NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CERD-2GD1R
confEVID 1CERD-2GD1R
pdbIDA 1CER
pdbIDB 2GD1
pdbChainA D
pdbChainB R
identity 0.621599972248077
indelSize 2
alignment <alignment>
<seq1>-MKVGINGFGRIGRQVFRILHSRG-VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKGV</seq1>
<seq2>AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL</seq2>
<ss_1>- EEEE HHHHHHHHHHHH - EEE HHHHHHHHEEE EEE EEE EEEEE EEEEEE EEEE HHHGGGG EEEE EEE HHHHHHHHHHHHHHH EEEEEEEE GGG EEE GGGG EEEEEE EEEEEEEEE HHHHHHHHHHHHH EEEE EEEEGGG EEEE-EEEEEEEEEE HHHHHHHHHHHHHHHH </ss_1>
<ss_2> EEEEEE HHHHHHHHHHH EEE EEE HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGHHHH EEEE GGG HHHH EEE HHHHHHHHHHHHHHH EEEEEEEE EEE HHHHHHHH EEEEEE EEEEEEEE HHHHHHHHHHHHH EE GGGG EEEEGGG EEE EEEEEEEEEE HHHHHHHHHHHHHHGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CER</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1CERD</entryIDChain>
<sequence>LHSRG-VEVAL</sequence>
<secondary-structure>HHH - E</secondary-structure>
<atom-coordinate>
<line>ATOM 17544 CA LEU D 19 7.367 61.216 14.607 1.00 35.33 C </line>
<line>ATOM 17552 CA HIS D 20 6.439 64.223 16.696 1.00 42.82 C </line>
<line>ATOM 17562 CA SER D 21 5.097 66.055 13.573 1.00 44.62 C </line>
<line>ATOM 17568 CA ARG D 22 3.187 62.983 12.366 1.00 48.04 C </line>
<line>ATOM 17579 CA GLY D 23 1.120 62.407 15.503 1.00 46.45 C </line>
<line>ATOM 17583 CA VAL D 25 2.869 59.346 16.833 1.00 44.69 C </line>
<line>ATOM 17590 CA GLU D 26 3.502 59.490 20.576 1.00 42.50 C </line>
<line>ATOM 17595 CA VAL D 27 7.073 58.908 21.881 1.00 37.44 C </line>
<line>ATOM 17602 CA ALA D 28 7.058 58.083 25.528 1.00 38.29 C </line>
<line>ATOM 17607 CA LEU D 29 10.629 57.534 26.642 1.00 38.95 C </line>
</atom-coordinate>
<distance-map>
<line> LEU ALA VAL GLU VAL GLY ARG SER HIS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.00 11.37 7.64 7.32 5.36 6.42 5.06 5.44 3.78 </line>
<line>HIS CA 12.70 10.77 7.45 6.79 6.05 5.75 5.56 3.86 </line>
<line>SER CA 16.55 14.50 11.14 9.73 7.78 5.73 3.81 </line>
<line>ARG CA 17.00 14.57 11.06 8.93 5.77 3.80 </line>
<line>GLY CA 15.44 12.43 9.40 6.32 3.77 </line>
<line>VAL CA 12.64 9.73 6.58 3.80 </line>
<line>GLU CA 9.56 6.26 3.85 </line>
<line>VAL CA 6.10 3.74 </line>
<line>ALA CA 3.78 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 402</line>
<line>HIS CA 354</line>
<line>SER CA 268</line>
<line>ARG CA 241</line>
<line>GLY CA 218</line>
<line>VAL CA 297</line>
<line>GLU CA 322</line>
<line>VAL CA 435</line>
<line>ALA CA 392</line>
<line>LEU CA 460</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GD1</pdbID>
<pdbChain>R</pdbChain>
<entryIDChain>2GD1R</entryIDChain>
<sequence>ALKNPDIEVVA</sequence>
<secondary-structure>HH EEE E</secondary-structure>
<atom-coordinate>
<line>ATOM 7723 CA ALA R 19 10.996 41.319 5.832 1.00 16.65 C </line>
<line>ATOM 7728 CA LEU R 20 8.043 42.982 4.119 1.00 22.48 C </line>
<line>ATOM 7736 CA LYS R 21 6.938 43.958 7.673 1.00 33.47 C </line>
<line>ATOM 7745 CA ASN R 22 10.345 45.430 8.504 1.00 35.98 C </line>
<line>ATOM 7753 CA PRO R 23 11.400 48.954 7.620 1.00 43.55 C </line>
<line>ATOM 7760 CA ASP R 24 15.085 48.383 8.648 1.00 40.58 C </line>
<line>ATOM 7768 CA ILE R 25 15.639 45.561 6.145 1.00 33.13 C </line>
<line>ATOM 7776 CA GLU R 26 15.258 45.669 2.380 1.00 31.23 C </line>
<line>ATOM 7785 CA VAL R 27 15.275 42.634 0.150 1.00 20.62 C </line>
<line>ATOM 7792 CA VAL R 28 16.789 43.922 -3.074 1.00 17.06 C </line>
<line>ATOM 7799 CA ALA R 29 17.539 40.669 -4.905 1.00 15.60 C </line>
</atom-coordinate>
<distance-map>
<line> ALA VAL VAL GLU ILE ASP PRO ASN LYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.59 10.94 7.23 7.00 6.30 8.63 7.85 4.95 5.18 3.80 </line>
<line>LEU CA 13.30 11.36 8.26 7.89 8.27 9.96 7.69 5.52 3.85 </line>
<line>LYS CA 16.78 14.58 11.31 10.01 8.98 9.32 6.70 3.80 </line>
<line>ASN CA 15.94 13.34 10.10 7.85 5.80 5.59 3.78 </line>
<line>PRO CA 16.22 12.99 10.52 7.29 5.63 3.87 </line>
<line>ASP CA 15.79 12.66 10.26 6.83 3.81 </line>
<line>ILE CA 12.23 9.43 6.68 3.79 </line>
<line>GLU CA 9.13 5.93 3.77 </line>
<line>VAL CA 5.88 3.79 </line>
<line>VAL CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ALA CA 400</line>
<line>LEU CA 354</line>
<line>LYS CA 272</line>
<line>ASN CA 260</line>
<line>PRO CA 194</line>
<line>ASP CA 237</line>
<line>ILE CA 327</line>
<line>GLU CA 351</line>
<line>VAL CA 449</line>
<line>VAL CA 381</line>
<line>ALA CA 446</line>
</n14>
</entryChain>
<parallel>
<x>-7.15500020980835</x>
<y>17.264999389648438</y>
<z>11.201000213623047</z>
</parallel>
<rotation>
<x>-0.20999999344348907</x>
<y>-0.949999988079071</y>
<z>0.23100000619888306</z>
<x>-0.9380000233650208</x>
<y>0.2630000114440918</y>
<z>0.22699999809265137</z>
<x>-0.2759999930858612</x>
<y>-0.16899999976158142</y>
<z>-0.9459999799728394</z>
</rotation>
<rmsd>0.9121339917182922</rmsd>
<dmax>1.35214102268219</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CER</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1CERD</entryIDChain>
<sequence>TKALG-NMVKV</sequence>
<secondary-structure> EEEE-EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 19599 CA THR D 297 22.807 59.620 -16.521 1.00 21.01 C </line>
<line>ATOM 19606 CA LYS D 298 25.339 58.217 -19.034 1.00 23.77 C </line>
<line>ATOM 19615 CA ALA D 299 25.110 55.075 -21.047 1.00 23.19 C </line>
<line>ATOM 19620 CA LEU D 300 27.650 53.267 -23.148 1.00 26.34 C </line>
<line>ATOM 19628 CA GLY D 302 25.564 50.601 -24.835 1.00 27.62 C </line>
<line>ATOM 19632 CA ASN D 303 24.480 48.306 -22.023 1.00 25.13 C </line>
<line>ATOM 19640 CA MET D 304 26.773 49.946 -19.555 1.00 21.65 C </line>
<line>ATOM 19648 CA VAL D 305 24.962 52.666 -17.743 1.00 18.99 C </line>
<line>ATOM 19655 CA LYS D 306 25.900 55.176 -14.962 1.00 17.28 C </line>
<line>ATOM 19664 CA VAL D 307 23.169 56.705 -12.765 1.00 16.06 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS VAL MET ASN GLY LEU ALA LYS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.77 5.63 7.38 10.89 12.69 12.57 10.38 6.82 3.83 </line>
<line>LYS CA 6.80 5.11 5.71 8.41 10.39 9.58 6.84 3.74 </line>
<line>ALA CA 8.66 6.14 4.09 5.59 6.87 5.88 3.76 </line>
<line>LEU CA 11.82 8.59 6.07 4.97 5.99 3.78 </line>
<line>GLY CA 13.74 10.89 7.41 5.46 3.79 </line>
<line>ASN CA 12.57 9.95 6.13 3.75 </line>
<line>MET CA 10.24 7.02 3.74 </line>
<line>VAL CA 6.66 3.86 </line>
<line>LYS CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 351</line>
<line>LYS CA 266</line>
<line>ALA CA 271</line>
<line>LEU CA 201</line>
<line>GLY CA 200</line>
<line>ASN CA 248</line>
<line>MET CA 278</line>
<line>VAL CA 367</line>
<line>LYS CA 379</line>
<line>VAL CA 462</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GD1</pdbID>
<pdbChain>R</pdbChain>
<entryIDChain>2GD1R</entryIDChain>
<sequence>TMVIDGKMVKV</sequence>
<secondary-structure> EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 9816 CA THR R 297 3.260 22.405 32.905 1.00 11.38 C </line>
<line>ATOM 9823 CA MET R 298 3.468 19.432 35.252 1.00 13.43 C </line>
<line>ATOM 9831 CA VAL R 299 5.870 18.483 38.097 1.00 17.89 C </line>
<line>ATOM 9838 CA ILE R 300 6.596 15.146 39.766 1.00 19.57 C </line>
<line>ATOM 9846 CA ASP R 301 8.435 14.658 43.092 1.00 27.22 C </line>
<line>ATOM 9854 CA GLY R 302 9.344 18.354 43.023 1.00 27.74 C </line>
<line>ATOM 9858 CA LYS R 303 12.359 17.869 40.716 1.00 27.49 C </line>
<line>ATOM 9867 CA MET R 304 11.220 16.475 37.305 1.00 26.94 C </line>
<line>ATOM 9875 CA VAL R 305 9.251 19.035 35.214 1.00 19.57 C </line>
<line>ATOM 9882 CA LYS R 306 7.342 18.744 31.893 1.00 14.78 C </line>
<line>ATOM 9891 CA VAL R 307 7.172 21.912 29.774 1.00 11.86 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LYS VAL MET LYS GLY ASP ILE VAL MET THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 5.03 5.58 7.25 10.86 12.82 12.48 13.80 10.53 7.01 3.79 </line>
<line>MET CA 7.06 5.17 5.80 8.55 10.55 9.80 10.44 6.97 3.84 </line>
<line>VAL CA 9.10 6.38 4.48 5.77 7.02 6.03 6.79 3.80 </line>
<line>ILE CA 12.08 8.69 6.55 5.40 6.44 5.33 3.83 </line>
<line>ASP CA 15.22 11.97 9.05 6.67 5.60 3.81 </line>
<line>GLY CA 13.89 11.32 7.84 6.30 3.83 </line>
<line>LYS CA 12.77 10.19 6.43 3.86 </line>
<line>MET CA 10.13 7.03 3.85 </line>
<line>VAL CA 6.50 3.84 </line>
<line>LYS CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 354</line>
<line>MET CA 279</line>
<line>VAL CA 265</line>
<line>ILE CA 200</line>
<line>ASP CA 164</line>
<line>GLY CA 219</line>
<line>LYS CA 259</line>
<line>MET CA 292</line>
<line>VAL CA 379</line>
<line>LYS CA 381</line>
<line>VAL CA 475</line>
</n14>
</entryChain>
<parallel>
<x>17.777999877929688</x>
<y>35.52399826049805</y>
<z>-58.28200149536133</z>
</parallel>
<rotation>
<x>-0.07199999690055847</x>
<y>-0.9419999718666077</y>
<z>0.3269999921321869</z>
<x>-0.9380000233650208</x>
<y>0.17499999701976776</y>
<z>0.2980000078678131</z>
<x>-0.33799999952316284</x>
<y>-0.28600001335144043</y>
<z>-0.8970000147819519</z>
</rotation>
<rmsd>0.6589149832725525</rmsd>
<dmax>1.4819560050964355</dmax>
</indel>