NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-2QU0C
confEVID 1CG5B-2QU0C
pdbIDA 1CG5
pdbIDB 2QU0
pdbChainA B
pdbChainB C
identity 0.328700006008148
indelSize 3
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVD--HKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>-VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHFD--LSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR</seq2>
<ss_1> HHHHHHHHHHHHH --HHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>- HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG -- HHHHHHHHHHHHHHHHHGGG HHHH HHHHIIIIII HHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>WKDVD--HKQIT</sequence>
<secondary-structure>HHH --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1235 CA TRP B 15 23.136 6.135 22.539 1.00 15.91 C </line>
<line>ATOM 1249 CA LYS B 16 26.496 4.334 22.345 1.00 21.93 C </line>
<line>ATOM 1258 CA ASP B 17 28.269 7.511 21.252 1.00 21.54 C </line>
<line>ATOM 1266 CA VAL B 18 26.893 10.287 23.488 1.00 18.29 C </line>
<line>ATOM 1273 CA ASP B 19 27.297 10.909 27.217 1.00 17.66 C </line>
<line>ATOM 1281 CA HIS B 20 23.811 9.983 28.465 1.00 15.86 C </line>
<line>ATOM 1291 CA LYS B 21 23.479 12.158 31.569 1.00 18.06 C </line>
<line>ATOM 1300 CA GLN B 22 25.324 15.174 30.177 1.00 16.57 C </line>
<line>ATOM 1309 CA ILE B 23 23.507 15.573 26.837 1.00 13.83 C </line>
<line>ATOM 1317 CA THR B 24 20.171 15.108 28.655 1.00 9.73 C </line>
</atom-coordinate>
<distance-map>
<line> THR ILE GLN LYS HIS ASP VAL ASP LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.26 10.38 12.03 10.86 7.10 7.87 5.68 5.47 3.82 </line>
<line>LYS CA 14.00 12.47 13.42 12.47 8.75 8.22 6.07 3.80 </line>
<line>ASP CA 13.35 10.90 12.13 12.29 8.83 6.93 3.82 </line>
<line>VAL CA 9.75 7.11 8.43 8.97 5.86 3.80 </line>
<line>ASP CA 8.40 6.02 5.55 5.92 3.82 </line>
<line>HIS CA 6.29 5.83 5.67 3.80 </line>
<line>LYS CA 5.30 5.84 3.80 </line>
<line>GLN CA 5.37 3.82 </line>
<line>ILE CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>TRP CA 326</line>
<line>LYS CA 221</line>
<line>ASP CA 222</line>
<line>VAL CA 289</line>
<line>ASP CA 272</line>
<line>HIS CA 330</line>
<line>LYS CA 311</line>
<line>GLN CA 334</line>
<line>ILE CA 384</line>
<line>THR CA 441</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2QU0C</entryIDChain>
<sequence>WGKVGGNAGAYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2289 CA TRP C 14 9.323 9.307 32.822 1.00 32.66 C </line>
<line>ATOM 2303 CA GLY C 15 8.181 6.792 30.253 1.00 34.91 C </line>
<line>ATOM 2307 CA LYS C 16 11.214 7.439 28.064 1.00 36.80 C </line>
<line>ATOM 2316 CA VAL C 17 13.416 6.948 31.122 1.00 36.67 C </line>
<line>ATOM 2323 CA GLY C 18 12.235 3.314 31.278 1.00 37.36 C </line>
<line>ATOM 2327 CA GLY C 19 14.499 1.018 33.326 1.00 37.74 C </line>
<line>ATOM 2331 CA ASN C 20 17.186 3.596 34.075 1.00 37.82 C </line>
<line>ATOM 2339 CA ALA C 21 14.739 5.036 36.614 1.00 35.87 C </line>
<line>ATOM 2344 CA GLY C 22 16.655 3.654 39.601 1.00 34.29 C </line>
<line>ATOM 2348 CA ALA C 23 19.858 4.643 37.828 1.00 34.89 C </line>
<line>ATOM 2353 CA TYR C 24 18.805 8.337 37.665 1.00 35.48 C </line>
<line>ATOM 2365 CA GLY C 25 17.257 8.555 41.151 1.00 33.54 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR ALA GLY ALA ASN GLY GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.53 10.69 12.56 11.47 7.87 9.80 9.79 6.84 5.02 5.45 3.77 </line>
<line>GLY CA 14.29 13.05 14.08 13.00 9.30 10.29 9.09 5.44 5.31 3.80 </line>
<line>LYS CA 14.46 12.27 13.34 13.31 9.56 9.30 8.93 5.33 3.80 </line>
<line>VAL CA 10.86 8.59 9.58 9.66 5.96 5.85 6.42 3.82 </line>
<line>GLY CA 12.25 10.45 10.14 9.43 6.14 5.69 3.82 </line>
<line>GLY CA 11.21 9.54 7.88 7.14 5.20 3.80 </line>
<line>ASN CA 8.64 6.16 4.72 5.55 3.81 </line>
<line>ALA CA 6.27 5.34 5.28 3.81 </line>
<line>GLY CA 5.18 5.50 3.79 </line>
<line>ALA CA 5.75 3.84 </line>
<line>TYR CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 385</line>
<line>GLY CA 263</line>
<line>LYS CA 248</line>
<line>VAL CA 301</line>
<line>GLY CA 209</line>
<line>GLY CA 191</line>
<line>ASN CA 244</line>
<line>ALA CA 308</line>
<line>GLY CA 285</line>
<line>ALA CA 308</line>
<line>TYR CA 362</line>
<line>GLY CA 413</line>
</n14>
</entryChain>
<parallel>
<x>12.385000228881836</x>
<y>3.6700000762939453</y>
<z>-7.565999984741211</z>
</parallel>
<rotation>
<x>0.11999999731779099</x>
<y>0.9860000014305115</y>
<z>0.11400000005960464</z>
<x>-0.6809999942779541</x>
<y>0.16599999368190765</y>
<z>-0.7139999866485596</z>
<x>-0.7229999899864197</x>
<y>0.00800000037997961</y>
<z>0.6909999847412109</z>
</rotation>
<rmsd>1.4125210046768188</rmsd>
<dmax>3.317662000656128</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2QU0C</entryIDChain>
<sequence>DLHAHKLRVDP</sequence>
<secondary-structure>IIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 2814 CA ASP C 85 3.849 10.557 57.010 1.00 40.41 C </line>
<line>ATOM 2822 CA LEU C 86 7.365 9.217 57.111 1.00 38.20 C </line>
<line>ATOM 2830 CA HIS C 87 9.042 12.335 55.655 1.00 38.79 C </line>
<line>ATOM 2840 CA ALA C 88 7.036 14.860 57.634 1.00 40.84 C </line>
<line>ATOM 2845 CA HIS C 89 6.132 13.180 60.921 1.00 42.57 C </line>
<line>ATOM 2855 CA LYS C 90 8.742 10.355 61.356 1.00 40.79 C </line>
<line>ATOM 2864 CA LEU C 91 11.820 11.736 59.572 1.00 38.02 C </line>
<line>ATOM 2872 CA ARG C 92 11.345 15.527 59.964 1.00 35.36 C </line>
<line>ATOM 2883 CA VAL C 93 12.825 16.487 56.605 1.00 31.80 C </line>
<line>ATOM 2890 CA ASP C 94 13.210 20.196 56.093 1.00 30.40 C </line>
<line>ATOM 2898 CA PRO C 95 10.798 21.190 53.287 1.00 29.65 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL ARG LEU LYS HIS ALA HIS LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.24 13.47 10.77 9.47 8.46 6.55 5.23 5.39 5.65 3.76 </line>
<line>LEU CA 13.03 12.48 9.11 7.99 5.68 4.61 5.63 5.68 3.83 </line>
<line>HIS CA 9.33 8.91 5.70 5.84 4.84 6.04 6.08 3.78 </line>
<line>ALA CA 8.55 8.30 6.10 4.94 6.03 6.09 3.80 </line>
<line>HIS CA 12.01 11.07 8.62 5.80 6.02 3.87 </line>
<line>LYS CA 13.67 12.02 8.77 5.96 3.82 </line>
<line>LEU CA 11.40 9.25 5.69 3.84 </line>
<line>ARG CA 8.77 6.35 3.79 </line>
<line>VAL CA 6.10 3.76 </line>
<line>ASP CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASP CA 231</line>
<line>LEU CA 255</line>
<line>HIS CA 310</line>
<line>ALA CA 257</line>
<line>HIS CA 203</line>
<line>LYS CA 204</line>
<line>LEU CA 250</line>
<line>ARG CA 243</line>
<line>VAL CA 304</line>
<line>ASP CA 272</line>
<line>PRO CA 268</line>
</n14>
</entryChain>
<parallel>
<x>-7.068999767303467</x>
<y>-0.3889999985694885</y>
<z>-21.854999542236328</z>
</parallel>
<rotation>
<x>0.6690000295639038</x>
<y>0.7210000157356262</y>
<z>0.18199999630451202</z>
<x>-0.5759999752044678</x>
<y>0.6570000052452087</y>
<z>-0.4860000014305115</z>
<x>-0.4690000116825104</x>
<y>0.2199999988079071</y>
<z>0.8550000190734863</z>
</rotation>
<rmsd>0.8564810156822205</rmsd>
<dmax>1.630465030670166</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2QU0C</entryIDChain>
<sequence>FPHFD--LSHGS</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 2509 CA PHE C 43 21.468 9.397 56.104 1.00 37.38 C </line>
<line>ATOM 2520 CA PRO C 44 24.018 9.018 58.911 1.00 38.40 C </line>
<line>ATOM 2527 CA HIS C 45 23.629 5.251 58.401 1.00 41.02 C </line>
<line>ATOM 2537 CA PHE C 46 24.644 5.329 54.695 1.00 42.58 C </line>
<line>ATOM 2548 CA ASP C 47 27.916 5.115 52.835 1.00 45.20 C </line>
<line>ATOM 2556 CA LEU C 48 27.697 8.180 50.624 1.00 47.74 C </line>
<line>ATOM 2564 CA SER C 49 30.465 7.542 48.087 1.00 50.48 C </line>
<line>ATOM 2570 CA HIS C 50 30.038 6.631 44.442 1.00 52.17 C </line>
<line>ATOM 2580 CA GLY C 51 28.317 3.400 43.482 1.00 52.11 C </line>
<line>ATOM 2584 CA SER C 52 27.500 2.781 47.120 1.00 51.71 C </line>
</atom-coordinate>
<distance-map>
<line> SER GLY HIS SER LEU ASP PHE HIS PRO PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 12.68 15.56 14.73 12.19 8.39 8.40 5.35 5.21 3.81 </line>
<line>PRO CA 13.79 16.97 15.85 12.68 9.11 8.21 5.64 3.82 </line>
<line>HIS CA 12.18 15.75 15.42 12.58 9.25 7.03 3.84 </line>
<line>PHE CA 8.49 11.96 11.66 9.08 5.83 3.77 </line>
<line>ASP CA 6.19 9.52 8.79 5.91 3.79 </line>
<line>LEU CA 6.44 8.62 6.79 3.81 </line>
<line>SER CA 5.69 6.56 3.78 </line>
<line>HIS CA 5.33 3.78 </line>
<line>GLY CA 3.78 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>PHE CA 272</line>
<line>PRO CA 172</line>
<line>HIS CA 156</line>
<line>PHE CA 206</line>
<line>ASP CA 195</line>
<line>LEU CA 250</line>
<line>SER CA 208</line>
<line>HIS CA 199</line>
<line>GLY CA 194</line>
<line>SER CA 212</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>FSKLQGLFSAND</sequence>
<secondary-structure> GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1469 CA PHE B 42 10.326 22.557 39.051 1.00 11.51 C </line>
<line>ATOM 1480 CA SER B 43 10.178 25.260 41.760 1.00 14.88 C </line>
<line>ATOM 1486 CA LYS B 44 12.566 23.069 43.776 1.00 15.70 C </line>
<line>ATOM 1495 CA LEU B 45 15.321 24.072 41.318 1.00 12.62 C </line>
<line>ATOM 1503 CA GLN B 46 15.341 27.535 42.949 1.00 14.60 C </line>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
<line>ATOM 1554 CA ASP B 53 23.404 22.661 38.409 1.00 17.12 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ASN ALA SER PHE LEU GLY GLN LEU LYS SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 13.09 15.85 14.26 13.03 9.56 9.98 8.82 8.07 5.69 5.25 3.83 </line>
<line>SER CA 13.89 17.15 16.11 14.15 10.49 9.59 7.38 5.77 5.30 3.82 </line>
<line>LYS CA 12.10 15.59 15.26 13.73 10.61 9.15 8.22 5.32 3.83 </line>
<line>LEU CA 8.71 12.15 11.75 9.95 6.92 5.49 5.53 3.83 </line>
<line>GLN CA 10.46 14.05 13.99 11.35 8.32 5.50 3.81 </line>
<line>GLY CA 10.04 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 6.29 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 6.51 8.36 6.66 3.83 </line>
<line>SER CA 5.18 5.36 3.81 </line>
<line>ALA CA 5.63 3.80 </line>
<line>ASN CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>PHE CA 279</line>
<line>SER CA 189</line>
<line>LYS CA 180</line>
<line>LEU CA 221</line>
<line>GLN CA 159</line>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
<line>ASP CA 235</line>
</n14>
</entryChain>
<parallel>
<x>10.295000076293945</x>
<y>-17.36400032043457</y>
<z>14.10200023651123</z>
</parallel>
<rotation>
<x>0.5230000019073486</x>
<y>-0.5740000009536743</y>
<z>-0.6299999952316284</z>
<x>0.8420000076293945</x>
<y>0.23600000143051147</y>
<z>0.48399999737739563</z>
<x>-0.1289999932050705</x>
<y>-0.7839999794960022</y>
<z>0.6069999933242798</z>
</rotation>
<rmsd>2.0064361095428467</rmsd>
<dmax>4.517206192016602</dmax>
</indel>