NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG5B-2RAOB
confEVID 1CG5B-2RAOB
pdbIDA 1CG5
pdbIDB 2RAO
pdbChainA B
pdbChainB B
identity 0.349299997091293
indelSize 2
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFS----ANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>VHLSSEEKSAVTALWGKVNVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1> HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGG ---- HHHHHHHHHHHHHHHHHGGG HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG HHHHHHHHHHHH GGGGGGGG HHHHH HHHHHHHHHHHHHHHHHH GGGHHHH HHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>QGLFS----ANDIG</sequence>
<secondary-structure> ---- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1503 CA GLN B 46 15.341 27.535 42.949 1.00 14.60 C </line>
<line>ATOM 1512 CA GLY B 47 15.979 29.304 39.638 1.00 12.38 C </line>
<line>ATOM 1516 CA LEU B 48 19.132 27.249 38.974 1.00 14.42 C </line>
<line>ATOM 1524 CA PHE B 49 18.550 25.848 35.461 1.00 14.93 C </line>
<line>ATOM 1535 CA SER B 50 22.085 25.237 34.115 1.00 14.96 C </line>
<line>ATOM 1541 CA ALA B 51 23.150 21.797 32.856 1.00 15.97 C </line>
<line>ATOM 1546 CA ASN B 52 25.769 21.641 35.602 1.00 23.04 C </line>
<line>ATOM 1554 CA ASP B 53 23.404 22.661 38.409 1.00 17.12 C </line>
<line>ATOM 1562 CA ILE B 54 22.833 19.829 40.908 1.00 17.79 C </line>
<line>ATOM 1570 CA GLY B 55 19.041 19.766 40.492 1.00 15.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ILE ASP ASN ALA SER PHE LEU GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 8.95 10.94 10.46 14.05 13.99 11.35 8.32 5.50 3.81 </line>
<line>GLY CA 10.05 11.76 10.04 13.07 12.40 9.18 6.00 3.82 </line>
<line>LEU CA 7.64 8.51 6.29 9.32 9.13 6.03 3.83 </line>
<line>PHE CA 7.91 9.18 6.51 8.36 6.66 3.83 </line>
<line>SER CA 8.94 8.71 5.18 5.36 3.81 </line>
<line>ALA CA 8.91 8.30 5.63 3.80 </line>
<line>ASN CA 8.53 6.33 3.81 </line>
<line>ASP CA 5.64 3.82 </line>
<line>ILE CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLN CA 159</line>
<line>GLY CA 192</line>
<line>LEU CA 226</line>
<line>PHE CA 294</line>
<line>SER CA 275</line>
<line>ALA CA 307</line>
<line>ASN CA 225</line>
<line>ASP CA 235</line>
<line>ILE CA 224</line>
<line>GLY CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RAO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2RAOB</entryIDChain>
<sequence>GDLSSANAVMNNPK</sequence>
<secondary-structure> HHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1456 CA GLY B 46 27.320 6.793 -6.598 1.00 29.12 C </line>
<line>ATOM 1460 CA ASP B 47 25.856 10.045 -5.308 1.00 34.90 C </line>
<line>ATOM 1468 CA LEU B 48 22.065 10.193 -5.640 1.00 33.75 C </line>
<line>ATOM 1476 CA SER B 49 21.743 12.941 -2.979 1.00 37.20 C </line>
<line>ATOM 1482 CA SER B 50 19.972 15.353 -5.316 1.00 34.34 C </line>
<line>ATOM 1488 CA ALA B 51 17.712 15.620 -8.338 1.00 31.15 C </line>
<line>ATOM 1493 CA ASN B 52 20.528 16.997 -10.527 1.00 30.43 C </line>
<line>ATOM 1501 CA ALA B 53 22.972 14.216 -9.522 1.00 25.33 C </line>
<line>ATOM 1506 CA VAL B 54 20.343 11.505 -10.177 1.00 22.70 C </line>
<line>ATOM 1513 CA MET B 55 19.254 12.733 -13.633 1.00 27.91 C </line>
<line>ATOM 1521 CA ASN B 56 22.834 13.370 -14.806 1.00 29.97 C </line>
<line>ATOM 1529 CA ASN B 57 24.248 10.054 -13.439 1.00 24.82 C </line>
<line>ATOM 1537 CA PRO B 58 25.361 7.882 -16.448 1.00 21.77 C </line>
<line>ATOM 1544 CA LYS B 59 24.731 4.566 -14.601 1.00 21.73 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN ASN MET VAL ALA ASN ALA SER SER LEU ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 8.70 10.10 8.18 11.43 12.24 9.15 9.09 12.87 13.16 11.35 9.06 6.33 3.79 </line>
<line>ASP CA 10.85 11.36 8.29 10.51 10.96 7.50 6.59 10.20 10.32 7.92 5.54 3.81 </line>
<line>LEU CA 10.91 11.53 8.10 9.73 8.85 5.03 5.66 8.52 7.46 5.58 3.84 </line>
<line>SER CA 14.63 14.84 11.14 11.88 10.94 7.47 6.78 8.65 7.22 3.80 </line>
<line>SER CA 15.01 14.45 10.60 10.11 8.75 6.21 5.29 5.49 3.78 </line>
<line>ALA CA 14.51 13.57 9.99 8.55 6.22 5.22 5.57 3.82 </line>
<line>ASN CA 13.74 11.90 8.40 6.06 5.43 5.51 3.84 </line>
<line>ALA CA 11.05 9.68 5.86 5.35 5.74 3.83 </line>
<line>VAL CA 9.33 8.81 5.29 5.58 3.83 </line>
<line>MET CA 9.88 8.29 5.67 3.82 </line>
<line>ASN CA 9.01 6.26 3.86 </line>
<line>ASN CA 5.63 3.87 </line>
<line>PRO CA 3.85 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLY CA 197</line>
<line>ASP CA 202</line>
<line>LEU CA 258</line>
<line>SER CA 197</line>
<line>SER CA 186</line>
<line>ALA CA 215</line>
<line>ASN CA 177</line>
<line>ALA CA 207</line>
<line>VAL CA 294</line>
<line>MET CA 280</line>
<line>ASN CA 224</line>
<line>ASN CA 254</line>
<line>PRO CA 235</line>
<line>LYS CA 254</line>
</n14>
</entryChain>
<parallel>
<x>-2.484999895095825</x>
<y>13.723999977111816</y>
<z>45.71500015258789</z>
</parallel>
<rotation>
<x>0.2849999964237213</x>
<y>0.5199999809265137</y>
<z>0.8050000071525574</z>
<x>0.6499999761581421</x>
<y>0.5130000114440918</y>
<z>-0.5609999895095825</z>
<x>-0.7049999833106995</x>
<y>0.6830000281333923</y>
<z>-0.19200000166893005</z>
</rotation>
<rmsd>2.7809860706329346</rmsd>
<dmax>3.919603109359741</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG5</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG5B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 0.342 7.281 34.534 1.00 12.77 C </line>
<line>ATOM 1817 CA LYS B 87 2.931 8.590 36.988 1.00 15.50 C </line>
<line>ATOM 1826 CA HIS B 88 3.454 11.761 34.884 1.00 11.99 C </line>
<line>ATOM 1836 CA GLN B 89 -0.280 12.515 34.969 1.00 11.63 C </line>
<line>ATOM 1845 CA GLU B 90 -0.189 12.109 38.777 1.00 15.74 C </line>
<line>ATOM 1854 CA ILE B 91 2.797 14.478 38.988 1.00 13.51 C </line>
<line>ATOM 1862 CA GLY B 92 0.826 16.903 36.812 1.00 9.43 C </line>
<line>ATOM 1866 CA VAL B 93 2.983 17.154 33.681 1.00 10.51 C </line>
<line>ATOM 1873 CA ASP B 94 1.480 18.641 30.492 1.00 9.50 C </line>
<line>ATOM 1881 CA THR B 95 2.032 16.185 27.621 1.00 8.64 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.40 12.11 10.26 9.90 8.81 6.45 5.29 5.47 3.80 </line>
<line>LYS CA 12.09 12.06 9.18 8.58 6.22 5.03 5.46 3.84 </line>
<line>HIS CA 8.62 8.40 5.55 6.09 4.97 5.34 3.81 </line>
<line>GLN CA 8.53 7.79 5.82 4.89 5.43 3.83 </line>
<line>GLU CA 12.08 10.68 7.84 5.28 3.82 </line>
<line>ILE CA 11.52 9.55 5.95 3.81 </line>
<line>GLY CA 9.30 6.59 3.81 </line>
<line>VAL CA 6.21 3.83 </line>
<line>ASP CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>LYS CA 228</line>
<line>HIS CA 286</line>
<line>GLN CA 225</line>
<line>GLU CA 182</line>
<line>ILE CA 215</line>
<line>GLY CA 220</line>
<line>VAL CA 298</line>
<line>ASP CA 280</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RAO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2RAOB</entryIDChain>
<sequence>ELHCDKLHVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1776 CA GLU B 90 13.730 -14.421 -9.264 1.00 29.13 C </line>
<line>ATOM 1785 CA LEU B 91 16.454 -11.743 -9.339 1.00 27.22 C </line>
<line>ATOM 1793 CA HIS B 92 14.200 -8.951 -7.903 1.00 27.45 C </line>
<line>ATOM 1803 CA CYS B 93 12.244 -11.077 -5.390 1.00 32.74 C </line>
<line>ATOM 1809 CA ASP B 94 14.792 -13.704 -4.218 1.00 37.14 C </line>
<line>ATOM 1817 CA LYS B 95 18.142 -11.816 -4.332 1.00 35.12 C </line>
<line>ATOM 1826 CA LEU B 96 17.197 -8.142 -4.070 1.00 30.49 C </line>
<line>ATOM 1834 CA HIS B 97 14.017 -8.317 -1.822 1.00 29.51 C </line>
<line>ATOM 1844 CA VAL B 98 12.266 -5.455 -3.637 1.00 23.32 C </line>
<line>ATOM 1851 CA ASP B 99 8.833 -5.118 -2.146 1.00 22.37 C </line>
<line>ATOM 1859 CA PRO B 100 6.264 -5.486 -4.959 1.00 22.18 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL HIS LEU LYS ASP CYS HIS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.41 12.70 10.69 9.63 8.86 7.11 5.21 5.33 5.66 3.82 </line>
<line>LEU CA 12.73 12.40 9.47 8.61 6.43 5.28 5.73 5.81 3.86 </line>
<line>HIS CA 9.15 8.75 5.84 6.12 4.93 6.04 6.04 3.83 </line>
<line>CYS CA 8.20 7.59 5.89 4.85 5.91 6.04 3.84 </line>
<line>ASP CA 11.87 10.65 8.65 5.95 6.06 3.85 </line>
<line>LYS CA 13.47 11.67 8.69 5.96 3.80 </line>
<line>LEU CA 11.29 9.10 5.63 3.90 </line>
<line>HIS CA 8.83 6.10 3.81 </line>
<line>VAL CA 6.15 3.76 </line>
<line>ASP CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 231</line>
<line>LEU CA 238</line>
<line>HIS CA 305</line>
<line>CYS CA 250</line>
<line>ASP CA 198</line>
<line>LYS CA 179</line>
<line>LEU CA 243</line>
<line>HIS CA 233</line>
<line>VAL CA 315</line>
<line>ASP CA 281</line>
<line>PRO CA 312</line>
</n14>
</entryChain>
<parallel>
<x>-12.755000114440918</x>
<y>22.825000762939453</y>
<z>41.90999984741211</z>
</parallel>
<rotation>
<x>0.4880000054836273</x>
<y>-0.15800000727176666</y>
<z>0.859000027179718</z>
<x>0.7149999737739563</x>
<y>0.6370000243186951</y>
<z>-0.289000004529953</z>
<x>-0.5009999871253967</x>
<y>0.7549999952316284</y>
<z>0.4230000078678131</z>
</rotation>
<rmsd>0.7436190247535706</rmsd>
<dmax>1.5084450244903564</dmax>
</indel>