NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CDNA-1CLMA
confEVID 1CDNA-1CLMA
pdbIDA 1CDN
pdbIDB 1CLM
pdbChainA A
pdbChainB A
identity 0.11540000140667
indelSize 3
alignment <alignment>
<seq1>KSPEELKGIFEKYAAKE--GDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEEL---DKNGDGEVSFEEFQ--------------------------------------------------VLVKKISQ--------------------</seq1>
<seq2>LTE-EQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS</seq2>
<ss_1> HHHHHHHHHHH -- EEE HHHHHHHHHHH HHHHHHHH--- EE GGH--------------------------------------------------HHHHHH --------------------</ss_1>
<ss_2> -HHHHHHHHHHHHHH EEE HHHHHHHHHH ----- HHHHHHHHH EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CDN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CDNA</entryIDChain>
<sequence>YAAKE--GDPNQ</sequence>
<secondary-structure>HHH -- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 203 CA TYR A 13 -3.182 3.274 3.157 1.00 0.00 C </line>
<line>ATOM 224 CA ALA A 14 -3.304 6.560 1.206 1.00 0.00 C </line>
<line>ATOM 234 CA ALA A 15 -5.575 8.177 3.818 1.00 0.00 C </line>
<line>ATOM 244 CA LYS A 16 -3.318 6.764 6.580 1.00 0.00 C </line>
<line>ATOM 266 CA GLU A 17 -0.693 9.289 5.401 1.00 0.00 C </line>
<line>ATOM 281 CA GLY A 18 -3.337 11.848 4.458 1.00 0.00 C </line>
<line>ATOM 288 CA ASP A 19 -3.474 12.127 0.657 1.00 0.00 C </line>
<line>ATOM 300 CA PRO A 20 -6.532 9.969 -0.246 1.00 0.00 C </line>
<line>ATOM 314 CA ASN A 21 -5.904 9.686 -4.010 1.00 0.00 C </line>
<line>ATOM 328 CA GLN A 22 -2.130 9.100 -4.189 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ASN PRO ASP GLY GLU LYS ALA ALA TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 9.43 9.99 8.22 9.20 8.67 6.89 4.89 5.50 3.82 </line>
<line>ALA CA 6.08 6.61 4.91 5.60 6.21 5.64 5.38 3.82 </line>
<line>ALA CA 8.77 7.98 4.54 5.48 4.35 5.25 3.84 </line>
<line>LYS CA 11.08 11.29 8.20 7.99 5.51 3.83 </line>
<line>GLU CA 9.70 10.76 8.15 6.19 3.80 </line>
<line>GLY CA 9.15 9.11 5.99 3.81 </line>
<line>ASP CA 5.87 5.80 3.85 </line>
<line>PRO CA 5.97 3.83 </line>
<line>ASN CA 3.82 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>TYR CA 653</line>
<line>ALA CA 608</line>
<line>ALA CA 445</line>
<line>LYS CA 417</line>
<line>GLU CA 402</line>
<line>GLY CA 330</line>
<line>ASP CA 408</line>
<line>PRO CA 448</line>
<line>ASN CA 504</line>
<line>GLN CA 634</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>AFALFDKDGDGT</sequence>
<secondary-structure>HHHHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 95 CA ALA A 15 -8.747 42.166 32.335 1.00 20.66 C </line>
<line>ATOM 100 CA PHE A 16 -10.702 45.110 30.669 1.00 17.42 C </line>
<line>ATOM 111 CA ALA A 17 -10.479 46.895 33.998 1.00 19.08 C </line>
<line>ATOM 116 CA LEU A 18 -6.691 47.062 34.091 1.00 22.69 C </line>
<line>ATOM 124 CA PHE A 19 -6.706 48.862 30.719 1.00 22.00 C </line>
<line>ATOM 135 CA ASP A 20 -9.625 51.161 31.532 1.00 16.68 C </line>
<line>ATOM 143 CA LYS A 21 -7.776 53.381 34.020 1.00 20.86 C </line>
<line>ATOM 152 CA ASP A 22 -10.516 55.875 34.751 1.00 20.74 C </line>
<line>ATOM 160 CA GLY A 23 -13.469 53.528 34.855 1.00 18.32 C </line>
<line>ATOM 164 CA ASP A 24 -15.572 55.043 32.022 1.00 16.32 C </line>
<line>ATOM 172 CA GLY A 25 -16.173 51.846 30.010 1.00 13.73 C </line>
<line>ATOM 176 CA THR A 26 -13.703 52.661 27.179 1.00 11.65 C </line>
</atom-coordinate>
<distance-map>
<line> THR GLY ASP GLY ASP LYS ASP PHE LEU ALA PHE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.70 12.42 14.58 12.56 14.03 11.38 9.07 7.18 5.59 5.30 3.91 </line>
<line>PHE CA 8.84 8.70 11.15 9.80 11.51 9.39 6.21 5.48 5.62 3.78 </line>
<line>ALA CA 9.49 8.53 9.81 7.33 9.01 7.03 5.00 5.37 3.79 </line>
<line>LEU CA 11.33 11.38 12.12 9.40 9.63 6.41 5.65 3.82 </line>
<line>PHE CA 8.71 9.95 10.89 9.20 8.94 5.70 3.80 </line>
<line>ASP CA 6.15 6.76 7.12 5.61 5.78 3.81 </line>
<line>LYS CA 9.08 9.43 8.22 5.76 3.78 </line>
<line>ASP CA 8.82 8.41 5.81 3.77 </line>
<line>GLY CA 7.73 5.80 3.84 </line>
<line>ASP CA 5.71 3.82 </line>
<line>GLY CA 3.84 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ALA CA 271</line>
<line>PHE CA 313</line>
<line>ALA CA 259</line>
<line>LEU CA 254</line>
<line>PHE CA 319</line>
<line>ASP CA 275</line>
<line>LYS CA 224</line>
<line>ASP CA 166</line>
<line>GLY CA 180</line>
<line>ASP CA 176</line>
<line>GLY CA 233</line>
<line>THR CA 290</line>
</n14>
</entryChain>
<parallel>
<x>6.683000087738037</x>
<y>-40.81700134277344</y>
<z>-29.801000595092773</z>
</parallel>
<rotation>
<x>0.5809999704360962</x>
<y>-0.017000000923871994</y>
<z>0.8130000233650208</z>
<x>0.13500000536441803</x>
<y>0.9879999756813049</y>
<z>-0.07500000298023224</z>
<x>-0.8019999861717224</x>
<y>0.15299999713897705</y>
<z>0.5770000219345093</z>
</rotation>
<rmsd>2.909158945083618</rmsd>
<dmax>4.712170124053955</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CDN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CDNA</entryIDChain>
<sequence>LFEEL---DKNGD</sequence>
<secondary-structure>HHHHH--- </secondary-structure>
<atom-coordinate>
<line>ATOM 761 CA LEU A 49 8.187 -1.132 -8.319 1.00 0.00 C </line>
<line>ATOM 780 CA PHE A 50 7.220 2.402 -7.230 1.00 0.00 C </line>
<line>ATOM 800 CA GLU A 51 8.793 3.891 -10.378 1.00 0.00 C </line>
<line>ATOM 815 CA GLU A 52 7.157 1.196 -12.548 1.00 0.00 C </line>
<line>ATOM 830 CA LEU A 53 3.738 1.887 -10.984 1.00 0.00 C </line>
<line>ATOM 849 CA ASP A 54 4.200 5.703 -11.144 1.00 0.00 C </line>
<line>ATOM 861 CA LYS A 55 3.480 5.825 -14.925 1.00 0.00 C </line>
<line>ATOM 883 CA ASN A 56 2.360 9.474 -14.618 1.00 0.00 C </line>
<line>ATOM 897 CA GLY A 57 5.896 10.281 -13.371 1.00 0.00 C </line>
<line>ATOM 904 CA ASP A 58 4.981 12.628 -10.473 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASN LYS ASP LEU GLU GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.29 12.69 13.64 10.69 8.40 6.00 4.94 5.46 3.82 </line>
<line>PHE CA 10.96 10.08 11.32 9.22 5.94 5.15 5.45 3.82 </line>
<line>GLU CA 9.53 7.63 9.51 7.26 5.00 5.47 3.83 </line>
<line>GLU CA 11.82 9.21 9.79 6.37 5.57 3.82 </line>
<line>LEU CA 10.82 8.99 8.52 5.58 3.85 </line>
<line>ASP CA 7.00 5.37 5.45 3.85 </line>
<line>LYS CA 8.27 5.30 3.83 </line>
<line>ASN CA 5.83 3.84 </line>
<line>GLY CA 3.84 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 662</line>
<line>PHE CA 700</line>
<line>GLU CA 517</line>
<line>GLU CA 568</line>
<line>LEU CA 698</line>
<line>ASP CA 578</line>
<line>LYS CA 444</line>
<line>ASN CA 350</line>
<line>GLY CA 333</line>
<line>ASP CA 331</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>LQDMINEVDADGN</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 340 CA LEU A 48 -1.094 53.085 19.472 1.00 26.05 C </line>
<line>ATOM 348 CA GLN A 49 -3.476 54.185 16.736 1.00 24.48 C </line>
<line>ATOM 357 CA ASP A 50 -2.829 51.117 14.673 1.00 24.41 C </line>
<line>ATOM 365 CA MET A 51 -3.472 48.890 17.688 1.00 22.32 C </line>
<line>ATOM 373 CA ILE A 52 -6.832 50.552 18.368 1.00 19.65 C </line>
<line>ATOM 381 CA ASN A 53 -7.871 50.487 14.654 1.00 23.35 C </line>
<line>ATOM 389 CA GLU A 54 -7.518 46.707 14.572 1.00 28.94 C </line>
<line>ATOM 398 CA VAL A 55 -10.030 46.284 17.463 1.00 24.14 C </line>
<line>ATOM 405 CA ASP A 56 -12.278 49.306 17.004 1.00 21.84 C </line>
<line>ATOM 413 CA ALA A 57 -15.244 47.982 15.086 1.00 22.22 C </line>
<line>ATOM 418 CA ASP A 58 -17.678 50.955 15.180 1.00 22.82 C </line>
<line>ATOM 426 CA GLY A 59 -14.972 53.574 14.353 1.00 20.50 C </line>
<line>ATOM 430 CA ASN A 60 -15.576 55.804 17.400 1.00 15.68 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ALA ASP VAL GLU ASN ILE MET ASP GLN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.88 14.80 17.26 15.67 12.06 11.41 10.29 8.71 6.37 5.14 5.47 3.79 </line>
<line>GLN CA 12.23 11.76 14.65 13.40 10.07 10.29 8.77 6.11 5.21 5.38 3.75 </line>
<line>ASP CA 13.85 12.39 14.86 12.81 9.90 9.11 6.44 5.08 5.48 3.80 </line>
<line>MET CA 13.94 12.86 14.57 12.09 8.84 7.06 5.55 5.58 3.81 </line>
<line>ILE CA 10.25 9.57 11.31 9.39 5.75 5.41 5.45 3.86 </line>
<line>ASN CA 9.76 7.75 9.83 7.80 5.13 5.50 3.80 </line>
<line>GLU CA 12.48 10.14 11.03 7.85 5.94 3.85 </line>
<line>VAL CA 11.02 9.34 9.25 5.98 3.79 </line>
<line>ASP CA 7.30 5.70 5.93 3.77 </line>
<line>ALA CA 8.16 5.65 3.84 </line>
<line>ASP CA 5.73 3.86 </line>
<line>GLY CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 253</line>
<line>GLN CA 220</line>
<line>ASP CA 192</line>
<line>MET CA 288</line>
<line>ILE CA 313</line>
<line>ASN CA 226</line>
<line>GLU CA 242</line>
<line>VAL CA 286</line>
<line>ASP CA 249</line>
<line>ALA CA 189</line>
<line>ASP CA 147</line>
<line>GLY CA 155</line>
<line>ASN CA 170</line>
</n14>
</entryChain>
<parallel>
<x>13.505000114440918</x>
<y>-47.10300064086914</y>
<z>-28.04400062561035</z>
</parallel>
<rotation>
<x>0.6779999732971191</x>
<y>-0.6620000004768372</y>
<z>0.32100000977516174</z>
<x>-0.11500000208616257</x>
<y>0.335999995470047</y>
<z>0.9350000023841858</z>
<x>-0.7260000109672546</x>
<y>-0.6700000166893005</y>
<z>0.15199999511241913</z>
</rotation>
<rmsd>2.5477099418640137</rmsd>
<dmax>3.5527238845825195</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>VMRSL-----GQNPT</sequence>
<secondary-structure>HHHH ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 242 CA VAL A 35 -0.316 49.955 30.122 1.00 27.94 C </line>
<line>ATOM 249 CA MET A 36 2.414 49.400 27.483 1.00 32.30 C </line>
<line>ATOM 257 CA ARG A 37 4.723 51.809 29.375 1.00 34.74 C </line>
<line>ATOM 268 CA SER A 38 4.234 49.846 32.567 1.00 37.39 C </line>
<line>ATOM 274 CA LEU A 39 5.413 46.712 30.717 1.00 38.05 C </line>
<line>ATOM 282 CA GLY A 40 8.647 48.496 29.565 1.00 37.57 C </line>
<line>ATOM 286 CA GLN A 41 7.593 49.321 25.967 1.00 39.19 C </line>
<line>ATOM 295 CA ASN A 42 7.049 52.985 25.028 1.00 39.14 C </line>
<line>ATOM 303 CA PRO A 43 4.980 53.138 21.760 1.00 36.55 C </line>
<line>ATOM 310 CA THR A 44 4.455 56.395 19.813 1.00 36.83 C </line>
</atom-coordinate>
<distance-map>
<line> THR PRO ASN GLN GLY LEU SER ARG MET VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.06 10.40 9.45 8.96 9.10 6.61 5.17 5.42 3.84 </line>
<line>MET CA 10.58 7.30 6.35 5.40 6.63 5.17 5.42 3.84 </line>
<line>ARG CA 10.61 7.73 5.07 5.10 5.14 5.32 3.78 </line>
<line>SER CA 14.34 11.32 8.64 7.42 5.51 3.83 </line>
<line>LEU CA 14.61 11.03 8.63 5.84 3.87 </line>
<line>GLY CA 13.23 9.79 6.58 3.84 </line>
<line>GLN CA 9.89 6.25 3.82 </line>
<line>ASN CA 6.75 3.87 </line>
<line>PRO CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 249</line>
<line>MET CA 223</line>
<line>ARG CA 174</line>
<line>SER CA 146</line>
<line>LEU CA 127</line>
<line>GLY CA 107</line>
<line>GLN CA 142</line>
<line>ASN CA 158</line>
<line>PRO CA 189</line>
<line>THR CA 168</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CDN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CDNA</entryIDChain>
<sequence>LLQTEFPSLLKGGST</sequence>
<secondary-structure>HHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 487 CA LEU A 31 0.024 -1.753 1.950 1.00 0.00 C </line>
<line>ATOM 506 CA LEU A 32 2.336 -4.353 0.413 1.00 0.00 C </line>
<line>ATOM 525 CA GLN A 33 3.611 -5.539 3.836 1.00 0.00 C </line>
<line>ATOM 542 CA THR A 34 0.042 -6.125 5.042 1.00 0.00 C </line>
<line>ATOM 556 CA GLU A 35 -1.750 -7.364 1.905 1.00 0.00 C </line>
<line>ATOM 571 CA PHE A 36 1.053 -8.645 -0.389 1.00 0.00 C </line>
<line>ATOM 591 CA PRO A 37 4.356 -9.021 1.555 1.00 0.00 C </line>
<line>ATOM 605 CA SER A 38 5.941 -10.905 -1.388 1.00 0.00 C </line>
<line>ATOM 616 CA LEU A 39 5.523 -7.966 -3.793 1.00 0.00 C </line>
<line>ATOM 635 CA LEU A 40 7.910 -5.834 -1.678 1.00 0.00 C </line>
<line>ATOM 654 CA LYS A 41 10.500 -7.892 -3.628 1.00 0.00 C </line>
<line>ATOM 676 CA GLY A 42 8.369 -9.864 -6.105 1.00 0.00 C </line>
<line>ATOM 683 CA GLY A 43 8.088 -8.547 -9.677 1.00 0.00 C </line>
<line>ATOM 690 CA SER A 44 10.337 -5.614 -8.705 1.00 0.00 C </line>
<line>ATOM 701 CA THR A 45 11.964 -4.400 -5.480 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER GLY GLY LYS LEU LEU SER PRO PHE GLU THR GLN LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.31 15.32 15.70 14.15 13.36 9.59 10.09 11.40 8.47 7.35 5.88 5.35 5.55 3.80 </line>
<line>LEU CA 11.29 12.20 12.35 10.45 9.77 6.13 6.40 7.69 5.21 4.55 5.29 5.46 3.84 </line>
<line>GLN CA 12.56 14.23 14.55 11.84 10.43 7.00 8.23 7.84 4.23 5.83 5.98 3.81 </line>
<line>THR CA 15.99 17.18 16.95 14.41 13.70 10.35 10.56 9.95 6.26 6.07 3.82 </line>
<line>GLU CA 15.86 16.18 15.24 13.15 13.45 10.42 9.26 9.08 6.34 3.84 </line>
<line>PHE CA 12.77 12.83 11.65 9.36 10.02 7.52 5.66 5.48 3.85 </line>
<line>PRO CA 11.35 12.36 11.85 8.69 8.12 5.77 5.57 3.84 </line>
<line>SER CA 9.76 10.04 8.88 5.41 5.91 5.45 3.82 </line>
<line>LEU CA 7.55 7.27 6.45 4.13 4.98 3.84 </line>
<line>LEU CA 5.74 7.44 8.45 6.00 3.84 </line>
<line>LYS CA 4.22 5.57 6.55 3.82 </line>
<line>GLY CA 6.57 5.36 3.82 </line>
<line>GLY CA 7.06 3.82 </line>
<line>SER CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>LEU CA 758</line>
<line>LEU CA 753</line>
<line>GLN CA 521</line>
<line>THR CA 488</line>
<line>GLU CA 562</line>
<line>PHE CA 588</line>
<line>PRO CA 462</line>
<line>SER CA 409</line>
<line>LEU CA 624</line>
<line>LEU CA 576</line>
<line>LYS CA 431</line>
<line>GLY CA 442</line>
<line>GLY CA 462</line>
<line>SER CA 479</line>
<line>THR CA 448</line>
</n14>
</entryChain>
<parallel>
<x>1.0670000314712524</x>
<y>56.244998931884766</y>
<z>29.63599967956543</z>
</parallel>
<rotation>
<x>0.6769999861717224</x>
<y>0.7360000014305115</y>
<z>0.024000000208616257</z>
<x>-0.7300000190734863</x>
<y>0.675000011920929</y>
<z>-0.1080000028014183</z>
<x>-0.09600000083446503</x>
<y>0.0560000017285347</y>
<z>0.9940000176429749</z>
</rotation>
<rmsd>4.376826763153076</rmsd>
<dmax>6.339984893798828</dmax>
</indel>