NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-1NIHB
confEVID 1CG5B-1NIHB
pdbIDA 1CG5
pdbIDB 1NIH
pdbChainA B
pdbChainB B
identity 0.328799992799759
indelSize 2
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFS----ANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1> HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGG ---- HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHGGG HHHHHHHHHHHHHHH GGGG HHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>QGLFS----ANDIG</sequence>
<secondary-structure> ---- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1503 CA GLN B 46 15.341 27.535 42.949 1.00 14.60 C </line>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
<line>ATOM 1554 CA ASP B 53 23.404 22.661 38.409 1.00 17.12 C </line>
<line>ATOM 1562 CA ILE B 54 22.833 19.829 40.908 1.00 17.79 C </line>
<line>ATOM 1570 CA GLY B 55 19.041 19.766 40.492 1.00 15.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ILE ASP ASN ALA SER PHE LEU GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 8.95 10.94 10.46 14.05 13.99 11.35 8.32 5.50 3.81 </line>
<line>GLY CA 10.05 11.76 10.04 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 7.64 8.51 6.29 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 7.91 9.18 6.51 8.36 6.66 3.83 </line>
<line>SER CA 8.94 8.71 5.18 5.36 3.81 </line>
<line>ALA CA 8.91 8.30 5.63 3.80 </line>
<line>ASN CA 8.53 6.33 3.81 </line>
<line>ASP CA 5.64 3.82 </line>
<line>ILE CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLN CA 159</line>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
<line>ASP CA 235</line>
<line>ILE CA 224</line>
<line>GLY CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1NIH</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1NIHB</entryIDChain>
<sequence>GDLSTPDAVMGNPK</sequence>
<secondary-structure> HHHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1432 CA GLY B 46 2.653 7.330 40.795 1.00 35.46 C </line>
<line>ATOM 1436 CA ASP B 47 1.532 3.935 39.563 1.00 15.28 C </line>
<line>ATOM 1444 CA LEU B 48 2.755 3.652 35.965 1.00 42.31 C </line>
<line>ATOM 1452 CA SER B 49 3.672 -0.193 36.150 1.00 59.17 C </line>
<line>ATOM 1458 CA THR B 50 0.755 -1.793 33.751 1.00 38.16 C </line>
<line>ATOM 1465 CA PRO B 51 -1.405 -0.266 30.906 1.00 10.62 C </line>
<line>ATOM 1472 CA ASP B 52 -4.274 0.052 33.141 1.00 15.17 C </line>
<line>ATOM 1480 CA ALA B 53 -2.247 1.736 35.915 1.00 27.32 C </line>
<line>ATOM 1485 CA VAL B 54 -0.974 4.342 33.413 1.00 27.59 C </line>
<line>ATOM 1492 CA MET B 55 -4.535 4.678 31.891 1.00 18.02 C </line>
<line>ATOM 1500 CA GLY B 56 -6.375 5.075 35.297 1.00 36.38 C </line>
<line>ATOM 1504 CA ASN B 57 -3.753 7.399 36.853 1.00 14.94 C </line>
<line>ATOM 1512 CA PRO B 58 -5.513 10.781 37.459 1.00 24.64 C </line>
<line>ATOM 1519 CA LYS B 59 -2.185 12.587 37.353 1.00 15.02 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 7.93 9.47 7.52 10.81 11.75 8.75 8.89 12.63 13.11 11.68 8.90 6.07 3.78 </line>
<line>ASP CA 9.67 10.05 6.88 9.06 9.81 6.65 5.69 9.49 10.06 8.20 5.77 3.81 </line>
<line>LEU CA 10.30 11.02 7.56 9.26 8.41 4.57 5.36 8.39 7.63 6.21 3.96 </line>
<line>SER CA 14.11 14.37 10.64 11.38 10.45 7.05 6.23 8.50 7.30 4.10 </line>
<line>THR CA 15.11 14.53 10.70 10.02 8.56 6.38 5.11 5.39 3.88 </line>
<line>PRO CA 14.40 13.49 9.98 8.52 5.93 5.26 5.46 3.65 </line>
<line>ASP CA 13.39 11.63 8.25 5.86 4.80 5.42 3.83 </line>
<line>ALA CA 10.95 9.74 5.93 5.35 5.48 3.83 </line>
<line>VAL CA 9.22 8.86 5.38 5.77 3.89 </line>
<line>MET CA 9.89 8.32 5.71 3.89 </line>
<line>GLY CA 8.84 6.16 3.83 </line>
<line>ASN CA 5.44 3.86 </line>
<line>PRO CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLY CA 197</line>
<line>ASP CA 201</line>
<line>LEU CA 255</line>
<line>SER CA 193</line>
<line>THR CA 164</line>
<line>PRO CA 210</line>
<line>ASP CA 183</line>
<line>ALA CA 208</line>
<line>VAL CA 287</line>
<line>MET CA 281</line>
<line>GLY CA 227</line>
<line>ASN CA 249</line>
<line>PRO CA 227</line>
<line>LYS CA 248</line>
</n14>
</entryChain>
<parallel>
<x>20.83799934387207</x>
<y>21.39900016784668</y>
<z>0.9670000076293945</z>
</parallel>
<rotation>
<x>-0.968999981880188</x>
<y>0.24300000071525574</y>
<z>-0.03200000151991844</z>
<x>-0.20200000703334808</x>
<y>-0.7149999737739563</y>
<z>0.6700000166893005</z>
<x>0.14000000059604645</x>
<y>0.656000018119812</y>
<z>0.7419999837875366</z>
</rotation>
<rmsd>2.937206983566284</rmsd>
<dmax>4.083200931549072</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1NIH</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1NIHB</entryIDChain>
<sequence>ELHCDKLHVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1746 CA GLU B 90 11.837 27.676 26.117 1.00 24.11 C </line>
<line>ATOM 1755 CA LEU B 91 10.275 25.876 29.161 1.00 -1.51 C </line>
<line>ATOM 1763 CA HIS B 92 10.553 22.340 28.039 1.00 7.74 C </line>
<line>ATOM 1773 CA CYS B 93 14.023 23.105 26.943 1.00 7.49 C </line>
<line>ATOM 1779 CA ASP B 94 15.516 24.882 29.745 1.00 13.42 C </line>
<line>ATOM 1787 CA LYS B 95 13.496 23.928 32.671 1.00 4.32 C </line>
<line>ATOM 1796 CA LEU B 96 12.022 20.491 31.880 1.00 7.26 C </line>
<line>ATOM 1804 CA HIS B 97 14.887 19.162 29.558 1.00 14.24 C </line>
<line>ATOM 1814 CA VAL B 98 12.602 17.187 27.242 1.00 5.90 C </line>
<line>ATOM 1821 CA ASP B 99 14.259 15.818 24.084 1.00 8.77 C </line>
<line>ATOM 1829 CA PRO B 100 12.054 17.282 21.309 1.00 3.63 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL HIS LEU LYS ASP CYS HIS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 11.45 12.27 10.58 9.68 9.21 7.73 5.87 5.13 5.82 3.87 </line>
<line>LEU CA 11.78 11.95 9.20 8.16 6.28 5.15 5.37 5.16 3.72 </line>
<line>HIS CA 8.55 8.48 5.60 5.58 4.51 5.71 5.83 3.72 </line>
<line>CYS CA 8.34 7.83 6.09 4.81 5.93 5.81 3.64 </line>
<line>ASP CA 11.87 10.76 8.60 5.76 6.00 3.68 </line>
<line>LYS CA 13.24 11.84 8.70 5.86 3.82 </line>
<line>LEU CA 11.05 9.36 5.72 3.92 </line>
<line>HIS CA 8.92 6.45 3.81 </line>
<line>VAL CA 5.96 3.82 </line>
<line>ASP CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 227</line>
<line>LEU CA 246</line>
<line>HIS CA 296</line>
<line>CYS CA 240</line>
<line>ASP CA 190</line>
<line>LYS CA 182</line>
<line>LEU CA 248</line>
<line>HIS CA 231</line>
<line>VAL CA 315</line>
<line>ASP CA 285</line>
<line>PRO CA 336</line>
</n14>
</entryChain>
<parallel>
<x>-11.105999946594238</x>
<y>-9.991000175476074</y>
<z>7.618000030517578</z>
</parallel>
<rotation>
<x>-0.9120000004768372</x>
<y>0.34299999475479126</y>
<z>0.22300000488758087</z>
<x>-0.29600000381469727</x>
<y>-0.9300000071525574</y>
<z>0.21899999678134918</z>
<x>0.28299999237060547</x>
<y>0.1340000033378601</y>
<z>0.949999988079071</z>
</rotation>
<rmsd>0.6331310272216797</rmsd>
<dmax>1.2742420434951782</dmax>
</indel>