NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-2QU0A
confEVID 1CG5B-2QU0A
pdbIDA 1CG5
pdbIDB 2QU0
pdbChainA B
pdbChainB A
identity 0.328799992799759
indelSize 3
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDV--DHKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEA---IDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>-VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHF--DLSHGSAQVKGHGEKVAAALTKAVGHLDD---LPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR</seq2>
<ss_1> HHHHHHHHHHHHH -- HHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHH---GGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>- HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG -- HHHHHHHHHHHHHHHHHHH GGG--- HHHHHIIIII HHHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>VWKDV--DHKQI</sequence>
<secondary-structure>HHHH -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1228 CA VAL B 14 23.761 7.465 19.018 1.00 11.81 C </line>
<line>ATOM 1235 CA TRP B 15 23.136 6.135 22.539 1.00 15.91 C </line>
<line>ATOM 1249 CA LYS B 16 26.496 4.334 22.345 1.00 21.93 C </line>
<line>ATOM 1258 CA ASP B 17 28.269 7.511 21.252 1.00 21.54 C </line>
<line>ATOM 1266 CA VAL B 18 26.893 10.287 23.488 1.00 18.29 C </line>
<line>ATOM 1273 CA ASP B 19 27.297 10.909 27.217 1.00 17.66 C </line>
<line>ATOM 1281 CA HIS B 20 23.811 9.983 28.465 1.00 15.86 C </line>
<line>ATOM 1291 CA LYS B 21 23.479 12.158 31.569 1.00 18.06 C </line>
<line>ATOM 1300 CA GLN B 22 25.324 15.174 30.177 1.00 16.57 C </line>
<line>ATOM 1309 CA ILE B 23 23.507 15.573 26.837 1.00 13.83 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLN LYS HIS ASP VAL ASP LYS TRP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.27 13.65 13.40 9.78 9.57 6.14 5.03 5.32 3.82 </line>
<line>TRP CA 10.38 12.03 10.86 7.10 7.87 5.68 5.47 3.82 </line>
<line>LYS CA 12.47 13.42 12.47 8.75 8.22 6.07 3.80 </line>
<line>ASP CA 10.90 12.13 12.29 8.83 6.93 3.82 </line>
<line>VAL CA 7.11 8.43 8.97 5.86 3.80 </line>
<line>ASP CA 6.02 5.55 5.92 3.82 </line>
<line>HIS CA 5.83 5.67 3.80 </line>
<line>LYS CA 5.84 3.80 </line>
<line>GLN CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 361</line>
<line>TRP CA 326</line>
<line>LYS CA 221</line>
<line>ASP CA 222</line>
<line>VAL CA 289</line>
<line>ASP CA 272</line>
<line>HIS CA 330</line>
<line>LYS CA 311</line>
<line>GLN CA 334</line>
<line>ILE CA 384</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>AWGKVGGNAGAY</sequence>
<secondary-structure>HHHHHGGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 85 CA ALA A 13 -9.530 33.909 66.293 1.00 32.75 C </line>
<line>ATOM 90 CA TRP A 14 -10.884 35.550 63.142 1.00 32.76 C </line>
<line>ATOM 104 CA GLY A 15 -14.262 35.849 64.884 1.00 33.39 C </line>
<line>ATOM 108 CA LYS A 16 -12.241 37.581 67.544 1.00 35.75 C </line>
<line>ATOM 117 CA VAL A 17 -10.872 40.039 64.919 1.00 34.15 C </line>
<line>ATOM 124 CA GLY A 18 -14.523 41.006 64.279 1.00 34.56 C </line>
<line>ATOM 128 CA GLY A 19 -15.280 44.426 62.760 1.00 35.42 C </line>
<line>ATOM 132 CA ASN A 20 -11.582 45.331 62.859 1.00 35.25 C </line>
<line>ATOM 140 CA ALA A 21 -10.412 43.174 59.918 1.00 33.09 C </line>
<line>ATOM 145 CA GLY A 22 -10.416 46.212 57.611 1.00 31.17 C </line>
<line>ATOM 149 CA ALA A 23 -8.097 48.229 59.873 1.00 29.78 C </line>
<line>ATOM 154 CA TYR A 24 -5.747 45.225 60.344 1.00 27.91 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA GLY ALA ASN GLY GLY VAL LYS GLY TRP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 13.33 15.76 15.08 11.28 12.10 12.50 8.91 6.42 4.73 5.30 3.80 </line>
<line>TRP CA 11.31 13.39 12.02 8.29 9.81 9.91 6.66 4.83 5.03 3.81 </line>
<line>GLY CA 13.45 14.71 13.23 9.65 10.06 8.89 5.20 5.39 3.76 </line>
<line>LYS CA 12.35 13.76 13.28 9.63 9.08 8.89 5.25 3.85 </line>
<line>VAL CA 8.61 10.01 9.58 5.92 5.72 6.58 3.83 </line>
<line>GLY CA 10.50 10.62 9.40 6.37 5.42 3.82 </line>
<line>GLY CA 9.87 8.63 7.30 5.77 3.81 </line>
<line>ASN CA 6.35 5.43 5.45 3.83 </line>
<line>ALA CA 5.11 5.56 3.81 </line>
<line>GLY CA 5.50 3.82 </line>
<line>ALA CA 3.84 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 344</line>
<line>TRP CA 369</line>
<line>GLY CA 239</line>
<line>LYS CA 250</line>
<line>VAL CA 307</line>
<line>GLY CA 210</line>
<line>GLY CA 180</line>
<line>ASN CA 242</line>
<line>ALA CA 321</line>
<line>GLY CA 281</line>
<line>ALA CA 296</line>
<line>TYR CA 359</line>
</n14>
</entryChain>
<parallel>
<x>36.667999267578125</x>
<y>-31.107999801635742</y>
<z>-38.90999984741211</z>
</parallel>
<rotation>
<x>-0.5699999928474426</x>
<y>0.7379999756813049</y>
<z>-0.3610000014305115</z>
<x>0.421999990940094</x>
<y>0.6399999856948853</y>
<z>0.6420000195503235</z>
<x>0.7049999833106995</x>
<y>0.21299999952316284</y>
<z>-0.6759999990463257</z>
</rotation>
<rmsd>0.9449089765548706</rmsd>
<dmax>1.6748709678649902</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>DLHAHKLRVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 615 CA ASP A 85 -6.137 34.486 38.219 1.00 36.96 C </line>
<line>ATOM 623 CA LEU A 86 -5.837 38.170 38.921 1.00 33.50 C </line>
<line>ATOM 631 CA HIS A 87 -2.750 37.835 41.066 1.00 32.68 C </line>
<line>ATOM 641 CA ALA A 88 -0.896 35.098 39.146 1.00 34.75 C </line>
<line>ATOM 646 CA HIS A 89 -1.806 35.524 35.486 1.00 37.57 C </line>
<line>ATOM 656 CA LYS A 90 -3.005 39.163 35.256 1.00 36.94 C </line>
<line>ATOM 665 CA LEU A 91 -0.752 40.905 37.826 1.00 33.66 C </line>
<line>ATOM 673 CA ARG A 92 2.187 38.476 37.699 1.00 32.53 C </line>
<line>ATOM 684 CA VAL A 93 2.861 38.861 41.461 1.00 30.56 C </line>
<line>ATOM 691 CA ASP A 94 6.025 37.084 42.684 1.00 29.10 C </line>
<line>ATOM 699 CA PRO A 95 5.058 34.246 45.052 1.00 28.38 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL ARG LEU LYS HIS ALA HIS LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.12 13.21 10.52 9.25 8.39 6.36 5.23 5.36 5.55 3.76 </line>
<line>LEU CA 13.10 12.49 9.09 8.12 5.88 4.74 5.92 5.82 3.77 </line>
<line>HIS CA 9.47 8.95 5.72 6.01 4.89 5.97 6.11 3.82 </line>
<line>ALA CA 8.43 8.02 5.80 4.80 5.96 6.01 3.80 </line>
<line>HIS CA 11.84 10.75 8.28 5.44 5.96 3.84 </line>
<line>LYS CA 13.61 11.88 8.54 5.78 3.84 </line>
<line>LEU CA 11.42 9.17 5.52 3.81 </line>
<line>ARG CA 8.96 6.44 3.84 </line>
<line>VAL CA 6.25 3.83 </line>
<line>ASP CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASP CA 230</line>
<line>LEU CA 260</line>
<line>HIS CA 321</line>
<line>ALA CA 256</line>
<line>HIS CA 204</line>
<line>LYS CA 202</line>
<line>LEU CA 257</line>
<line>ARG CA 244</line>
<line>VAL CA 308</line>
<line>ASP CA 275</line>
<line>PRO CA 277</line>
</n14>
</entryChain>
<parallel>
<x>3.249000072479248</x>
<y>-24.81999969482422</y>
<z>-2.5239999294281006</z>
</parallel>
<rotation>
<x>-0.27300000190734863</x>
<y>0.9549999833106995</y>
<z>-0.11500000208616257</z>
<x>0.8100000023841858</x>
<y>0.2930000126361847</y>
<z>0.5070000290870667</z>
<x>0.5180000066757202</x>
<y>0.04500000178813934</y>
<z>-0.8539999723434448</z>
</rotation>
<rmsd>0.8694289922714233</rmsd>
<dmax>1.6074960231781006</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>YFPHF--DLSHG</sequence>
<secondary-structure>G -- </secondary-structure>
<atom-coordinate>
<line>ATOM 298 CA TYR A 42 2.907 46.598 42.438 1.00 32.88 C </line>
<line>ATOM 310 CA PHE A 43 1.096 49.759 43.570 1.00 33.90 C </line>
<line>ATOM 321 CA PRO A 44 2.685 52.703 41.696 1.00 34.52 C </line>
<line>ATOM 328 CA HIS A 45 -0.863 54.031 41.338 1.00 35.24 C </line>
<line>ATOM 338 CA PHE A 46 -1.417 54.281 45.100 1.00 36.19 C </line>
<line>ATOM 349 CA ASP A 47 -0.627 57.029 47.549 1.00 38.47 C </line>
<line>ATOM 357 CA LEU A 48 1.526 54.925 49.927 1.00 40.14 C </line>
<line>ATOM 365 CA SER A 49 1.989 57.618 52.547 1.00 41.87 C </line>
<line>ATOM 371 CA HIS A 50 1.106 56.646 56.099 1.00 43.12 C </line>
<line>ATOM 381 CA GLY A 51 -2.641 56.763 56.509 1.00 41.13 C </line>
</atom-coordinate>
<distance-map>
<line> GLY HIS SER LEU ASP PHE HIS PRO PHE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 18.22 17.05 14.98 11.28 12.14 9.21 8.41 6.15 3.81 </line>
<line>PHE CA 15.18 14.30 11.96 8.20 8.46 5.39 5.20 3.83 </line>
<line>PRO CA 16.26 15.02 11.93 8.60 8.00 5.56 3.81 </line>
<line>HIS CA 15.52 15.12 12.11 8.96 6.90 3.81 </line>
<line>PHE CA 11.74 11.53 8.84 5.69 3.76 </line>
<line>ASP CA 9.19 8.73 5.67 3.84 </line>
<line>LEU CA 8.00 6.42 3.79 </line>
<line>SER CA 6.15 3.79 </line>
<line>HIS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TYR CA 281</line>
<line>PHE CA 269</line>
<line>PRO CA 173</line>
<line>HIS CA 159</line>
<line>PHE CA 206</line>
<line>ASP CA 191</line>
<line>LEU CA 246</line>
<line>SER CA 201</line>
<line>HIS CA 197</line>
<line>GLY CA 197</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>LFSKLQGLFSAN</sequence>
<secondary-structure> GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1461 CA LEU B 41 6.633 21.836 38.356 1.00 11.08 C </line>
<line>ATOM 1469 CA PHE B 42 10.326 22.557 39.051 1.00 11.51 C </line>
<line>ATOM 1480 CA SER B 43 10.178 25.260 41.760 1.00 14.88 C </line>
<line>ATOM 1486 CA LYS B 44 12.566 23.069 43.776 1.00 15.70 C </line>
<line>ATOM 1495 CA LEU B 45 15.321 24.072 41.318 1.00 12.62 C </line>
<line>ATOM 1503 CA GLN B 46 15.341 27.535 42.949 1.00 14.60 C </line>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA SER PHE LEU GLY GLN LEU LYS SER PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 19.33 17.41 16.38 12.90 13.63 12.03 11.38 9.45 8.13 5.99 3.83 </line>
<line>PHE CA 15.85 14.26 13.03 9.56 9.98 8.82 8.07 5.69 5.25 3.83 </line>
<line>SER CA 17.15 16.11 14.15 10.49 9.59 7.38 5.77 5.30 3.82 </line>
<line>LYS CA 15.59 15.26 13.73 10.61 9.15 8.22 5.32 3.83 </line>
<line>LEU CA 12.15 11.75 9.95 6.92 5.49 5.53 3.83 </line>
<line>GLN CA 14.05 13.99 11.35 8.32 5.50 3.81 </line>
<line>GLY CA 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 8.36 6.66 3.83 </line>
<line>SER CA 5.36 3.81 </line>
<line>ALA CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 249</line>
<line>PHE CA 279</line>
<line>SER CA 189</line>
<line>LYS CA 180</line>
<line>LEU CA 221</line>
<line>GLN CA 159</line>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
</n14>
</entryChain>
<parallel>
<x>-13.437000274658203</x>
<y>28.976999282836914</y>
<z>6.419000148773193</z>
</parallel>
<rotation>
<x>-0.45899999141693115</x>
<y>0.6470000147819519</y>
<z>0.6079999804496765</z>
<x>0.7039999961853027</x>
<y>0.6830000281333923</y>
<z>-0.19499999284744263</z>
<x>-0.5419999957084656</x>
<y>0.33899998664855957</y>
<z>-0.7689999938011169</z>
</rotation>
<rmsd>1.3342430591583252</rmsd>
<dmax>2.0033841133117676</dmax>
</indel>