NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CFCA-2CTNA
confEVID 1CFCA-2CTNA
pdbIDA 1CFC
pdbIDB 2CTN
pdbChainA A
pdbChainB A
identity 0.287699997425079
indelSize 3
alignment <alignment>
<seq1>-------ADQLTEEQIAEFKEAFSLFDK-DGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK</seq1>
<seq2>ADIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEV-DEDGSGTVDFDEFLVMMV--------------------------------------------------RSMK--------------DDS----</seq2>
<ss_1>------- HHHHHHHHHHHGGG - EEEEE HHHHHHH -HHHHHHHHHHH EEEEEHHHHHHHHHH HHHHHHHHHH EEEHHHHHHHHH HHHHHHHHHH EEE HHHHHHHH </ss_1>
<ss_2> HHHHHGGG HHHHHHHHHHHHHHH HHHHHHHH HHHHHHHHH- HHHHHHH--------------------------------------------------HHHH--------------H ----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CFC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CFCA</entryIDChain>
<sequence>SLFDK-DGDGT</sequence>
<secondary-structure>GGG - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 254 CA SER A 17 5.202 -9.589 0.585 1.00 0.22 C </line>
<line>ATOM 265 CA LEU A 18 5.112 -9.741 4.412 1.00 0.23 C </line>
<line>ATOM 284 CA PHE A 19 1.285 -9.811 3.999 1.00 0.11 C </line>
<line>ATOM 304 CA ASP A 20 1.012 -11.657 0.647 1.00 0.05 C </line>
<line>ATOM 316 CA LYS A 21 -0.051 -15.058 2.058 1.00 0.08 C </line>
<line>ATOM 338 CA ASP A 22 -1.977 -15.785 -1.160 1.00 0.12 C </line>
<line>ATOM 350 CA GLY A 23 1.187 -16.059 -3.293 1.00 0.24 C </line>
<line>ATOM 357 CA ASP A 24 -0.922 -13.940 -5.681 1.00 0.28 C </line>
<line>ATOM 369 CA GLY A 25 1.285 -10.852 -5.276 1.00 0.13 C </line>
<line>ATOM 376 CA THR A 26 -1.689 -9.009 -3.672 1.00 0.10 C </line>
</atom-coordinate>
<distance-map>
<line> THR GLY ASP GLY ASP LYS ASP PHE LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 8.12 7.16 9.78 8.55 9.64 7.72 4.67 5.20 3.83 </line>
<line>LEU CA 10.59 10.48 12.49 10.71 10.86 7.78 5.89 3.85 </line>
<line>PHE CA 8.27 9.33 10.75 9.60 8.54 5.75 3.84 </line>
<line>ASP CA 5.74 5.98 7.00 5.91 5.41 3.83 </line>
<line>LYS CA 8.49 8.56 7.87 5.58 3.82 </line>
<line>ASP CA 7.23 7.21 5.00 3.83 </line>
<line>GLY CA 7.62 5.57 3.83 </line>
<line>ASP CA 5.38 3.82 </line>
<line>GLY CA 3.85 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>SER CA 523</line>
<line>LEU CA 469</line>
<line>PHE CA 514</line>
<line>ASP CA 466</line>
<line>LYS CA 318</line>
<line>ASP CA 277</line>
<line>GLY CA 269</line>
<line>ASP CA 314</line>
<line>GLY CA 443</line>
<line>THR CA 546</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2CTN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CTNA</entryIDChain>
<sequence>DIFVLGAEDGS</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 366 CA ASP A 25 59.877 -5.428 -6.891 1.00 0.53 C </line>
<line>ATOM 378 CA ILE A 26 61.411 -8.917 -7.203 1.00 0.63 C </line>
<line>ATOM 397 CA PHE A 27 62.093 -8.955 -3.442 1.00 0.79 C </line>
<line>ATOM 417 CA VAL A 28 58.870 -7.083 -2.600 1.00 0.65 C </line>
<line>ATOM 433 CA LEU A 29 56.870 -10.105 -3.836 1.00 0.99 C </line>
<line>ATOM 452 CA GLY A 30 54.708 -10.719 -0.744 1.00 1.58 C </line>
<line>ATOM 459 CA ALA A 31 57.073 -8.423 1.198 1.00 0.95 C </line>
<line>ATOM 469 CA GLU A 32 55.783 -7.146 4.565 1.00 1.90 C </line>
<line>ATOM 484 CA ASP A 33 54.186 -4.106 2.880 1.00 2.11 C </line>
<line>ATOM 496 CA GLY A 34 54.989 -3.690 -0.839 1.00 1.40 C </line>
<line>ATOM 503 CA SER A 35 58.518 -2.823 0.348 1.00 0.70 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLY ASP GLU ALA GLY LEU VAL PHE ILE ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 7.81 7.97 11.38 12.29 9.07 9.62 6.34 4.71 5.41 3.82 </line>
<line>ILE CA 10.13 10.44 13.30 13.16 9.47 9.48 5.78 5.57 3.82 </line>
<line>PHE CA 8.05 9.22 11.23 10.35 6.86 8.06 5.36 3.82 </line>
<line>VAL CA 5.19 5.45 7.80 7.80 4.41 5.83 3.83 </line>
<line>LEU CA 8.56 7.33 9.40 8.97 5.31 3.82 </line>
<line>GLY CA 8.83 7.04 7.56 6.49 3.83 </line>
<line>ALA CA 5.85 5.56 5.46 3.83 </line>
<line>GLU CA 6.63 6.46 3.83 </line>
<line>ASP CA 5.18 3.83 </line>
<line>GLY CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASP CA 487</line>
<line>ILE CA 435</line>
<line>PHE CA 528</line>
<line>VAL CA 496</line>
<line>LEU CA 339</line>
<line>GLY CA 281</line>
<line>ALA CA 417</line>
<line>GLU CA 376</line>
<line>ASP CA 358</line>
<line>GLY CA 393</line>
<line>SER CA 579</line>
</n14>
</entryChain>
<parallel>
<x>-56.91400146484375</x>
<y>-5.184999942779541</y>
<z>2.111999988555908</z>
</parallel>
<rotation>
<x>-0.4169999957084656</x>
<y>0.8230000138282776</y>
<z>0.38600000739097595</z>
<x>0.3149999976158142</x>
<y>0.5289999842643738</y>
<z>-0.7879999876022339</z>
<x>-0.8529999852180481</x>
<y>-0.2070000022649765</y>
<z>-0.47999998927116394</z>
</rotation>
<rmsd>2.1118509769439697</rmsd>
<dmax>4.296685218811035</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CFC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CFCA</entryIDChain>
<sequence>GQNPT-EAELQ</sequence>
<secondary-structure> -HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 601 CA GLY A 40 6.862 3.750 9.759 1.00 0.12 C </line>
<line>ATOM 608 CA GLN A 41 3.840 5.572 8.229 1.00 0.28 C </line>
<line>ATOM 625 CA ASN A 42 0.705 6.206 10.370 1.00 0.33 C </line>
<line>ATOM 639 CA PRO A 43 -2.191 7.511 8.235 1.00 0.34 C </line>
<line>ATOM 653 CA THR A 44 -5.494 7.975 10.111 1.00 0.32 C </line>
<line>ATOM 667 CA GLU A 45 -8.327 5.514 9.467 1.00 0.32 C </line>
<line>ATOM 682 CA ALA A 46 -10.202 8.100 7.376 1.00 0.16 C </line>
<line>ATOM 692 CA GLU A 47 -7.089 8.768 5.267 1.00 0.27 C </line>
<line>ATOM 707 CA LEU A 48 -6.967 5.013 4.625 1.00 0.33 C </line>
<line>ATOM 726 CA GLN A 49 -10.723 4.657 3.976 1.00 0.18 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LEU GLU ALA GLU THR PRO ASN GLN GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 18.53 14.81 15.49 17.77 15.29 13.06 9.92 6.66 3.85 </line>
<line>GLN CA 15.20 11.41 11.77 14.29 12.23 9.82 6.34 3.85 </line>
<line>ASN CA 13.19 9.66 9.66 11.47 9.10 6.45 3.83 </line>
<line>PRO CA 9.95 6.49 5.86 8.08 6.57 3.83 </line>
<line>THR CA 8.72 6.41 5.16 5.45 3.81 </line>
<line>GLU CA 6.05 5.05 5.46 3.82 </line>
<line>ALA CA 4.87 5.25 3.82 </line>
<line>GLU CA 5.64 3.81 </line>
<line>LEU CA 3.83 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>GLY CA 429</line>
<line>GLN CA 499</line>
<line>ASN CA 387</line>
<line>PRO CA 437</line>
<line>THR CA 319</line>
<line>GLU CA 352</line>
<line>ALA CA 301</line>
<line>GLU CA 405</line>
<line>LEU CA 550</line>
<line>GLN CA 425</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2CTN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CTNA</entryIDChain>
<sequence>GQNPTPEELQE</sequence>
<secondary-structure> HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 736 CA GLY A 49 77.606 -6.872 -3.608 1.00 1.87 C </line>
<line>ATOM 743 CA GLN A 50 77.479 -6.548 0.197 1.00 1.17 C </line>
<line>ATOM 760 CA ASN A 51 77.381 -8.792 3.290 1.00 1.29 C </line>
<line>ATOM 774 CA PRO A 52 76.549 -6.834 6.440 1.00 2.11 C </line>
<line>ATOM 788 CA THR A 53 74.875 -8.353 9.521 1.00 1.16 C </line>
<line>ATOM 802 CA PRO A 54 71.330 -8.541 10.885 1.00 1.04 C </line>
<line>ATOM 816 CA GLU A 55 72.313 -6.256 13.791 1.00 1.08 C </line>
<line>ATOM 831 CA GLU A 56 73.857 -3.323 11.882 1.00 0.94 C </line>
<line>ATOM 846 CA LEU A 57 70.909 -3.621 9.466 1.00 0.78 C </line>
<line>ATOM 865 CA GLN A 58 68.301 -2.338 11.952 1.00 0.95 C </line>
<line>ATOM 882 CA GLU A 59 70.650 0.431 13.151 1.00 1.14 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLN LEU GLU GLU PRO THR PRO ASN GLN GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 19.56 18.69 15.04 16.33 18.20 15.88 13.49 10.10 7.16 3.82 </line>
<line>GLN CA 16.22 15.50 11.73 12.65 14.55 12.49 9.85 6.32 3.82 </line>
<line>ASN CA 15.09 14.11 10.33 10.78 11.93 9.71 6.73 3.80 </line>
<line>PRO CA 11.52 10.89 7.16 7.01 8.50 7.06 3.82 </line>
<line>THR CA 10.40 9.24 6.17 5.65 5.40 3.80 </line>
<line>PRO CA 9.28 6.99 5.14 5.88 3.83 </line>
<line>GLU CA 6.92 5.90 5.26 3.83 </line>
<line>GLU CA 5.10 5.64 3.82 </line>
<line>LEU CA 5.48 3.82 </line>
<line>GLN CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>GLY CA 394</line>
<line>GLN CA 459</line>
<line>ASN CA 395</line>
<line>PRO CA 475</line>
<line>THR CA 385</line>
<line>PRO CA 401</line>
<line>GLU CA 333</line>
<line>GLU CA 441</line>
<line>LEU CA 617</line>
<line>GLN CA 514</line>
<line>GLU CA 465</line>
</n14>
</entryChain>
<parallel>
<x>-77.85800170898438</x>
<y>12.99899959564209</y>
<z>2.2290000915527344</z>
</parallel>
<rotation>
<x>0.4309999942779541</x>
<y>0.7260000109672546</y>
<z>0.5360000133514404</z>
<x>0.02199999988079071</x>
<y>0.5849999785423279</y>
<z>-0.8109999895095825</z>
<x>-0.9020000100135803</x>
<y>0.3610000014305115</y>
<z>0.23600000143051147</z>
</rotation>
<rmsd>2.0045509338378906</rmsd>
<dmax>3.0296380519866943</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2CTN</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CTNA</entryIDChain>
<sequence>MIDEV-DEDGS</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 897 CA MET A 60 71.517 1.299 9.530 1.00 1.18 C </line>
<line>ATOM 914 CA ILE A 61 67.941 2.303 8.625 1.00 1.11 C </line>
<line>ATOM 933 CA ASP A 62 67.192 3.589 12.149 1.00 1.43 C </line>
<line>ATOM 945 CA GLU A 63 69.821 6.242 11.330 1.00 1.52 C </line>
<line>ATOM 960 CA VAL A 64 68.482 7.288 7.905 1.00 1.29 C </line>
<line>ATOM 976 CA ASP A 65 64.824 6.418 8.595 1.00 1.38 C </line>
<line>ATOM 988 CA GLU A 66 62.782 9.036 10.491 1.00 3.74 C </line>
<line>ATOM 1003 CA ASP A 67 59.528 7.172 11.233 1.00 3.69 C </line>
<line>ATOM 1015 CA GLY A 68 60.807 4.249 13.337 1.00 3.17 C </line>
<line>ATOM 1022 CA SER A 69 59.490 1.486 11.048 1.00 1.52 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLY ASP GLU ASP VAL GLU ASP ILE MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 12.12 11.74 13.46 11.71 8.48 6.91 5.53 5.55 3.82 </line>
<line>ILE CA 8.83 8.77 10.06 8.69 5.16 5.07 5.13 3.83 </line>
<line>ASP CA 8.06 6.53 8.51 7.20 5.12 5.78 3.82 </line>
<line>GLU CA 11.38 9.45 10.34 7.62 5.70 3.82 </line>
<line>VAL CA 11.15 9.88 9.55 6.50 3.82 </line>
<line>ASP CA 7.67 6.58 5.96 3.82 </line>
<line>GLU CA 8.26 5.91 3.82 </line>
<line>ASP CA 5.69 3.82 </line>
<line>GLY CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>MET CA 636</line>
<line>ILE CA 670</line>
<line>ASP CA 466</line>
<line>GLU CA 471</line>
<line>VAL CA 583</line>
<line>ASP CA 514</line>
<line>GLU CA 341</line>
<line>ASP CA 266</line>
<line>GLY CA 305</line>
<line>SER CA 402</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CFC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CFCA</entryIDChain>
<sequence>DMINEVDADGN</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 743 CA ASP A 50 -10.494 7.560 1.505 1.00 0.23 C </line>
<line>ATOM 755 CA MET A 51 -7.848 5.960 -0.715 1.00 0.34 C </line>
<line>ATOM 772 CA ILE A 52 -9.658 2.627 -0.363 1.00 0.20 C </line>
<line>ATOM 791 CA ASN A 53 -12.899 4.138 -1.689 1.00 0.18 C </line>
<line>ATOM 805 CA GLU A 54 -10.989 5.097 -4.873 1.00 0.34 C </line>
<line>ATOM 820 CA VAL A 55 -8.972 1.872 -5.183 1.00 0.40 C </line>
<line>ATOM 836 CA ASP A 56 -11.976 -0.197 -4.162 1.00 0.22 C </line>
<line>ATOM 848 CA ALA A 57 -13.395 0.681 -7.557 1.00 0.56 C </line>
<line>ATOM 858 CA ASP A 58 -12.944 -2.906 -8.736 1.00 0.25 C </line>
<line>ATOM 870 CA GLY A 59 -14.981 -4.093 -5.736 1.00 0.59 C </line>
<line>ATOM 877 CA ASN A 60 -12.260 -6.684 -4.927 1.00 0.74 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ALA ASP VAL GLU ASN ILE MET ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 15.73 14.43 14.85 11.74 9.72 8.91 6.85 5.26 5.34 3.81 </line>
<line>MET CA 14.04 13.31 13.00 10.27 8.18 6.16 5.28 5.46 3.81 </line>
<line>ILE CA 10.69 10.12 10.56 8.34 5.27 4.93 5.31 3.81 </line>
<line>ASN CA 11.31 9.41 9.96 6.83 5.08 5.72 3.83 </line>
<line>GLU CA 11.85 10.06 9.10 5.70 5.43 3.82 </line>
<line>VAL CA 9.17 8.48 7.16 5.16 3.79 </line>
<line>ASP CA 6.54 5.17 5.40 3.78 </line>
<line>ALA CA 7.90 5.35 3.80 </line>
<line>ASP CA 5.41 3.82 </line>
<line>GLY CA 3.84 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ASP CA 380</line>
<line>MET CA 533</line>
<line>ILE CA 550</line>
<line>ASN CA 374</line>
<line>GLU CA 371</line>
<line>VAL CA 483</line>
<line>ASP CA 402</line>
<line>ALA CA 261</line>
<line>ASP CA 256</line>
<line>GLY CA 249</line>
<line>ASN CA 325</line>
</n14>
</entryChain>
<parallel>
<x>77.78600311279297</x>
<y>2.5480000972747803</y>
<z>13.305999755859375</z>
</parallel>
<rotation>
<x>-0.24300000071525574</x>
<y>-0.7770000100135803</y>
<z>-0.5809999704360962</z>
<x>0.828000009059906</x>
<y>0.1459999978542328</y>
<z>-0.5419999957084656</z>
<x>0.5059999823570251</x>
<y>-0.6119999885559082</y>
<z>0.6079999804496765</z>
</rotation>
<rmsd>1.8536900281906128</rmsd>
<dmax>3.1707630157470703</dmax>
</indel>