NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5A-2ZLWD
confEVID 1CG5A-2ZLWD
pdbIDA 1CG5
pdbIDB 2ZLW
pdbChainA A
pdbChainB D
identity 0.340099990367889
indelSize 3
alignment <alignment>
<seq1>-VLSSQNKKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFSGFE-----ACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKHGENLLVDPHNFHLFADCIVVTLAVNLQ-AFTPVTHCAVDKFLELVAYELSSCYR</seq1>
<seq2>VQLSGEEKAAVLALWDKV--NEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH GGGG ----- HHHHHHHHHHHHHHHHGGG HHHH HHHHHHHH HHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHGGG </ss_1>
<ss_2> HHHHHHHHHH -- HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG5A</entryIDChain>
<sequence>FSGFE-----ACNEQ</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 355 CA PHE A 46 11.119 20.162 -8.524 1.00 14.48 C </line>
<line>ATOM 366 CA SER A 47 13.325 17.413 -9.965 1.00 15.93 C </line>
<line>ATOM 372 CA GLY A 48 14.682 16.585 -6.507 1.00 13.25 C </line>
<line>ATOM 376 CA PHE A 49 14.446 17.499 -2.832 1.00 14.96 C </line>
<line>ATOM 387 CA GLU A 50 18.019 17.204 -1.547 1.00 13.80 C </line>
<line>ATOM 396 CA ALA A 51 20.051 20.177 -0.357 1.00 12.65 C </line>
<line>ATOM 401 CA CYS A 52 22.345 19.350 -3.338 1.00 19.12 C </line>
<line>ATOM 407 CA ASN A 53 19.472 20.109 -5.803 1.00 16.37 C </line>
<line>ATOM 415 CA GLU A 54 19.647 23.383 -7.785 1.00 15.79 C </line>
<line>ATOM 424 CA GLN A 55 15.953 24.230 -7.420 1.00 14.02 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLU ASN CYS ALA GLU PHE GLY SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 6.41 9.15 8.79 12.39 12.10 10.25 7.11 5.44 3.81 </line>
<line>SER CA 7.74 8.96 7.90 11.36 12.05 9.64 7.22 3.81 </line>
<line>GLY CA 7.80 8.51 5.99 8.74 8.92 6.01 3.79 </line>
<line>PHE CA 8.28 9.28 6.40 8.13 6.69 3.81 </line>
<line>GLU CA 9.39 8.93 5.35 5.15 3.79 </line>
<line>ALA CA 9.12 8.10 5.48 3.85 </line>
<line>CYS CA 9.02 6.58 3.86 </line>
<line>ASN CA 5.66 3.83 </line>
<line>GLU CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>PHE CA 212</line>
<line>SER CA 175</line>
<line>GLY CA 226</line>
<line>PHE CA 292</line>
<line>GLU CA 268</line>
<line>ALA CA 299</line>
<line>CYS CA 211</line>
<line>ASN CA 233</line>
<line>GLU CA 217</line>
<line>GLN CA 254</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>FGDLSNPGAVMGNPK</sequence>
<secondary-structure>G HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3615 CA PHE D 45 -27.858 0.821 46.378 1.00 20.57 C </line>
<line>ATOM 3626 CA GLY D 46 -28.380 -2.497 48.171 1.00 21.29 C </line>
<line>ATOM 3630 CA ASP D 47 -29.141 -5.668 46.165 1.00 29.86 C </line>
<line>ATOM 3638 CA LEU D 48 -27.704 -5.763 42.624 1.00 16.24 C </line>
<line>ATOM 3646 CA SER D 49 -27.448 -9.565 42.377 1.00 24.16 C </line>
<line>ATOM 3652 CA ASN D 50 -29.616 -10.625 39.438 1.00 41.54 C </line>
<line>ATOM 3660 CA PRO D 51 -31.076 -8.686 36.440 1.00 34.87 C </line>
<line>ATOM 3667 CA GLY D 52 -34.703 -8.259 37.615 1.00 29.21 C </line>
<line>ATOM 3671 CA ALA D 53 -33.702 -7.001 41.054 1.00 25.43 C </line>
<line>ATOM 3676 CA VAL D 54 -31.347 -4.365 39.528 1.00 25.94 C </line>
<line>ATOM 3683 CA MET D 55 -33.964 -2.754 37.187 1.00 29.82 C </line>
<line>ATOM 3691 CA GLY D 56 -36.655 -2.681 39.881 1.00 24.63 C </line>
<line>ATOM 3695 CA ASN D 57 -34.073 -1.079 42.204 1.00 26.57 C </line>
<line>ATOM 3703 CA PRO D 58 -35.338 2.411 43.238 1.00 16.40 C </line>
<line>ATOM 3710 CA LYS D 59 -31.796 3.656 43.733 1.00 33.64 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA GLY PRO ASN SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.53 8.27 7.72 11.48 11.60 9.27 11.12 14.36 14.12 13.50 11.14 7.58 6.62 3.81 </line>
<line>GLY CA 8.32 9.84 8.37 11.71 12.32 9.33 9.96 13.59 13.53 11.99 9.19 6.47 3.83 </line>
<line>ASP CA 10.00 10.59 7.81 10.24 10.60 7.11 6.98 10.52 10.36 8.37 5.69 3.82 </line>
<line>LEU CA 10.33 11.20 7.92 9.86 8.82 4.98 6.32 8.96 7.63 6.12 3.82 </line>
<line>SER CA 13.98 14.37 10.77 11.76 10.76 7.10 6.89 8.78 7.01 3.80 </line>
<line>ASN CA 15.07 14.73 10.89 10.62 9.27 6.50 5.70 5.90 3.86 </line>
<line>PRO CA 14.35 13.69 10.00 8.89 6.64 5.32 5.57 3.84 </line>
<line>GLY CA 13.71 12.08 8.54 6.33 5.57 5.49 3.80 </line>
<line>ALA CA 11.15 9.80 6.04 5.36 5.75 3.85 </line>
<line>VAL CA 9.07 8.70 5.04 5.58 3.86 </line>
<line>MET CA 9.41 8.07 5.29 3.81 </line>
<line>GLY CA 8.87 6.24 3.82 </line>
<line>ASN CA 5.47 3.85 </line>
<line>PRO CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 225</line>
<line>GLY CA 186</line>
<line>ASP CA 194</line>
<line>LEU CA 255</line>
<line>SER CA 192</line>
<line>ASN CA 165</line>
<line>PRO CA 213</line>
<line>GLY CA 173</line>
<line>ALA CA 191</line>
<line>VAL CA 286</line>
<line>MET CA 285</line>
<line>GLY CA 230</line>
<line>ASN CA 256</line>
<line>PRO CA 220</line>
<line>LYS CA 253</line>
</n14>
</entryChain>
<parallel>
<x>47.334999084472656</x>
<y>22.211000442504883</y>
<z>-47.981998443603516</z>
</parallel>
<rotation>
<x>-0.9589999914169312</x>
<y>0.006000000052154064</y>
<z>0.2840000092983246</z>
<x>-0.11999999731779099</x>
<y>0.8980000019073486</y>
<z>-0.42399999499320984</z>
<x>-0.257999986410141</x>
<y>-0.4399999976158142</y>
<z>-0.8600000143051147</z>
</rotation>
<rmsd>2.3000340461730957</rmsd>
<dmax>5.084715843200684</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG5A</entryIDChain>
<sequence>AVNLQ-AFTPV</sequence>
<secondary-structure>HHH - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 874 CA ALA A 111 22.783 24.738 15.379 1.00 11.41 C </line>
<line>ATOM 879 CA VAL A 112 24.668 22.711 12.745 1.00 12.59 C </line>
<line>ATOM 886 CA ASN A 113 26.377 25.743 11.200 1.00 16.93 C </line>
<line>ATOM 894 CA LEU A 114 26.987 28.293 13.964 1.00 19.07 C </line>
<line>ATOM 902 CA GLN A 115 30.151 28.053 16.083 1.00 25.09 C </line>
<line>ATOM 911 CA ALA A 116 28.078 28.536 19.272 1.00 18.36 C </line>
<line>ATOM 916 CA PHE A 117 24.305 28.433 19.853 1.00 11.33 C </line>
<line>ATOM 927 CA THR A 118 23.524 28.885 23.555 1.00 12.89 C </line>
<line>ATOM 934 CA PRO A 119 19.984 28.626 25.024 1.00 9.69 C </line>
<line>ATOM 941 CA VAL A 120 19.731 32.425 25.371 1.00 10.84 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO THR PHE ALA GLN LEU ASN VAL ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.97 10.77 9.20 6.00 7.59 8.11 5.68 5.60 3.82 </line>
<line>VAL CA 16.68 14.41 12.50 9.13 9.39 8.35 6.17 3.81 </line>
<line>ASN CA 17.02 15.50 13.06 9.30 8.71 6.59 3.81 </line>
<line>LEU CA 14.14 13.09 10.21 6.47 5.42 3.82 </line>
<line>GLN CA 14.63 13.55 10.02 6.97 3.83 </line>
<line>ALA CA 11.05 9.93 6.26 3.82 </line>
<line>PHE CA 8.20 6.74 3.81 </line>
<line>THR CA 5.50 3.84 </line>
<line>PRO CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 260</line>
<line>VAL CA 221</line>
<line>ASN CA 235</line>
<line>LEU CA 242</line>
<line>GLN CA 147</line>
<line>ALA CA 169</line>
<line>PHE CA 211</line>
<line>THR CA 168</line>
<line>PRO CA 160</line>
<line>VAL CA 188</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>ARHFGKDFTPE</sequence>
<secondary-structure>HHHHGGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 4142 CA ALA D 115 -32.549 2.154 19.812 1.00 13.93 C </line>
<line>ATOM 4147 CA ARG D 116 -34.833 -0.147 21.767 1.00 18.29 C </line>
<line>ATOM 4158 CA HIS D 117 -37.236 2.706 22.583 1.00 18.46 C </line>
<line>ATOM 4168 CA PHE D 118 -37.472 4.394 19.173 1.00 18.14 C </line>
<line>ATOM 4179 CA GLY D 119 -36.998 1.425 16.871 1.00 13.31 C </line>
<line>ATOM 4183 CA LYS D 120 -36.803 2.374 13.213 1.00 16.02 C </line>
<line>ATOM 4192 CA ASP D 121 -36.902 6.089 13.964 1.00 30.26 C </line>
<line>ATOM 4200 CA PHE D 122 -33.504 5.691 15.521 1.00 15.79 C </line>
<line>ATOM 4211 CA THR D 123 -32.193 5.421 11.974 1.00 21.39 C </line>
<line>ATOM 4218 CA PRO D 124 -28.585 4.661 11.134 1.00 15.99 C </line>
<line>ATOM 4225 CA GLU D 125 -28.100 8.353 10.285 1.00 23.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO THR PHE ASP LYS GLY PHE HIS ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.21 9.86 8.50 5.64 8.28 7.85 5.38 5.45 5.47 3.79 </line>
<line>ARG CA 15.79 13.24 11.57 8.65 10.20 9.13 5.58 5.86 3.82 </line>
<line>HIS CA 16.33 14.48 12.06 8.53 9.27 9.39 5.86 3.81 </line>
<line>PHE CA 13.51 11.99 8.99 5.55 5.51 6.33 3.79 </line>
<line>GLY CA 13.06 10.68 7.94 5.68 5.50 3.78 </line>
<line>LYS CA 10.96 8.78 5.66 5.22 3.79 </line>
<line>ASP CA 9.80 8.90 5.16 3.76 </line>
<line>PHE CA 7.98 6.67 3.79 </line>
<line>THR CA 5.31 3.78 </line>
<line>PRO CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ALA CA 292</line>
<line>ARG CA 248</line>
<line>HIS CA 259</line>
<line>PHE CA 257</line>
<line>GLY CA 189</line>
<line>LYS CA 155</line>
<line>ASP CA 202</line>
<line>PHE CA 264</line>
<line>THR CA 208</line>
<line>PRO CA 187</line>
<line>GLU CA 210</line>
</n14>
</entryChain>
<parallel>
<x>61.06999969482422</x>
<y>23.457000732421875</y>
<z>-1.2020000219345093</z>
</parallel>
<rotation>
<x>-0.8659999966621399</x>
<y>-0.3400000035762787</y>
<z>0.3659999966621399</z>
<x>-0.35600000619888306</x>
<y>0.9340000152587891</y>
<z>0.023000000044703484</z>
<x>-0.3499999940395355</x>
<y>-0.11100000143051147</y>
<z>-0.9300000071525574</z>
</rotation>
<rmsd>1.4040420055389404</rmsd>
<dmax>2.9459660053253174</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>LWDKV--NEEEV</sequence>
<secondary-structure>H -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3356 CA LEU D 14 -35.699 13.034 19.487 1.00 17.31 C </line>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU GLU GLU ASN VAL LYS ASP TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.60 14.60 15.52 12.19 10.17 6.46 5.35 5.31 3.83 </line>
<line>TRP CA 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.30 5.54 3.81 </line>
<line>GLU CA 5.65 3.79 </line>
<line>GLU CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 322</line>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG5A</entryIDChain>
<sequence>LGNLIKANAEAW</sequence>
<secondary-structure>HHHHHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 95 CA LEU A 13 22.214 36.784 13.109 1.00 18.58 C </line>
<line>ATOM 103 CA GLY A 14 20.632 38.467 10.089 1.00 15.78 C </line>
<line>ATOM 107 CA ASN A 15 24.128 39.366 8.878 1.00 18.48 C </line>
<line>ATOM 115 CA LEU A 16 25.266 35.717 9.051 1.00 16.34 C </line>
<line>ATOM 123 CA ILE A 17 22.098 34.520 7.324 1.00 15.94 C </line>
<line>ATOM 131 CA LYS A 18 22.657 36.961 4.441 1.00 18.32 C </line>
<line>ATOM 140 CA ALA A 19 26.250 35.726 4.033 1.00 16.95 C </line>
<line>ATOM 145 CA ASN A 20 25.176 32.061 3.944 1.00 15.35 C </line>
<line>ATOM 153 CA ALA A 21 21.678 32.391 2.398 1.00 11.61 C </line>
<line>ATOM 158 CA GLU A 22 21.927 29.664 -0.266 1.00 13.09 C </line>
<line>ATOM 167 CA ALA A 23 23.619 26.922 1.798 1.00 11.09 C </line>
<line>ATOM 172 CA TRP A 24 21.581 27.444 4.978 1.00 9.95 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLU ALA ASN ALA LYS ILE LEU ASN GLY LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.40 15.07 15.15 11.59 10.73 9.99 8.68 6.21 5.19 5.31 3.80 </line>
<line>GLY CA 12.19 14.52 13.65 9.86 9.97 8.70 6.19 5.04 5.49 3.81 </line>
<line>ASN CA 12.80 14.33 13.51 9.83 8.88 6.42 5.26 5.48 3.83 </line>
<line>LEU CA 9.93 11.52 11.60 8.26 6.28 5.11 5.44 3.80 </line>
<line>ILE CA 7.47 9.52 9.01 5.38 5.19 5.43 3.82 </line>
<line>LYS CA 9.59 10.43 8.71 5.10 5.53 3.82 </line>
<line>ALA CA 9.55 9.46 8.60 5.89 3.82 </line>
<line>ASN CA 5.94 5.78 5.83 3.84 </line>
<line>ALA CA 5.58 5.83 3.82 </line>
<line>GLU CA 5.71 3.83 </line>
<line>ALA CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>LEU CA 374</line>
<line>GLY CA 347</line>
<line>ASN CA 249</line>
<line>LEU CA 299</line>
<line>ILE CA 360</line>
<line>LYS CA 269</line>
<line>ALA CA 223</line>
<line>ASN CA 278</line>
<line>ALA CA 315</line>
<line>GLU CA 303</line>
<line>ALA CA 319</line>
<line>TRP CA 378</line>
</n14>
</entryChain>
<parallel>
<x>-59.77399826049805</x>
<y>-22.902000427246094</y>
<z>19.312999725341797</z>
</parallel>
<rotation>
<x>-0.996999979019165</x>
<y>-0.04699999839067459</y>
<z>-0.06400000303983688</z>
<x>-0.032999999821186066</x>
<y>0.9789999723434448</y>
<z>-0.2029999941587448</z>
<x>0.0729999989271164</x>
<y>-0.20000000298023224</y>
<z>-0.9769999980926514</z>
</rotation>
<rmsd>0.6883509755134583</rmsd>
<dmax>1.173454999923706</dmax>
</indel>