NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-1LJWB
confEVID 1CG5B-1LJWB
pdbIDA 1CG5
pdbIDB 1LJW
pdbChainA B
pdbChainB B
identity 0.328799992799759
indelSize 2
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFS----ANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1> HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGG ---- HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG HHHHHHHHHHHH GGGGGGGG HHHH HHHHHHHHHHHHHHHHHGGGGGGHHHH HHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>QGLFS----ANDIG</sequence>
<secondary-structure> ---- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1503 CA GLN B 46 15.341 27.535 42.949 1.00 14.60 C </line>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
<line>ATOM 1554 CA ASP B 53 23.404 22.661 38.409 1.00 17.12 C </line>
<line>ATOM 1562 CA ILE B 54 22.833 19.829 40.908 1.00 17.79 C </line>
<line>ATOM 1570 CA GLY B 55 19.041 19.766 40.492 1.00 15.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ILE ASP ASN ALA SER PHE LEU GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 8.95 10.94 10.46 14.05 13.99 11.35 8.32 5.50 3.81 </line>
<line>GLY CA 10.05 11.76 10.04 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 7.64 8.51 6.29 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 7.91 9.18 6.51 8.36 6.66 3.83 </line>
<line>SER CA 8.94 8.71 5.18 5.36 3.81 </line>
<line>ALA CA 8.91 8.30 5.63 3.80 </line>
<line>ASN CA 8.53 6.33 3.81 </line>
<line>ASP CA 5.64 3.82 </line>
<line>ILE CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLN CA 159</line>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
<line>ASP CA 235</line>
<line>ILE CA 224</line>
<line>GLY CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LJW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LJWB</entryIDChain>
<sequence>GDLSTPDAVMGNPK</sequence>
<secondary-structure> HHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1445 CA GLY B 46 50.909 44.651 45.591 1.00 41.58 C </line>
<line>ATOM 1449 CA ASP B 47 52.668 42.064 47.703 1.00 39.15 C </line>
<line>ATOM 1457 CA LEU B 48 50.386 39.208 48.766 1.00 35.53 C </line>
<line>ATOM 1465 CA SER B 49 53.091 36.548 48.521 1.00 41.90 C </line>
<line>ATOM 1471 CA THR B 50 52.854 35.590 52.194 1.00 39.23 C </line>
<line>ATOM 1478 CA PRO B 51 50.293 35.912 54.992 1.00 32.04 C </line>
<line>ATOM 1485 CA ASP B 52 52.587 38.391 56.746 1.00 38.03 C </line>
<line>ATOM 1493 CA ALA B 53 52.856 40.388 53.535 1.00 34.11 C </line>
<line>ATOM 1498 CA VAL B 54 49.064 40.174 53.156 1.00 37.90 C </line>
<line>ATOM 1505 CA MET B 55 48.230 41.220 56.709 1.00 32.28 C </line>
<line>ATOM 1513 CA GLY B 56 50.700 44.100 56.705 1.00 37.45 C </line>
<line>ATOM 1517 CA ASN B 57 49.753 45.345 53.244 1.00 41.18 C </line>
<line>ATOM 1525 CA PRO B 58 48.524 49.007 53.520 1.00 38.16 C </line>
<line>ATOM 1532 CA LYS B 59 46.072 48.636 50.645 1.00 43.84 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 8.05 9.36 7.77 11.13 11.94 8.98 9.22 12.90 12.85 11.38 8.89 6.32 3.77 </line>
<line>ASP CA 9.76 9.96 7.07 9.44 10.08 6.80 6.07 9.76 9.83 7.88 5.59 3.81 </line>
<line>LEU CA 10.54 11.05 7.62 9.33 8.47 4.69 5.50 8.32 7.05 5.56 3.80 </line>
<line>SER CA 14.14 14.18 10.53 11.39 10.61 7.13 6.32 8.44 7.08 3.80 </line>
<line>THR CA 14.78 14.16 10.29 9.87 8.57 6.03 4.98 5.35 3.81 </line>
<line>PRO CA 14.09 13.30 9.61 8.38 5.95 4.80 5.36 3.81 </line>
<line>ASP CA 13.59 11.82 8.29 6.01 5.20 5.34 3.79 </line>
<line>ALA CA 11.06 9.65 5.86 5.34 5.67 3.82 </line>
<line>VAL CA 9.32 8.86 5.22 5.54 3.80 </line>
<line>MET CA 9.82 8.42 5.60 3.79 </line>
<line>GLY CA 8.87 6.24 3.80 </line>
<line>ASN CA 5.58 3.87 </line>
<line>PRO CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLY CA 200</line>
<line>ASP CA 204</line>
<line>LEU CA 255</line>
<line>SER CA 190</line>
<line>THR CA 172</line>
<line>PRO CA 226</line>
<line>ASP CA 181</line>
<line>ALA CA 206</line>
<line>VAL CA 295</line>
<line>MET CA 286</line>
<line>GLY CA 229</line>
<line>ASN CA 256</line>
<line>PRO CA 231</line>
<line>LYS CA 256</line>
</n14>
</entryChain>
<parallel>
<x>-30.648000717163086</x>
<y>-15.932000160217285</y>
<z>-13.928999900817871</z>
</parallel>
<rotation>
<x>0.44999998807907104</x>
<y>0.8920000195503235</y>
<z>0.04699999839067459</z>
<x>0.38499999046325684</x>
<y>-0.2409999966621399</y>
<z>0.890999972820282</z>
<x>0.8059999942779541</x>
<y>-0.382999986410141</y>
<z>-0.4519999921321869</z>
</rotation>
<rmsd>2.8510138988494873</rmsd>
<dmax>3.9025371074676514</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LJW</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1LJWB</entryIDChain>
<sequence>ELHCDKLHVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1759 CA GLU B 90 25.835 46.187 41.102 1.00 37.19 C </line>
<line>ATOM 1768 CA LEU B 91 29.538 46.762 41.643 1.00 35.11 C </line>
<line>ATOM 1776 CA HIS B 92 30.217 43.282 43.048 1.00 31.45 C </line>
<line>ATOM 1786 CA CYS B 93 27.877 41.373 40.789 1.00 31.78 C </line>
<line>ATOM 1792 CA ASP B 94 27.543 43.323 37.526 1.00 38.80 C </line>
<line>ATOM 1800 CA LYS B 95 30.977 44.779 37.358 1.00 37.88 C </line>
<line>ATOM 1809 CA LEU B 96 33.307 42.519 39.269 1.00 31.75 C </line>
<line>ATOM 1817 CA HIS B 97 31.346 39.266 38.807 1.00 32.48 C </line>
<line>ATOM 1827 CA VAL B 98 32.408 38.020 42.245 1.00 31.62 C </line>
<line>ATOM 1834 CA ASP B 99 30.788 34.680 42.926 1.00 24.94 C </line>
<line>ATOM 1842 CA PRO B 100 28.332 35.133 45.876 1.00 24.54 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL HIS LEU LYS ASP CYS HIS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.30 12.66 10.55 9.14 8.52 6.51 4.89 5.24 5.61 3.79 </line>
<line>LEU CA 12.43 12.21 9.22 8.22 6.15 4.94 5.72 5.70 3.81 </line>
<line>HIS CA 8.83 8.62 5.76 5.95 4.94 5.93 6.14 3.77 </line>
<line>CYS CA 8.06 7.61 5.82 4.52 5.75 5.74 3.82 </line>
<line>ASP CA 11.72 10.70 8.61 5.71 6.08 3.73 </line>
<line>LYS CA 13.14 11.53 8.46 5.71 3.77 </line>
<line>LEU CA 11.09 9.01 5.47 3.83 </line>
<line>HIS CA 8.73 6.19 3.81 </line>
<line>VAL CA 6.18 3.77 </line>
<line>ASP CA 3.87 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 229</line>
<line>LEU CA 244</line>
<line>HIS CA 324</line>
<line>CYS CA 261</line>
<line>ASP CA 195</line>
<line>LYS CA 184</line>
<line>LEU CA 243</line>
<line>HIS CA 239</line>
<line>VAL CA 319</line>
<line>ASP CA 290</line>
<line>PRO CA 327</line>
</n14>
</entryChain>
<parallel>
<x>-28.150999069213867</x>
<y>-29.993000030517578</y>
<z>-4.349999904632568</z>
</parallel>
<rotation>
<x>0.7760000228881836</x>
<y>0.48899999260902405</y>
<z>0.39800000190734863</z>
<x>0.33500000834465027</x>
<y>-0.8550000190734863</y>
<z>0.3970000147819519</z>
<x>0.5339999794960022</x>
<y>-0.17499999701976776</y>
<z>-0.8270000219345093</z>
</rotation>
<rmsd>0.8387680053710938</rmsd>
<dmax>1.6086080074310303</dmax>
</indel>