NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1C8RA-3CODA
confEVID 1C8RA-3CODA
pdbIDA 1C8R
pdbIDB 3COD
pdbChainA A
pdbChainB A
identity 0.938300013542175
indelSize 2
alignment <alignment>
<seq1>TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLNLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYV----LFFGFS-MRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG</seq1>
<seq2>TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTAPLLLLDLALLVDADQGTILALVGAAGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG</seq2>
<ss_1> HHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEEEE EEEEEE HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHH----HHH - HHHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHHHHHIIIHHHHHHHHH GGG </ss_1>
<ss_2> HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEEEE EEEEEE HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHIIIIHHHGGG HHHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHHHHHIIIHHHHHHHH GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1C8R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C8RA</entryIDChain>
<sequence>YILYV----LFFGF</sequence>
<secondary-structure>HHHHH----HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1093 CA TYR A 147 11.985 52.277 11.432 1.00 19.23 C </line>
<line>ATOM 1105 CA ILE A 148 12.917 48.709 12.461 1.00 16.98 C </line>
<line>ATOM 1113 CA LEU A 149 16.535 49.702 13.131 1.00 25.42 C </line>
<line>ATOM 1121 CA TYR A 150 15.193 52.691 15.071 1.00 22.03 C </line>
<line>ATOM 1133 CA VAL A 151 13.072 50.486 17.194 1.00 21.24 C </line>
<line>ATOM 1140 CA LEU A 152 15.938 47.992 17.815 1.00 23.81 C </line>
<line>ATOM 1148 CA PHE A 153 18.028 50.844 19.197 1.00 34.11 C </line>
<line>ATOM 1159 CA PHE A 154 15.608 53.231 20.853 1.00 38.29 C </line>
<line>ATOM 1170 CA GLY A 155 12.466 51.097 21.210 1.00 46.77 C </line>
<line>ATOM 1174 CA PHE A 156 13.681 48.929 24.075 1.00 47.92 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY PHE PHE LEU VAL TYR LEU ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 13.19 9.86 10.14 9.94 8.64 6.13 4.87 5.50 3.83 </line>
<line>ILE CA 11.64 9.08 9.91 8.72 6.19 5.06 5.28 3.81 </line>
<line>LEU CA 11.34 9.15 8.54 6.35 5.02 5.40 3.81 </line>
<line>TYR CA 9.87 6.90 5.82 5.34 5.49 3.72 </line>
<line>VAL CA 7.08 4.11 5.23 5.36 3.85 </line>
<line>LEU CA 6.72 5.76 6.07 3.80 </line>
<line>PHE CA 6.81 5.92 3.78 </line>
<line>PHE CA 5.71 3.81 </line>
<line>GLY CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>TYR CA 299</line>
<line>ILE CA 394</line>
<line>LEU CA 370</line>
<line>TYR CA 274</line>
<line>VAL CA 323</line>
<line>LEU CA 397</line>
<line>PHE CA 289</line>
<line>PHE CA 209</line>
<line>GLY CA 249</line>
<line>PHE CA 274</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3COD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CODA</entryIDChain>
<sequence>YILYVLFFGFTSKA</sequence>
<secondary-structure>HHHHHIIIIHHHGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1088 CA TYR A 147 47.664 43.831 -1.562 1.00 27.16 C </line>
<line>ATOM 1100 CA ILE A 148 45.073 42.845 1.020 1.00 28.97 C </line>
<line>ATOM 1108 CA LEU A 149 42.563 41.854 -1.667 1.00 29.37 C </line>
<line>ATOM 1116 CA TYR A 150 45.226 39.964 -3.589 1.00 29.49 C </line>
<line>ATOM 1128 CA VAL A 151 46.031 37.950 -0.456 1.00 29.25 C </line>
<line>ATOM 1135 CA LEU A 152 42.344 37.378 0.225 1.00 28.66 C </line>
<line>ATOM 1143 CA PHE A 153 41.667 36.160 -3.302 1.00 29.91 C </line>
<line>ATOM 1154 CA PHE A 154 44.864 34.200 -4.029 1.00 31.48 C </line>
<line>ATOM 1165 CA GLY A 155 46.160 33.272 -0.594 1.00 34.45 C </line>
<line>ATOM 1169 CA PHE A 156 43.078 32.630 1.529 1.00 37.42 C </line>
<line>ATOM 1180 CA THR A 157 40.867 31.075 -1.165 1.00 40.92 C </line>
<line>ATOM 1187 CA SER A 158 43.652 28.529 -1.581 1.00 45.89 C </line>
<line>ATOM 1193 CA LYS A 159 43.803 27.585 2.097 1.00 51.45 C </line>
<line>ATOM 1202 CA ALA A 160 40.004 27.544 2.287 1.00 56.71 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS SER THR PHE GLY PHE PHE LEU VAL TYR LEU ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 18.41 17.09 15.82 14.46 12.49 10.71 10.33 9.89 8.55 6.20 5.00 5.47 3.79 </line>
<line>ILE CA 16.17 15.35 14.62 12.69 10.42 9.77 10.01 8.66 6.16 5.20 5.44 3.81 </line>
<line>LEU CA 15.07 14.81 13.37 10.92 9.78 9.37 8.33 5.99 4.86 5.36 3.79 </line>
<line>TYR CA 14.70 13.70 11.72 10.19 9.20 7.39 5.79 5.22 5.44 3.81 </line>
<line>VAL CA 12.33 10.90 9.78 8.63 6.40 4.68 5.31 5.51 3.79 </line>
<line>LEU CA 10.32 10.08 9.13 6.62 4.98 5.66 5.88 3.79 </line>
<line>PHE CA 10.40 10.36 8.07 5.57 6.15 5.99 3.82 </line>
<line>PHE CA 10.38 9.08 6.29 5.83 6.05 3.79 </line>
<line>GLY CA 8.89 6.72 5.46 5.76 3.80 </line>
<line>PHE CA 5.99 5.13 5.18 3.82 </line>
<line>THR CA 5.01 5.61 3.80 </line>
<line>SER CA 5.41 3.80 </line>
<line>LYS CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 285</line>
<line>ILE CA 387</line>
<line>LEU CA 376</line>
<line>TYR CA 285</line>
<line>VAL CA 341</line>
<line>LEU CA 422</line>
<line>PHE CA 326</line>
<line>PHE CA 245</line>
<line>GLY CA 296</line>
<line>PHE CA 373</line>
<line>THR CA 320</line>
<line>SER CA 250</line>
<line>LYS CA 268</line>
<line>ALA CA 304</line>
</n14>
</entryChain>
<parallel>
<x>-29.360000610351562</x>
<y>13.406999588012695</y>
<z>16.827999114990234</z>
</parallel>
<rotation>
<x>-0.9259999990463257</x>
<y>0.3619999885559082</y>
<z>0.10599999874830246</z>
<x>-0.1679999977350235</x>
<y>-0.14399999380111694</y>
<z>-0.9750000238418579</z>
<x>-0.33799999952316284</x>
<y>-0.9210000038146973</y>
<z>0.19499999284744263</z>
</rotation>
<rmsd>2.524523973464966</rmsd>
<dmax>3.8733580112457275</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1C8R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C8RA</entryIDChain>
<sequence>FFGFS-MRPEV</sequence>
<secondary-structure>HH - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1148 CA PHE A 153 18.028 50.844 19.197 1.00 34.11 C </line>
<line>ATOM 1159 CA PHE A 154 15.608 53.231 20.853 1.00 38.29 C </line>
<line>ATOM 1170 CA GLY A 155 12.466 51.097 21.210 1.00 46.77 C </line>
<line>ATOM 1174 CA PHE A 156 13.681 48.929 24.075 1.00 47.92 C </line>
<line>ATOM 1185 CA SER A 162 16.943 45.843 33.634 1.00 63.80 C </line>
<line>ATOM 1191 CA MET A 163 17.414 42.636 31.587 1.00 57.09 C </line>
<line>ATOM 1199 CA ARG A 164 19.943 39.916 32.448 1.00 50.80 C </line>
<line>ATOM 1210 CA PRO A 165 23.484 40.979 31.518 1.00 44.21 C </line>
<line>ATOM 1217 CA GLU A 166 23.721 37.836 29.360 1.00 36.46 C </line>
<line>ATOM 1226 CA VAL A 167 20.586 38.776 27.522 1.00 34.34 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU PRO ARG MET SER PHE GLY PHE PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 14.88 17.46 16.70 17.28 14.87 15.32 6.81 5.92 3.78 </line>
<line>PHE CA 16.68 19.37 18.05 18.18 15.19 14.82 5.71 3.81 </line>
<line>GLY CA 16.05 19.21 18.17 17.53 14.27 14.21 3.79 </line>
<line>PHE CA 12.75 15.87 14.65 13.80 10.49 10.56 </line>
<line>SER CA 10.03 11.33 8.42 6.75 3.83 </line>
<line>MET CA 6.44 8.23 6.29 3.81 </line>
<line>ARG CA 5.10 5.30 3.81 </line>
<line>PRO CA 5.41 3.82 </line>
<line>GLU CA 3.75 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 289</line>
<line>PHE CA 209</line>
<line>GLY CA 249</line>
<line>PHE CA 274</line>
<line>SER CA 128</line>
<line>MET CA 191</line>
<line>ARG CA 179</line>
<line>PRO CA 168</line>
<line>GLU CA 222</line>
<line>VAL CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3COD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CODA</entryIDChain>
<sequence>TSKAESMRPEV</sequence>
<secondary-structure>HHGGG HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1180 CA THR A 157 40.867 31.075 -1.165 1.00 40.92 C </line>
<line>ATOM 1187 CA SER A 158 43.652 28.529 -1.581 1.00 45.89 C </line>
<line>ATOM 1193 CA LYS A 159 43.803 27.585 2.097 1.00 51.45 C </line>
<line>ATOM 1202 CA ALA A 160 40.004 27.544 2.287 1.00 56.71 C </line>
<line>ATOM 1207 CA GLU A 161 40.409 24.475 0.081 1.00 62.60 C </line>
<line>ATOM 1216 CA SER A 162 41.726 22.499 3.049 1.00 66.24 C </line>
<line>ATOM 1222 CA MET A 163 38.443 23.273 4.775 1.00 67.66 C </line>
<line>ATOM 1230 CA ARG A 164 35.101 21.529 4.286 1.00 67.61 C </line>
<line>ATOM 1241 CA PRO A 165 32.979 22.678 1.317 1.00 64.91 C </line>
<line>ATOM 1248 CA GLU A 166 30.618 24.359 3.787 1.00 60.96 C </line>
<line>ATOM 1257 CA VAL A 167 33.492 26.429 5.166 1.00 55.88 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU PRO ARG MET SER GLU ALA LYS SER THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.77 13.22 11.79 12.41 10.10 9.59 6.73 5.01 5.61 3.80 </line>
<line>SER CA 12.38 14.70 12.51 12.51 9.75 7.84 5.45 5.41 3.80 </line>
<line>LYS CA 10.82 13.68 11.91 10.83 7.38 5.58 5.03 3.80 </line>
<line>ALA CA 7.21 10.02 8.60 8.01 5.18 5.38 3.80 </line>
<line>GLU CA 8.80 10.47 7.74 7.38 5.23 3.80 </line>
<line>SER CA 9.37 11.29 8.92 6.81 3.79 </line>
<line>MET CA 5.88 7.96 6.49 3.80 </line>
<line>ARG CA 5.23 5.32 3.83 </line>
<line>PRO CA 5.40 3.81 </line>
<line>GLU CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 320</line>
<line>SER CA 250</line>
<line>LYS CA 268</line>
<line>ALA CA 304</line>
<line>GLU CA 221</line>
<line>SER CA 183</line>
<line>MET CA 243</line>
<line>ARG CA 202</line>
<line>PRO CA 191</line>
<line>GLU CA 231</line>
<line>VAL CA 324</line>
</n14>
</entryChain>
<parallel>
<x>-22.211000442504883</x>
<y>20.847999572753906</y>
<z>25.30299949645996</z>
</parallel>
<rotation>
<x>-0.7710000276565552</x>
<y>0.6359999775886536</y>
<z>-0.03799999877810478</z>
<x>0.03999999910593033</x>
<y>-0.010999999940395355</y>
<z>-0.9990000128746033</z>
<x>-0.6359999775886536</x>
<y>-0.7710000276565552</y>
<z>-0.017000000923871994</z>
</rotation>
<rmsd>3.738215923309326</rmsd>
<dmax>6.06763219833374</dmax>
</indel>