NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CFQB-1S5IH
confEVID 1CFQB-1S5IH
pdbIDA 1CFQ
pdbIDB 1S5I
pdbChainA B
pdbChainB H
identity 0.613600015640259
indelSize 2
alignment <alignment>
<seq1>QDQLQQSGAELVRPGASVKLSCKALGYIFTD-YEIHWVKQTPVHGLEWIGGIHPGSSGTAYNQKFKGKATLTADKSSTTAFMELSSLTSEDSAVYYCTRKD------YWGQGTLVTVSAAKTTAPSVYPLVPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRV-</seq1>
<seq2>GVQLQESGPGLVKPSQSLSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYITY-SGSTGYNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCASYDDYTWFTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC</seq2>
<ss_1> EEE EEE EEEEEE - EEEEEEE EEEEEEEE EEEHHHH EEEEEE EEEEEEE GGG EEEEEE ------ EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEEE -</ss_1>
<ss_2> EEEEE EEEEEEEE EEEEEEEEE EEEEEEEEE - EEEEE GGEEEEEEE EEEEEEE GGG EEEEEEE EEE EEEE EEEEE EEEEEEEEEEEEE EEEEEGG EEE EEEEEEEEEE EEEEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CFQ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CFQB</entryIDChain>
<sequence>YIFTD-YEIHW</sequence>
<secondary-structure> - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1867 CA TYR B 27 43.059 8.922 -16.912 1.00 38.58 C </line>
<line>ATOM 1879 CA ILE B 28 42.567 11.646 -19.564 1.00 39.59 C </line>
<line>ATOM 1887 CA PHE B 29 39.384 13.398 -18.488 1.00 41.34 C </line>
<line>ATOM 1898 CA THR B 30 38.106 14.272 -21.992 1.00 45.00 C </line>
<line>ATOM 1905 CA ASP B 31 37.994 10.840 -23.634 1.00 45.68 C </line>
<line>ATOM 1913 CA TYR B 32 35.065 9.258 -21.735 1.00 48.80 C </line>
<line>ATOM 1925 CA GLU B 33 31.675 10.585 -20.620 1.00 44.76 C </line>
<line>ATOM 1934 CA ILE B 34 30.613 10.936 -16.974 1.00 41.42 C </line>
<line>ATOM 1942 CA HIS B 35 27.185 9.680 -15.909 1.00 36.01 C </line>
<line>ATOM 1952 CA TRP B 36 25.203 10.624 -12.786 1.00 31.12 C </line>
</atom-coordinate>
<distance-map>
<line> TRP HIS ILE GLU TYR ASP THR PHE ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 18.41 15.92 12.61 12.09 9.34 8.63 8.89 6.00 3.83 </line>
<line>ILE CA 18.67 15.93 12.25 10.99 8.17 6.17 5.72 3.79 </line>
<line>PHE CA 15.53 13.01 9.23 8.48 6.81 5.91 3.83 </line>
<line>THR CA 16.26 13.32 9.62 7.54 5.87 3.81 </line>
<line>ASP CA 16.77 13.34 9.94 7.01 3.83 </line>
<line>TYR CA 13.39 9.81 6.73 3.81 </line>
<line>GLU CA 10.16 6.57 3.81 </line>
<line>ILE CA 6.85 3.80 </line>
<line>HIS CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 235</line>
<line>ILE CA 234</line>
<line>PHE CA 316</line>
<line>THR CA 256</line>
<line>ASP CA 227</line>
<line>TYR CA 293</line>
<line>GLU CA 366</line>
<line>ILE CA 455</line>
<line>HIS CA 446</line>
<line>TRP CA 492</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1S5I</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1S5IH</entryIDChain>
<sequence>YSITSDYAWNW</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1882 CA TYR H 27 34.961 48.436 24.216 1.00 41.27 C </line>
<line>ATOM 1894 CA SER H 28 33.557 50.304 21.240 1.00 43.37 C </line>
<line>ATOM 1900 CA ILE H 29 29.823 49.882 20.689 1.00 44.41 C </line>
<line>ATOM 1908 CA THR H 30 30.633 50.254 16.961 1.00 47.13 C </line>
<line>ATOM 1915 CA SER H 31 33.141 47.377 16.754 1.00 49.26 C </line>
<line>ATOM 1921 CA ASP H 32 30.993 44.272 17.257 1.00 50.26 C </line>
<line>ATOM 1929 CA TYR H 33 27.900 42.891 19.041 1.00 43.53 C </line>
<line>ATOM 1941 CA ALA H 34 24.340 44.029 19.767 1.00 36.98 C </line>
<line>ATOM 1946 CA TRP H 35 23.635 46.280 22.742 1.00 32.43 C </line>
<line>ATOM 1960 CA ASN H 35A 20.455 45.612 24.705 1.00 27.51 C </line>
<line>ATOM 1968 CA TRP H 36 18.001 47.092 27.189 1.00 29.08 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ASN TRP ALA TYR ASP SER THR ILE SER TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 17.27 14.79 11.62 12.33 10.36 9.03 7.75 8.64 6.40 3.78 </line>
<line>SER CA 16.96 14.34 10.81 11.25 9.58 7.67 5.37 5.18 3.80 </line>
<line>ILE CA 13.78 11.05 7.45 8.07 7.44 6.68 5.72 3.83 </line>
<line>THR CA 16.56 13.61 9.91 9.29 8.12 6.00 3.82 </line>
<line>SER CA 18.39 15.08 11.29 9.89 7.27 3.81 </line>
<line>ASP CA 16.59 12.97 9.39 7.11 3.83 </line>
<line>TYR CA 13.49 9.74 6.59 3.81 </line>
<line>ALA CA 10.23 6.48 3.80 </line>
<line>TRP CA 7.22 3.80 </line>
<line>ASN CA 3.79 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 279</line>
<line>SER CA 281</line>
<line>ILE CA 369</line>
<line>THR CA 261</line>
<line>SER CA 226</line>
<line>ASP CA 278</line>
<line>TYR CA 340</line>
<line>ALA CA 400</line>
<line>TRP CA 493</line>
<line>ASN CA 507</line>
<line>TRP CA 518</line>
</n14>
</entryChain>
<parallel>
<x>7.8480000495910645</x>
<y>-36.029998779296875</y>
<z>-40.33399963378906</z>
</parallel>
<rotation>
<x>0.921999990940094</x>
<y>-0.328000009059906</y>
<z>-0.20399999618530273</z>
<x>0.38100001215934753</x>
<y>0.8619999885559082</y>
<z>0.33500000834465027</z>
<x>0.06599999964237213</x>
<y>-0.3869999945163727</y>
<z>0.9200000166893005</z>
</rotation>
<rmsd>1.5748720169067383</rmsd>
<dmax>2.9616599082946777</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1S5I</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1S5IH</entryIDChain>
<sequence>GYITY-SGSTG</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2088 CA GLY H 49 15.191 45.938 22.291 1.00 29.11 C </line>
<line>ATOM 2092 CA TYR H 50 18.679 46.462 20.891 1.00 33.39 C </line>
<line>ATOM 2104 CA ILE H 51 20.883 48.493 18.575 1.00 35.05 C </line>
<line>ATOM 2112 CA THR H 52 23.683 46.786 16.685 1.00 42.28 C </line>
<line>ATOM 2119 CA TYR H 53 27.223 48.084 16.275 1.00 47.02 C </line>
<line>ATOM 2131 CA SER H 54 25.945 48.916 12.776 1.00 45.77 C </line>
<line>ATOM 2137 CA GLY H 55 23.158 51.242 13.861 1.00 41.45 C </line>
<line>ATOM 2141 CA SER H 56 20.246 48.922 13.177 1.00 38.64 C </line>
<line>ATOM 2147 CA THR H 57 17.665 48.280 15.870 1.00 36.09 C </line>
<line>ATOM 2154 CA GLY H 58 15.280 45.536 16.899 1.00 34.87 C </line>
</atom-coordinate>
<distance-map>
<line> GLY THR SER GLY SER TYR THR ILE TYR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.41 7.27 10.84 12.75 14.66 13.62 10.21 7.26 3.79 </line>
<line>TYR CA 5.32 5.44 8.25 9.61 11.17 9.85 6.54 3.79 </line>
<line>ILE CA 6.55 4.21 5.45 5.91 7.71 6.76 3.78 </line>
<line>THR CA 8.50 6.25 5.36 5.30 4.99 3.79 </line>
<line>TYR CA 12.23 9.57 7.68 5.69 3.82 </line>
<line>SER CA 11.92 8.86 5.71 3.79 </line>
<line>GLY CA 10.19 6.56 3.79 </line>
<line>SER CA 7.07 3.78 </line>
<line>THR CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLY CA 391</line>
<line>TYR CA 429</line>
<line>ILE CA 379</line>
<line>THR CA 336</line>
<line>TYR CA 301</line>
<line>SER CA 214</line>
<line>GLY CA 252</line>
<line>SER CA 227</line>
<line>THR CA 287</line>
<line>GLY CA 280</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CFQ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CFQB</entryIDChain>
<sequence>GGIHPGSSGTA</sequence>
<secondary-structure>EEE E</secondary-structure>
<atom-coordinate>
<line>ATOM 2065 CA GLY B 49 22.232 12.229 -17.406 1.00 38.81 C </line>
<line>ATOM 2069 CA GLY B 50 25.786 12.182 -18.746 1.00 42.70 C </line>
<line>ATOM 2073 CA ILE B 51 28.363 14.741 -19.932 1.00 47.84 C </line>
<line>ATOM 2081 CA HIS B 52 31.304 14.614 -22.313 1.00 52.93 C </line>
<line>ATOM 2091 CA PRO B 53 34.395 16.444 -21.055 1.00 54.74 C </line>
<line>ATOM 2098 CA GLY B 54 35.550 16.349 -24.679 1.00 57.96 C </line>
<line>ATOM 2102 CA SER B 55 32.544 17.426 -26.789 1.00 60.81 C </line>
<line>ATOM 2108 CA SER B 56 30.527 19.090 -23.987 1.00 62.71 C </line>
<line>ATOM 2114 CA GLY B 57 27.400 17.240 -25.116 1.00 62.61 C </line>
<line>ATOM 2118 CA THR B 58 24.891 16.585 -22.364 1.00 62.06 C </line>
<line>ATOM 2125 CA ALA B 59 22.110 14.006 -22.351 1.00 60.28 C </line>
</atom-coordinate>
<distance-map>
<line> ALA THR GLY SER SER GLY PRO HIS ILE GLY GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.26 7.12 10.55 12.62 14.88 15.72 13.38 10.59 7.09 3.80 </line>
<line>GLY CA 5.46 5.77 8.29 9.88 11.74 12.16 9.88 7.01 3.82 </line>
<line>ILE CA 6.74 4.62 5.83 6.33 8.47 8.76 6.37 3.79 </line>
<line>HIS CA 9.21 6.71 5.48 4.84 5.43 5.16 3.81 </line>
<line>PRO CA 12.59 9.59 8.13 5.53 6.10 3.80 </line>
<line>GLY CA 13.84 10.91 8.21 5.76 3.83 </line>
<line>SER CA 11.84 8.88 5.41 3.83 </line>
<line>SER CA 9.97 6.38 3.80 </line>
<line>GLY CA 6.79 3.78 </line>
<line>THR CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 358</line>
<line>GLY CA 394</line>
<line>ILE CA 361</line>
<line>HIS CA 309</line>
<line>PRO CA 304</line>
<line>GLY CA 220</line>
<line>SER CA 167</line>
<line>SER CA 216</line>
<line>GLY CA 204</line>
<line>THR CA 260</line>
<line>ALA CA 255</line>
</n14>
</entryChain>
<parallel>
<x>-7.192999839782715</x>
<y>32.61000061035156</y>
<z>38.73400115966797</z>
</parallel>
<rotation>
<x>0.9959999918937683</x>
<y>-0.08100000023841858</y>
<z>-0.02800000086426735</z>
<x>0.07199999690055847</x>
<y>0.9710000157356262</y>
<z>-0.2290000021457672</z>
<x>0.04600000008940697</x>
<y>0.22599999606609344</y>
<z>0.9729999899864197</z>
</rotation>
<rmsd>0.8278840184211731</rmsd>
<dmax>1.4563239812850952</dmax>
</indel>