NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A2AE-2NOTA
confEVID 1A2AE-2NOTA
pdbIDA 1A2A
pdbIDB 2NOT
pdbChainA E
pdbChainB A
identity 0.33610001206398
indelSize 3
alignment <alignment>
<seq1>NLLQFNKMIKEETG--KNAIPFYAFYGCYCGGGGNGKPKDGTDRCCFVHDCCYGRLVNCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDS-KCTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHH -- HHHHHHHHHHHHHH EEE-- EEEEE EEE - HHHHHHHHHHHHHHHHHH GGG GGG - </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1A2AE</entryIDChain>
<sequence>NCNTK--SDIYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 4274 CA ASN E 59 79.620 -21.192 44.638 1.00 33.98 C </line>
<line>ATOM 4282 CA CYS E 61 78.940 -18.917 41.670 1.00 31.75 C </line>
<line>ATOM 4288 CA ASN E 67 78.895 -19.644 37.974 1.00 32.72 C </line>
<line>ATOM 4296 CA THR E 68 81.475 -16.945 37.482 1.00 32.59 C </line>
<line>ATOM 4303 CA LYS E 69 81.389 -17.444 33.740 1.00 32.78 C </line>
<line>ATOM 4312 CA SER E 70 77.635 -17.662 33.161 1.00 34.17 C </line>
<line>ATOM 4318 CA ASP E 71 75.756 -15.598 35.769 1.00 20.18 C </line>
<line>ATOM 4326 CA ILE E 72 74.768 -12.224 34.343 1.00 12.04 C </line>
<line>ATOM 4334 CA TYR E 73 75.077 -9.109 36.454 1.00 16.39 C </line>
<line>ATOM 4346 CA SER E 74 74.045 -5.482 36.275 1.00 25.75 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ILE ASP SER LYS THR ASN CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 18.65 15.28 14.49 11.18 12.17 11.66 8.53 6.88 3.80 </line>
<line>CYS CA 15.28 11.76 10.77 7.48 8.70 8.43 5.28 3.77 </line>
<line>ASN CA 15.07 11.31 9.23 5.58 5.36 5.38 3.77 </line>
<line>THR CA 13.71 10.17 8.78 6.12 5.83 3.78 </line>
<line>LYS CA 14.26 10.80 8.45 6.27 3.80 </line>
<line>SER CA 13.07 9.52 6.26 3.82 </line>
<line>ASP CA 10.27 6.56 3.79 </line>
<line>ILE CA 7.05 3.78 </line>
<line>TYR CA 3.78 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 162</line>
<line>CYS CA 233</line>
<line>ASN CA 236</line>
<line>THR CA 316</line>
<line>LYS CA 288</line>
<line>SER CA 223</line>
<line>ASP CA 271</line>
<line>ILE CA 274</line>
<line>TYR CA 309</line>
<line>SER CA 262</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>81.9800033569336</x>
<y>-32.95500183105469</y>
<z>1.309999942779541</z>
</parallel>
<rotation>
<x>0.1770000010728836</x>
<y>0.8420000076293945</y>
<z>0.5090000033378601</z>
<x>-0.5220000147819519</x>
<y>-0.3580000102519989</y>
<z>0.7739999890327454</z>
<x>0.8339999914169312</x>
<y>-0.40299999713897705</y>
<z>0.37599998712539673</z>
</rotation>
<rmsd>3.0073750019073486</rmsd>
<dmax>3.6324100494384766</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1A2AE</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 4400 CA TYR E 81 83.932 4.284 35.457 1.00 9.37 C </line>
<line>ATOM 4412 CA ILE E 82 82.356 0.859 35.814 1.00 4.88 C </line>
<line>ATOM 4420 CA THR E 83 79.427 0.608 38.242 1.00 9.68 C </line>
<line>ATOM 4427 CA CYS E 84 78.120 -2.670 39.624 1.00 12.23 C </line>
<line>ATOM 4433 CA GLY E 85 74.372 -2.643 40.183 1.00 15.81 C </line>
<line>ATOM 4437 CA LYS E 86 72.471 -4.640 42.757 1.00 19.54 C </line>
<line>ATOM 4446 CA GLY E 88 72.067 -8.378 42.454 1.00 20.08 C </line>
<line>ATOM 4450 CA THR E 89 73.247 -11.434 44.322 1.00 27.00 C </line>
<line>ATOM 4457 CA ASN E 90 76.451 -11.917 46.337 1.00 28.63 C </line>
<line>ATOM 4465 CA CYS E 91 77.582 -13.963 43.411 1.00 27.35 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 20.89 20.90 20.97 18.71 16.26 12.72 9.98 6.45 3.79 </line>
<line>ILE CA 17.33 17.57 17.51 15.34 13.27 9.75 6.70 3.81 </line>
<line>THR CA 15.57 15.21 14.84 12.36 9.81 6.32 3.79 </line>
<line>CYS CA 11.92 11.55 11.07 8.79 6.75 3.79 </line>
<line>GLY CA 12.20 11.32 9.78 6.58 3.77 </line>
<line>LYS CA 10.65 9.03 7.01 3.77 </line>
<line>GLY CA 7.91 6.84 3.77 </line>
<line>THR CA 5.10 3.82 </line>
<line>ASN CA 3.75 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 233</line>
<line>ILE CA 304</line>
<line>THR CA 270</line>
<line>CYS CA 294</line>
<line>GLY CA 223</line>
<line>LYS CA 171</line>
<line>GLY CA 184</line>
<line>THR CA 196</line>
<line>ASN CA 216</line>
<line>CYS CA 268</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>69.25399780273438</x>
<y>-20.641000747680664</y>
<z>14.118000030517578</z>
</parallel>
<rotation>
<x>0.1940000057220459</x>
<y>0.9789999723434448</y>
<z>0.06400000303983688</z>
<x>-0.7450000047683716</x>
<y>0.10499999672174454</y>
<z>0.6589999794960022</z>
<x>0.6380000114440918</x>
<y>-0.17499999701976776</y>
<z>0.75</z>
</rotation>
<rmsd>1.4902679920196533</rmsd>
<dmax>2.8385000228881836</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A2A</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1A2AE</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 4572 CA CYS E 105 93.932 -3.310 35.636 1.00 18.63 C </line>
<line>ATOM 4578 CA PHE E 106 94.383 -4.035 31.938 1.00 25.75 C </line>
<line>ATOM 4589 CA ARG E 107 93.758 -0.367 31.156 1.00 23.27 C </line>
<line>ATOM 4600 CA ARG E 108 96.438 0.604 33.677 1.00 13.79 C </line>
<line>ATOM 4611 CA ASN E 109 98.948 -1.730 32.008 1.00 26.61 C </line>
<line>ATOM 4619 CA LEU E 110 98.321 -0.935 28.309 1.00 31.22 C </line>
<line>ATOM 4627 CA ASP E 111 101.698 0.816 28.287 1.00 41.26 C </line>
<line>ATOM 4635 CA THR E 112 103.533 -2.484 28.554 1.00 38.27 C </line>
<line>ATOM 4642 CA TYR E 113 101.237 -4.954 26.822 1.00 34.47 C </line>
<line>ATOM 4654 CA ASN E 114 103.481 -7.409 25.019 1.00 43.82 C </line>
<line>ATOM 4662 CA ASN E 115 102.301 -8.850 21.705 1.00 42.50 C </line>
<line>ATOM 4670 CA GLY E 116 104.860 -11.595 22.192 1.00 37.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.20 17.17 14.86 11.57 11.96 11.46 8.87 6.39 5.04 5.36 3.80 </line>
<line>PHE CA 16.18 13.81 11.92 8.60 9.88 9.51 6.19 5.11 5.36 3.80 </line>
<line>ARG CA 18.16 15.31 13.48 9.79 10.33 8.52 5.41 5.43 3.81 </line>
<line>ARG CA 18.75 16.34 13.74 10.05 9.28 7.53 5.89 3.81 </line>
<line>ASN CA 15.12 12.96 10.08 6.52 5.79 5.28 3.84 </line>
<line>LEU CA 13.92 11.05 8.91 5.18 5.44 3.80 </line>
<line>ASP CA 14.18 11.71 9.03 5.97 3.79 </line>
<line>THR CA 11.19 9.43 6.06 3.79 </line>
<line>TYR CA 8.87 6.52 3.78 </line>
<line>ASN CA 5.24 3.80 </line>
<line>ASN CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 378</line>
<line>PHE CA 422</line>
<line>ARG CA 328</line>
<line>ARG CA 255</line>
<line>ASN CA 289</line>
<line>LEU CA 285</line>
<line>ASP CA 194</line>
<line>THR CA 224</line>
<line>TYR CA 305</line>
<line>ASN CA 268</line>
<line>ASN CA 250</line>
<line>GLY CA 224</line>
</n14>
</entryChain>
<parallel>
<x>-77.88500213623047</x>
<y>6.446000099182129</y>
<z>7.336999893188477</z>
</parallel>
<rotation>
<x>0.7260000109672546</x>
<y>-0.15800000727176666</y>
<z>0.6700000166893005</z>
<x>0.6880000233650208</x>
<y>0.18400000035762787</y>
<z>-0.7020000219345093</z>
<x>-0.012000000104308128</x>
<y>0.9700000286102295</y>
<z>0.24199999868869781</z>
</rotation>
<rmsd>0.9330639839172363</rmsd>
<dmax>2.027092933654785</dmax>
</indel>