NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-1HBRB
confEVID 1CG5B-1HBRB
pdbIDA 1CG5
pdbIDB 1HBR
pdbChainA B
pdbChainB B
identity 0.347200006246567
indelSize 2
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFSA----NDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>VHWTAEEKQLITGLWGKVNVAECGAEALARLLIVYPWTQRFFASFGNLSSPTAILGNPMVRAHGKKVLTSFGDAVKNLDNIKNTFSQLSELHCDKLHVDPENFRLLGDILIIVLAAHFSKDFTPECQAAWQKLVRVVAHALARK--</seq2>
<ss_1> HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGG ---- HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG HHHHHHHHHHHHHHH GGGGGGGG HHHH HHHHHHHHHHHHHHHHHH HHHH HHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GLFSA----NDIGV</sequence>
<secondary-structure> ---- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
<line>ATOM 1554 CA ASP B 53 23.404 22.661 38.409 1.00 17.12 C </line>
<line>ATOM 1562 CA ILE B 54 22.833 19.829 40.908 1.00 17.79 C </line>
<line>ATOM 1570 CA GLY B 55 19.041 19.766 40.492 1.00 15.22 C </line>
<line>ATOM 1574 CA VAL B 56 19.202 19.570 36.700 1.00 13.26 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLY ILE ASP ASN ALA SER PHE LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 10.67 10.05 11.76 10.04 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 8.01 7.64 8.51 6.29 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 6.43 7.91 9.18 6.51 8.36 6.66 3.83 </line>
<line>SER CA 6.86 8.94 8.71 5.18 5.36 3.81 </line>
<line>ALA CA 5.94 8.91 8.30 5.63 3.80 </line>
<line>ASN CA 6.97 8.53 6.33 3.81 </line>
<line>ASP CA 5.49 5.64 3.82 </line>
<line>ILE CA 5.56 3.82 </line>
<line>GLY CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
<line>ASP CA 235</line>
<line>ILE CA 224</line>
<line>GLY CA 259</line>
<line>VAL CA 324</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HBR</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1HBRB</entryIDChain>
<sequence>NLSSPTAILGNPMV</sequence>
<secondary-structure> HHHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1417 CA ASN B 47 10.896 27.525 26.218 1.00 47.38 C </line>
<line>ATOM 1425 CA LEU B 48 10.898 24.383 24.096 1.00 24.54 C </line>
<line>ATOM 1433 CA SER B 49 7.143 24.324 23.526 1.00 49.21 C </line>
<line>ATOM 1439 CA SER B 50 7.324 24.611 19.754 1.00 51.35 C </line>
<line>ATOM 1445 CA PRO B 51 9.852 24.136 16.941 1.00 35.26 C </line>
<line>ATOM 1452 CA THR B 52 9.683 27.914 16.674 1.00 57.89 C </line>
<line>ATOM 1459 CA ALA B 53 10.511 28.454 20.358 1.00 33.92 C </line>
<line>ATOM 1464 CA ILE B 54 13.233 25.807 20.156 1.00 32.45 C </line>
<line>ATOM 1472 CA LEU B 55 14.808 27.323 17.022 1.00 49.76 C </line>
<line>ATOM 1480 CA GLY B 56 14.818 30.777 18.567 1.00 45.66 C </line>
<line>ATOM 1484 CA ASN B 57 15.909 29.621 22.016 1.00 11.64 C </line>
<line>ATOM 1492 CA PRO B 58 19.295 31.268 22.832 1.00 27.11 C </line>
<line>ATOM 1499 CA MET B 59 20.530 28.359 24.922 1.00 29.25 C </line>
<line>ATOM 1507 CA VAL B 60 19.693 25.725 22.317 1.00 14.47 C </line>
</atom-coordinate>
<distance-map>
<line> VAL MET PRO ASN GLY LEU ILE ALA THR PRO SER SER LEU ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 9.79 9.76 9.80 6.87 9.19 10.00 6.72 5.95 9.63 9.93 7.94 5.62 3.79 </line>
<line>LEU CA 9.07 10.45 10.93 7.54 9.32 8.60 4.80 5.54 8.31 7.24 5.63 3.80 </line>
<line>SER CA 12.69 14.05 14.01 10.35 11.19 10.49 7.12 6.20 8.14 7.12 3.79 </line>
<line>SER CA 12.68 14.67 14.04 10.19 9.78 8.42 6.04 5.03 5.10 3.81 </line>
<line>PRO CA 11.33 13.98 13.22 9.62 8.45 5.89 4.96 5.55 3.79 </line>
<line>THR CA 11.70 13.63 11.90 8.38 6.18 5.17 5.40 3.81 </line>
<line>ALA CA 9.78 11.01 9.55 5.77 5.21 5.56 3.80 </line>
<line>ILE CA 6.81 9.08 8.59 5.02 5.45 3.82 </line>
<line>LEU CA 7.38 9.81 8.33 5.61 3.78 </line>
<line>GLY CA 7.96 8.88 6.20 3.80 </line>
<line>ASN CA 5.44 5.60 3.85 </line>
<line>PRO CA 5.58 3.79 </line>
<line>MET CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 198</line>
<line>LEU CA 254</line>
<line>SER CA 193</line>
<line>SER CA 183</line>
<line>PRO CA 227</line>
<line>THR CA 181</line>
<line>ALA CA 202</line>
<line>ILE CA 295</line>
<line>LEU CA 275</line>
<line>GLY CA 227</line>
<line>ASN CA 255</line>
<line>PRO CA 226</line>
<line>MET CA 252</line>
<line>VAL CA 332</line>
</n14>
</entryChain>
<parallel>
<x>9.345999717712402</x>
<y>-2.884999990463257</y>
<z>15.251999855041504</z>
</parallel>
<rotation>
<x>-0.02500000037252903</x>
<y>-0.8650000095367432</y>
<z>0.5009999871253967</z>
<x>0.8240000009536743</x>
<y>0.26600000262260437</y>
<z>0.5009999871253967</z>
<x>-0.5669999718666077</x>
<y>0.42500001192092896</y>
<z>0.7059999704360962</z>
</rotation>
<rmsd>2.9295380115509033</rmsd>
<dmax>3.877707004547119</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HBR</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1HBRB</entryIDChain>
<sequence>ELHCDKLHVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1724 CA GLU B 90 31.374 10.453 32.409 1.00 32.61 C </line>
<line>ATOM 1733 CA LEU B 91 29.122 13.504 32.123 1.00 26.93 C </line>
<line>ATOM 1741 CA HIS B 92 26.615 11.999 29.686 1.00 26.66 C </line>
<line>ATOM 1751 CA CYS B 93 26.633 8.569 31.291 1.00 43.24 C </line>
<line>ATOM 1757 CA ASP B 94 27.273 9.006 34.993 1.00 38.26 C </line>
<line>ATOM 1765 CA LYS B 95 26.015 12.497 35.715 1.00 35.98 C </line>
<line>ATOM 1774 CA LEU B 96 23.268 12.676 33.088 1.00 10.98 C </line>
<line>ATOM 1782 CA HIS B 97 22.181 9.110 32.244 1.00 17.33 C </line>
<line>ATOM 1792 CA VAL B 98 21.679 9.830 28.525 1.00 31.47 C </line>
<line>ATOM 1799 CA ASP B 99 20.807 6.526 26.849 1.00 8.66 C </line>
<line>ATOM 1807 CA PRO B 100 23.407 5.795 24.103 1.00 9.44 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL HIS LEU LYS ASP CYS HIS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.42 12.57 10.46 9.29 8.43 6.62 5.06 5.22 5.70 3.80 </line>
<line>LEU CA 12.51 12.07 9.05 8.22 5.99 4.85 5.65 5.59 3.81 </line>
<line>HIS CA 8.94 8.47 5.52 5.88 4.82 6.08 6.13 3.79 </line>
<line>CYS CA 8.35 7.61 5.81 4.58 5.61 5.95 3.78 </line>
<line>ASP CA 11.99 10.69 8.59 5.79 5.76 3.78 </line>
<line>LYS CA 13.66 11.89 8.81 6.18 3.81 </line>
<line>LEU CA 11.32 9.10 5.61 3.82 </line>
<line>HIS CA 8.88 6.14 3.82 </line>
<line>VAL CA 6.23 3.81 </line>
<line>ASP CA 3.85 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 188</line>
<line>LEU CA 213</line>
<line>HIS CA 279</line>
<line>CYS CA 211</line>
<line>ASP CA 159</line>
<line>LYS CA 163</line>
<line>LEU CA 218</line>
<line>HIS CA 211</line>
<line>VAL CA 289</line>
<line>ASP CA 263</line>
<line>PRO CA 288</line>
</n14>
</entryChain>
<parallel>
<x>-24.40999984741211</x>
<y>1.9559999704360962</y>
<z>4.408999919891357</z>
</parallel>
<rotation>
<x>-0.20600000023841858</x>
<y>-0.953000009059906</y>
<z>-0.2240000069141388</z>
<x>0.8939999938011169</x>
<y>-0.2759999930858612</y>
<z>0.3529999852180481</z>
<x>-0.39800000190734863</x>
<y>-0.12700000405311584</y>
<z>0.9079999923706055</z>
</rotation>
<rmsd>0.7372210025787354</rmsd>
<dmax>1.4664369821548462</dmax>
</indel>