929999709129333</y>
<z>-0.004999999888241291</z>
<x>0.875</x>
<y>-0.10899999737739563</y>
<z>0.47200000286102295</z>
</rotation>
<rmsd>1.4552290439605713</rmsd>
<dmax>2.729727029800415</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1A2AD</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHHH GG</secondary-structure>
<atom-coordinate>
<line>ATOM 3610 CA CYS D 105 64.099 5.731 24.586 1.00 22.34 C </line>
<line>ATOM 3616 CA PHE D 106 63.439 9.230 23.207 1.00 21.82 C </line>
<line>ATOM 3627 CA ARG D 107 60.214 9.265 25.185 1.00 21.53 C </line>
<line>ATOM 3638 CA ARG D 108 62.275 8.448 28.285 1.00 31.97 C </line>
<line>ATOM 3649 CA ASN D 109 64.660 11.333 27.507 1.00 26.69 C </line>
<line>ATOM 3657 CA LEU D 110 62.251 14.074 26.516 1.00 29.09 C </line>
<line>ATOM 3665 CA ASP D 111 62.439 16.466 29.484 1.00 38.00 C </line>
<line>ATOM 3673 CA THR D 112 66.143 16.477 28.647 1.00 33.60 C </line>
<line>ATOM 3680 CA TYR D 113 65.674 17.252 24.968 1.00 38.16 C </line>
<line>ATOM 3692 CA ASN D 114 68.146 19.952 23.979 1.00 39.70 C </line>
<line>ATOM 3700 CA ASN D 115 66.420 22.009 21.297 1.00 39.48 C </line>
<line>ATOM 3708 CA GLY D 116 69.793 23.635 20.787 1.00 43.91 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.17 16.77 14.80 11.63 11.67 11.92 8.76 6.34 4.94 5.29 3.82 </line>
<line>PHE CA 15.93 13.26 11.74 8.51 9.46 9.63 5.99 4.94 5.27 3.78 </line>
<line>ARG CA 17.82 14.70 13.36 9.68 9.96 8.68 5.39 5.43 3.81 </line>
<line>ARG CA 18.53 15.81 13.61 10.00 8.92 8.11 5.90 3.82 </line>
<line>ASN CA 14.93 12.48 9.94 6.52 5.47 5.93 3.78 </line>
<line>LEU CA 13.46 10.37 8.70 4.92 5.05 3.82 </line>
<line>ASP CA 13.46 10.66 8.66 5.61 3.80 </line>
<line>THR CA 11.24 9.20 6.15 3.79 </line>
<line>TYR CA 8.67 6.05 3.79 </line>
<line>ASN CA 5.14 3.80 </line>
<line>ASN CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 380</line>
<line>PHE CA 424</line>
<line>ARG CA 333</line>
<line>ARG CA 266</line>
<line>ASN CA 294</line>
<line>LEU CA 288</line>
<line>ASP CA 195</line>
<line>THR CA 221</line>
<line>TYR CA 299</line>
<line>ASN CA 275</line>
<line>ASN CA 252</line>
<line>GLY CA 226</line>
</n14>
</entryChain>
<parallel>
<x>-44.00299835205078</x>
<y>-8.725000381469727</y>
<z>12.142999649047852</z>
</parallel>
<rotation>
<x>-0.03400000184774399</x>
<y>0.20100000500679016</y>
<z>0.9789999723434448</z>
<x>0.34200000762939453</x>
<y>-0.9179999828338623</y>
<z>0.20100000500679016</z>
<x>0.9390000104904175</x>
<y>0.3409999907016754</y>
<z>-0.03799999877810478</z>
</rotation>
<rmsd>0.8252930045127869</rmsd>
<dmax>1.7425010204315186</dmax>
</indel>