NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CESB-1ONAD
confEVID 1CESB-1ONAD
pdbIDA 1CES
pdbIDB 1ONA
pdbChainA B
pdbChainB D
identity 0.924099981784821
indelSize 1
alignment <alignment>
<seq1>ADTIVAVELDTYPNT-----SYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVS-------SSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq1>
<seq2>ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLK------TNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN</seq2>
<ss_1> EEEEEEEE ----- EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEEE EEEEEEEEEEEEE EEEEEEEEE EEEEEEEE EEEEGGEEE ------- EEEEEE EEEEEEEEEEEE EEEEEEEEEE GGG </ss_1>
<ss_2> EEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEEE ------ EEEEEEE EEEEEEE EEE EE EEEEEE EEEEEEEEEEEE EEEEEEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CES</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CESB</entryIDChain>
<sequence>TYPNT-----SYPHI</sequence>
<secondary-structure> ----- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1787 CA THR B 11 17.223 -20.722 -0.097 1.00 27.69 C </line>
<line>ATOM 1794 CA TYR B 12 20.861 -21.853 -0.059 1.00 38.88 C </line>
<line>ATOM 1806 CA PRO B 13 20.728 -25.242 -1.753 1.00 68.30 C </line>
<line>ATOM 1813 CA ASN B 14 22.800 -26.992 0.880 1.00 93.12 C </line>
<line>ATOM 1822 CA SER B 21 17.390 -28.856 0.068 1.00 75.98 C </line>
<line>ATOM 1828 CA TYR B 22 14.394 -26.660 -0.700 1.00 54.13 C </line>
<line>ATOM 1840 CA PRO B 23 13.999 -23.048 0.469 1.00 34.84 C </line>
<line>ATOM 1847 CA HIS B 24 12.915 -23.209 4.086 1.00 22.08 C </line>
<line>ATOM 1857 CA ILE B 25 12.136 -21.177 7.138 1.00 19.39 C </line>
</atom-coordinate>
<distance-map>
<line> ILE HIS PRO TYR SER ASN PRO TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.86 6.50 4.02 6.61 8.14 8.45 5.95 3.81 </line>
<line>TYR CA 11.33 9.06 6.99 8.08 7.82 5.57 3.79 </line>
<line>PRO CA 13.02 9.96 7.42 6.58 5.25 3.78 </line>
<line>ASN CA 13.66 11.06 9.65 8.56 5.78 </line>
<line>SER CA 11.69 8.25 6.74 3.79 </line>
<line>TYR CA 9.83 6.08 3.82 </line>
<line>PRO CA 7.17 3.78 </line>
<line>HIS CA 3.75 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>THR CA 400</line>
<line>TYR CA 356</line>
<line>PRO CA 255</line>
<line>ASN CA 219</line>
<line>SER CA 206</line>
<line>TYR CA 228</line>
<line>PRO CA 344</line>
<line>HIS CA 381</line>
<line>ILE CA 452</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ONA</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1ONAD</entryIDChain>
<sequence>TYPNTDIGDPSYPHI</sequence>
<secondary-structure> EE</secondary-structure>
<atom-coordinate>
<line>ATOM 5342 CA THR D 11 20.460 22.952 45.786 1.00 13.36 C </line>
<line>ATOM 5349 CA TYR D 12 22.923 24.060 48.485 1.00 10.70 C </line>
<line>ATOM 5361 CA PRO D 13 26.574 22.876 48.578 1.00 18.12 C </line>
<line>ATOM 5368 CA ASN D 14 27.905 21.824 52.067 1.00 20.88 C </line>
<line>ATOM 5376 CA THR D 15 31.600 21.440 51.324 1.00 20.25 C </line>
<line>ATOM 5383 CA ASP D 16 32.125 20.600 55.012 1.00 20.64 C </line>
<line>ATOM 5391 CA ILE D 17 30.208 17.331 54.790 1.00 15.48 C </line>
<line>ATOM 5399 CA GLY D 18 31.646 16.254 51.425 1.00 23.25 C </line>
<line>ATOM 5403 CA ASP D 19 29.512 18.197 48.970 1.00 22.71 C </line>
<line>ATOM 5411 CA PRO D 20 31.042 19.555 45.770 1.00 20.98 C </line>
<line>ATOM 5418 CA SER D 21 31.152 23.378 45.406 1.00 23.78 C </line>
<line>ATOM 5424 CA TYR D 22 27.939 23.651 43.469 1.00 16.97 C </line>
<line>ATOM 5436 CA PRO D 23 24.334 22.498 43.361 1.00 13.89 C </line>
<line>ATOM 5443 CA HIS D 24 24.373 18.874 42.345 1.00 11.99 C </line>
<line>ATOM 5453 CA ILE D 25 22.299 15.734 41.932 1.00 12.95 C </line>
</atom-coordinate>
<distance-map>
<line> ILE HIS PRO TYR SER PRO ASP GLY ILE ASP THR ASN PRO TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.39 6.62 4.59 7.86 10.71 11.11 10.71 14.21 14.41 15.06 12.53 9.81 6.72 3.82 </line>
<line>TYR CA 10.61 8.17 5.54 7.11 8.81 9.67 8.83 12.07 11.75 11.80 9.50 6.53 3.84 </line>
<line>PRO CA 10.65 7.73 5.69 5.34 5.59 6.24 5.54 8.81 9.09 8.80 5.90 3.88 </line>
<line>ASN CA 13.09 10.76 9.43 8.79 7.57 7.39 5.03 6.74 5.74 5.29 3.79 </line>
<line>THR CA 14.40 11.81 10.83 8.94 6.24 5.89 4.52 5.19 5.55 3.82 </line>
<line>ASP CA 17.07 14.95 14.14 12.65 10.05 9.36 7.01 5.66 3.80 </line>
<line>ILE CA 15.18 13.83 13.85 13.16 11.20 9.33 5.93 3.81 </line>
<line>GLY CA 13.33 11.93 12.55 11.48 9.34 6.58 3.79 </line>
<line>ASP CA 10.37 8.41 8.76 7.90 6.50 3.80 </line>
<line>PRO CA 10.28 7.53 7.71 5.63 3.84 </line>
<line>SER CA 12.20 8.70 7.17 3.76 </line>
<line>TYR CA 9.84 6.07 3.79 </line>
<line>PRO CA 7.21 3.76 </line>
<line>HIS CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>THR CA 499</line>
<line>TYR CA 434</line>
<line>PRO CA 355</line>
<line>ASN CA 311</line>
<line>THR CA 214</line>
<line>ASP CA 181</line>
<line>ILE CA 244</line>
<line>GLY CA 256</line>
<line>ASP CA 312</line>
<line>PRO CA 262</line>
<line>SER CA 225</line>
<line>TYR CA 276</line>
<line>PRO CA 387</line>
<line>HIS CA 420</line>
<line>ILE CA 479</line>
</n14>
</entryChain>
<parallel>
<x>-9.071999549865723</x>
<y>-47.40800094604492</y>
<z>-46.948001861572266</z>
</parallel>
<rotation>
<x>-0.3700000047683716</x>
<y>-0.902999997138977</y>
<z>-0.2160000056028366</z>
<x>-0.13199999928474426</x>
<y>0.28200000524520874</y>
<z>-0.949999988079071</z>
<x>0.9190000295639038</x>
<y>-0.3230000138282776</y>
<z>-0.2240000069141388</z>
</rotation>
<rmsd>2.380737066268921</rmsd>
<dmax>3.3407390117645264</dmax>
</indel>