NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1C8RA-3CODB
confEVID 1C8RA-3CODB
pdbIDA 1C8R
pdbIDB 3COD
pdbChainA A
pdbChainB B
identity 0.938300013542175
indelSize 2
alignment <alignment>
<seq1>TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLNLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYV----LFFGFS-MRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG</seq1>
<seq2>TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTAPLLLLDLALLVDADQGTILALVGAAGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG</seq2>
<ss_1> HHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEEEE EEEEEE HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHH----HHH - HHHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHHHHHIIIHHHHHHHHH GGG </ss_1>
<ss_2> HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEEEE EEEEEE HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHIIIIHHHGGG HHHHHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHHHHHIIIHHHHHHHH GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1C8R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C8RA</entryIDChain>
<sequence>YILYV----LFFGF</sequence>
<secondary-structure>HHHHH----HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1093 CA TYR A 147 11.985 52.277 11.432 1.00 19.23 C </line>
<line>ATOM 1105 CA ILE A 148 12.917 48.709 12.461 1.00 16.98 C </line>
<line>ATOM 1113 CA LEU A 149 16.535 49.702 13.131 1.00 25.42 C </line>
<line>ATOM 1121 CA TYR A 150 15.193 52.691 15.071 1.00 22.03 C </line>
<line>ATOM 1133 CA VAL A 151 13.072 50.486 17.194 1.00 21.24 C </line>
<line>ATOM 1140 CA LEU A 152 15.938 47.992 17.815 1.00 23.81 C </line>
<line>ATOM 1148 CA PHE A 153 18.028 50.844 19.197 1.00 34.11 C </line>
<line>ATOM 1159 CA PHE A 154 15.608 53.231 20.853 1.00 38.29 C </line>
<line>ATOM 1170 CA GLY A 155 12.466 51.097 21.210 1.00 46.77 C </line>
<line>ATOM 1174 CA PHE A 156 13.681 48.929 24.075 1.00 47.92 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY PHE PHE LEU VAL TYR LEU ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 13.19 9.86 10.14 9.94 8.64 6.13 4.87 5.50 3.83 </line>
<line>ILE CA 11.64 9.08 9.91 8.72 6.19 5.06 5.28 3.81 </line>
<line>LEU CA 11.34 9.15 8.54 6.35 5.02 5.40 3.81 </line>
<line>TYR CA 9.87 6.90 5.82 5.34 5.49 3.72 </line>
<line>VAL CA 7.08 4.11 5.23 5.36 3.85 </line>
<line>LEU CA 6.72 5.76 6.07 3.80 </line>
<line>PHE CA 6.81 5.92 3.78 </line>
<line>PHE CA 5.71 3.81 </line>
<line>GLY CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>TYR CA 299</line>
<line>ILE CA 394</line>
<line>LEU CA 370</line>
<line>TYR CA 274</line>
<line>VAL CA 323</line>
<line>LEU CA 397</line>
<line>PHE CA 289</line>
<line>PHE CA 209</line>
<line>GLY CA 249</line>
<line>PHE CA 274</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3COD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3CODB</entryIDChain>
<sequence>YILYVLFFGFTSKA</sequence>
<secondary-structure>HHHHHIIIIHHHGG</secondary-structure>
<atom-coordinate>
<line>ATOM 2840 CA TYR B 147 25.802 59.855 36.083 1.00 31.95 C </line>
<line>ATOM 2852 CA ILE B 148 23.197 60.807 33.503 1.00 33.45 C </line>
<line>ATOM 2860 CA LEU B 149 20.677 61.771 36.194 1.00 34.71 C </line>
<line>ATOM 2868 CA TYR B 150 23.320 63.698 38.106 1.00 35.42 C </line>
<line>ATOM 2880 CA VAL B 151 24.091 65.714 34.968 1.00 35.65 C </line>
<line>ATOM 2887 CA LEU B 152 20.398 66.240 34.289 1.00 37.08 C </line>
<line>ATOM 2895 CA PHE B 153 19.711 67.459 37.816 1.00 39.29 C </line>
<line>ATOM 2906 CA PHE B 154 22.885 69.459 38.533 1.00 42.34 C </line>
<line>ATOM 2917 CA GLY B 155 24.167 70.397 35.094 1.00 45.11 C </line>
<line>ATOM 2921 CA PHE B 156 21.070 70.992 32.975 1.00 48.29 C </line>
<line>ATOM 2932 CA THR B 157 18.841 72.527 35.665 1.00 50.78 C </line>
<line>ATOM 2939 CA SER B 158 21.597 75.107 36.075 1.00 51.55 C </line>
<line>ATOM 2945 CA LYS B 159 21.731 76.047 32.393 1.00 51.06 C </line>
<line>ATOM 2954 CA ALA B 160 17.931 76.039 32.207 1.00 50.13 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS SER THR PHE GLY PHE PHE LEU VAL TYR LEU ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 18.41 17.10 15.82 14.46 12.49 10.71 10.33 9.90 8.56 6.20 5.00 5.47 3.79 </line>
<line>ILE CA 16.17 15.35 14.62 12.69 10.42 9.77 10.01 8.66 6.16 5.20 5.44 3.81 </line>
<line>LEU CA 15.07 14.81 13.37 10.92 9.77 9.37 8.33 5.99 4.87 5.36 3.79 </line>
<line>TYR CA 14.70 13.70 11.72 10.20 9.20 7.39 5.79 5.22 5.44 3.81 </line>
<line>VAL CA 12.34 10.91 9.78 8.63 6.40 4.69 5.31 5.51 3.79 </line>
<line>LEU CA 10.32 10.08 9.12 6.62 4.98 5.67 5.88 3.79 </line>
<line>PHE CA 10.40 10.36 8.07 5.57 6.15 5.99 3.82 </line>
<line>PHE CA 10.39 9.08 6.29 5.83 6.04 3.79 </line>
<line>GLY CA 8.89 6.72 5.45 5.76 3.80 </line>
<line>PHE CA 5.99 5.13 5.18 3.82 </line>
<line>THR CA 5.01 5.61 3.80 </line>
<line>SER CA 5.41 3.80 </line>
<line>LYS CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 285</line>
<line>ILE CA 387</line>
<line>LEU CA 376</line>
<line>TYR CA 285</line>
<line>VAL CA 341</line>
<line>LEU CA 423</line>
<line>PHE CA 326</line>
<line>PHE CA 245</line>
<line>GLY CA 296</line>
<line>PHE CA 373</line>
<line>THR CA 320</line>
<line>SER CA 250</line>
<line>LYS CA 268</line>
<line>ALA CA 303</line>
</n14>
</entryChain>
<parallel>
<x>-7.414999961853027</x>
<y>-15.567000389099121</y>
<z>-19.552000045776367</z>
</parallel>
<rotation>
<x>-0.9279999732971191</x>
<y>0.3619999885559082</y>
<z>0.09399999678134918</z>
<x>0.15700000524520874</x>
<y>0.1509999930858612</y>
<z>0.9760000109672546</z>
<x>0.33899998664855957</x>
<y>0.9200000166893005</y>
<z>-0.19699999690055847</z>
</rotation>
<rmsd>2.5248711109161377</rmsd>
<dmax>3.872436046600342</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1C8R</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1C8RA</entryIDChain>
<sequence>FFGFS-MRPEV</sequence>
<secondary-structure>HH - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1148 CA PHE A 153 18.028 50.844 19.197 1.00 34.11 C </line>
<line>ATOM 1159 CA PHE A 154 15.608 53.231 20.853 1.00 38.29 C </line>
<line>ATOM 1170 CA GLY A 155 12.466 51.097 21.210 1.00 46.77 C </line>
<line>ATOM 1174 CA PHE A 156 13.681 48.929 24.075 1.00 47.92 C </line>
<line>ATOM 1185 CA SER A 162 16.943 45.843 33.634 1.00 63.80 C </line>
<line>ATOM 1191 CA MET A 163 17.414 42.636 31.587 1.00 57.09 C </line>
<line>ATOM 1199 CA ARG A 164 19.943 39.916 32.448 1.00 50.80 C </line>
<line>ATOM 1210 CA PRO A 165 23.484 40.979 31.518 1.00 44.21 C </line>
<line>ATOM 1217 CA GLU A 166 23.721 37.836 29.360 1.00 36.46 C </line>
<line>ATOM 1226 CA VAL A 167 20.586 38.776 27.522 1.00 34.34 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU PRO ARG MET SER PHE GLY PHE PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 14.88 17.46 16.70 17.28 14.87 15.32 6.81 5.92 3.78 </line>
<line>PHE CA 16.68 19.37 18.05 18.18 15.19 14.82 5.71 3.81 </line>
<line>GLY CA 16.05 19.21 18.17 17.53 14.27 14.21 3.79 </line>
<line>PHE CA 12.75 15.87 14.65 13.80 10.49 10.56 </line>
<line>SER CA 10.03 11.33 8.42 6.75 3.83 </line>
<line>MET CA 6.44 8.23 6.29 3.81 </line>
<line>ARG CA 5.10 5.30 3.81 </line>
<line>PRO CA 5.41 3.82 </line>
<line>GLU CA 3.75 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 289</line>
<line>PHE CA 209</line>
<line>GLY CA 249</line>
<line>PHE CA 274</line>
<line>SER CA 128</line>
<line>MET CA 191</line>
<line>ARG CA 179</line>
<line>PRO CA 168</line>
<line>GLU CA 222</line>
<line>VAL CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3COD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3CODB</entryIDChain>
<sequence>TSKAESMRPEV</sequence>
<secondary-structure>HHGGG HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2932 CA THR B 157 18.841 72.527 35.665 1.00 50.78 C </line>
<line>ATOM 2939 CA SER B 158 21.597 75.107 36.075 1.00 51.55 C </line>
<line>ATOM 2945 CA LYS B 159 21.731 76.047 32.393 1.00 51.06 C </line>
<line>ATOM 2954 CA ALA B 160 17.931 76.039 32.207 1.00 50.13 C </line>
<line>ATOM 2959 CA GLU B 161 18.300 79.118 34.405 1.00 50.28 C </line>
<line>ATOM 2968 CA SER B 162 19.586 81.103 31.428 1.00 49.35 C </line>
<line>ATOM 2974 CA MET B 163 16.311 80.285 29.704 1.00 47.01 C </line>
<line>ATOM 2982 CA ARG B 164 12.946 81.988 30.196 1.00 45.02 C </line>
<line>ATOM 2993 CA PRO B 165 10.846 80.817 33.174 1.00 42.39 C </line>
<line>ATOM 3000 CA GLU B 166 8.502 79.099 30.713 1.00 39.53 C </line>
<line>ATOM 3009 CA VAL B 167 11.401 77.065 29.332 1.00 36.57 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU PRO ARG MET SER GLU ALA LYS SER THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.77 13.21 11.78 12.42 10.11 9.59 6.73 5.01 5.61 3.80 </line>
<line>SER CA 12.38 14.70 12.51 12.52 9.76 7.85 5.45 5.41 3.80 </line>
<line>LYS CA 10.82 13.68 11.91 10.83 7.39 5.58 5.03 3.80 </line>
<line>ALA CA 7.21 10.03 8.60 8.02 5.19 5.38 3.80 </line>
<line>GLU CA 8.81 10.47 7.74 7.39 5.24 3.80 </line>
<line>SER CA 9.36 11.29 8.92 6.81 3.79 </line>
<line>MET CA 5.88 7.96 6.50 3.80 </line>
<line>ARG CA 5.23 5.33 3.83 </line>
<line>PRO CA 5.40 3.81 </line>
<line>GLU CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 320</line>
<line>SER CA 250</line>
<line>LYS CA 268</line>
<line>ALA CA 303</line>
<line>GLU CA 221</line>
<line>SER CA 183</line>
<line>MET CA 244</line>
<line>ARG CA 201</line>
<line>PRO CA 191</line>
<line>GLU CA 231</line>
<line>VAL CA 324</line>
</n14>
</entryChain>
<parallel>
<x>-0.11699999868869781</x>
<y>-31.05699920654297</y>
<z>-6.1620001792907715</z>
</parallel>
<rotation>
<x>-0.7689999938011169</x>
<y>0.6370000243186951</y>
<z>-0.05000000074505806</z>
<x>-0.04800000041723251</x>
<y>0.020999999716877937</y>
<z>0.9990000128746033</z>
<x>0.6370000243186951</x>
<y>0.7710000276565552</y>
<z>0.014000000432133675</z>
</rotation>
<rmsd>3.7373850345611572</rmsd>
<dmax>6.068514823913574</dmax>
</indel>