NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG8A-2DN1B
confEVID 1CG8A-2DN1B
pdbIDA 1CG8
pdbIDB 2DN1
pdbChainA A
pdbChainB B
identity 0.333299994468689
indelSize 3
alignment <alignment>
<seq1>VLSSQNKKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFSGFE-----ACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKHGENLLVDPHNFHLFADCIVVTLAVNLQA-FTPVTHCAVDKFLELVAYELSSCYR</seq1>
<seq2>HLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1> HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH GGGG ----- HHHHHHHHHHHHHHHHGGG HHHHHHHHHHIIIII HHHHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHGGG -- HHHHHHHHHHHHHHH GGGG GGG HHHH HHHHHHHHHHHHHHHHHH HHHH HHHHIIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>FSGFE-----ACNEQ</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 355 CA PHE A 46 -27.284 35.396 19.710 1.00 42.88 C </line>
<line>ATOM 366 CA SER A 47 -29.269 32.564 18.118 1.00 47.58 C </line>
<line>ATOM 372 CA GLY A 48 -26.542 31.383 15.762 1.00 41.25 C </line>
<line>ATOM 376 CA PHE A 49 -22.794 31.852 15.311 1.00 36.25 C </line>
<line>ATOM 387 CA GLU A 50 -22.258 31.320 11.566 1.00 36.49 C </line>
<line>ATOM 396 CA ALA A 51 -21.039 34.248 9.422 1.00 36.72 C </line>
<line>ATOM 401 CA CYS A 52 -24.443 34.247 7.685 1.00 45.39 C </line>
<line>ATOM 407 CA ASN A 53 -26.345 34.831 10.938 1.00 44.70 C </line>
<line>ATOM 415 CA GLU A 54 -27.858 38.343 10.895 1.00 42.86 C </line>
<line>ATOM 424 CA GLN A 55 -26.912 38.968 14.531 1.00 35.19 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLU ASN CYS ALA GLU PHE GLY SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 6.30 9.31 8.84 12.41 12.09 10.40 7.22 5.68 3.81 </line>
<line>SER CA 7.71 9.36 8.08 11.62 12.09 9.68 7.09 3.79 </line>
<line>GLY CA 7.69 8.59 5.93 8.82 8.87 6.00 3.80 </line>
<line>PHE CA 8.26 9.34 6.37 8.16 6.60 3.82 </line>
<line>GLU CA 9.43 9.01 5.42 5.33 3.83 </line>
<line>ALA CA 9.10 8.09 5.55 3.82 </line>
<line>CYS CA 8.67 6.22 3.81 </line>
<line>ASN CA 5.51 3.82 </line>
<line>GLU CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>PHE CA 229</line>
<line>SER CA 184</line>
<line>GLY CA 234</line>
<line>PHE CA 289</line>
<line>GLU CA 259</line>
<line>ALA CA 293</line>
<line>CYS CA 210</line>
<line>ASN CA 230</line>
<line>GLU CA 218</line>
<line>GLN CA 251</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2DN1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2DN1B</entryIDChain>
<sequence>FGDLSTPDAVMGNPK</sequence>
<secondary-structure>G HHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1401 CA PHE B 45 8.107 47.384 -2.689 1.00 27.15 C </line>
<line>ATOM 1412 CA GLY B 46 9.164 51.000 -3.139 1.00 29.71 C </line>
<line>ATOM 1416 CA ASP B 47 11.508 52.714 -0.724 1.00 24.76 C </line>
<line>ATOM 1424 CA LEU B 48 14.349 50.413 0.331 1.00 22.80 C </line>
<line>ATOM 1432 CA SER B 49 16.978 53.151 0.316 1.00 24.12 C </line>
<line>ATOM 1438 CA THR B 50 18.033 53.141 3.960 1.00 21.84 C </line>
<line>ATOM 1445 CA PRO B 51 17.762 50.588 6.778 1.00 19.47 C </line>
<line>ATOM 1452 CA ASP B 52 15.083 52.747 8.441 1.00 22.00 C </line>
<line>ATOM 1460 CA ALA B 53 13.205 52.960 5.119 1.00 19.69 C </line>
<line>ATOM 1465 CA VAL B 54 13.377 49.168 4.739 1.00 18.21 C </line>
<line>ATOM 1472 CA MET B 55 12.334 48.382 8.298 1.00 21.17 C </line>
<line>ATOM 1480 CA GLY B 56 9.510 50.957 8.258 1.00 24.37 C </line>
<line>ATOM 1484 CA ASN B 57 8.226 49.961 4.781 1.00 20.94 C </line>
<line>ATOM 1492 CA PRO B 58 4.656 48.664 5.142 1.00 20.99 C </line>
<line>ATOM 1499 CA LYS B 59 5.070 46.205 2.252 1.00 19.22 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA ASP PRO THR SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.92 8.65 7.90 11.60 11.81 9.28 10.86 14.19 13.90 13.26 11.00 7.57 6.62 3.79 </line>
<line>GLY CA 8.30 9.71 8.04 11.40 12.15 9.12 9.40 13.12 13.13 11.56 8.81 6.27 3.78 </line>
<line>ASP CA 9.63 9.89 6.98 9.37 10.04 6.78 6.09 9.84 10.00 8.04 5.59 3.81 </line>
<line>LEU CA 10.37 10.96 7.58 9.30 8.47 4.68 5.54 8.47 7.30 5.85 3.80 </line>
<line>SER CA 13.92 13.97 10.33 11.12 10.39 6.96 6.11 8.35 7.00 3.79 </line>
<line>THR CA 14.80 14.16 10.34 9.79 8.60 6.17 4.97 5.38 3.81 </line>
<line>PRO CA 14.17 13.35 9.76 8.39 6.05 5.04 5.40 3.82 </line>
<line>ASP CA 13.47 11.67 8.26 5.86 5.16 5.42 3.82 </line>
<line>ALA CA 10.96 9.57 5.82 5.25 5.64 3.81 </line>
<line>VAL CA 9.16 8.74 5.21 5.53 3.79 </line>
<line>MET CA 9.70 8.31 5.63 3.82 </line>
<line>GLY CA 8.85 6.21 3.84 </line>
<line>ASN CA 5.52 3.82 </line>
<line>PRO CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 229</line>
<line>GLY CA 190</line>
<line>ASP CA 197</line>
<line>LEU CA 251</line>
<line>SER CA 188</line>
<line>THR CA 168</line>
<line>PRO CA 216</line>
<line>ASP CA 182</line>
<line>ALA CA 208</line>
<line>VAL CA 293</line>
<line>MET CA 286</line>
<line>GLY CA 230</line>
<line>ASN CA 254</line>
<line>PRO CA 233</line>
<line>LYS CA 255</line>
</n14>
</entryChain>
<parallel>
<x>-36.26900100708008</x>
<y>-17.264999389648438</y>
<z>11.635000228881836</z>
</parallel>
<rotation>
<x>0.8640000224113464</x>
<y>-0.4959999918937683</y>
<z>0.09300000220537186</z>
<x>-0.4359999895095825</x>
<y>-0.8270000219345093</y>
<z>-0.3540000021457672</z>
<x>0.25200000405311584</x>
<y>0.26499998569488525</y>
<z>-0.9309999942779541</z>
</rotation>
<rmsd>2.070375919342041</rmsd>
<dmax>4.741669178009033</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>VNLQA-FTPVT</sequence>
<secondary-structure>HH - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 879 CA VAL A 112 -8.054 35.963 3.011 1.00 25.97 C </line>
<line>ATOM 886 CA ASN A 113 -9.619 39.173 1.697 1.00 26.03 C </line>
<line>ATOM 894 CA LEU A 114 -6.786 41.586 0.910 1.00 32.55 C </line>
<line>ATOM 902 CA GLN A 115 -5.140 41.605 -2.525 1.00 30.61 C </line>
<line>ATOM 911 CA ALA A 116 -1.770 41.378 -0.775 1.00 29.83 C </line>
<line>ATOM 916 CA PHE A 117 -0.679 40.831 2.845 1.00 23.89 C </line>
<line>ATOM 927 CA THR A 118 3.117 41.051 3.163 1.00 21.42 C </line>
<line>ATOM 934 CA PRO A 119 5.000 40.423 6.446 1.00 22.91 C </line>
<line>ATOM 941 CA VAL A 120 5.477 44.204 6.800 1.00 23.89 C </line>
<line>ATOM 948 CA THR A 121 1.744 44.956 6.499 1.00 23.03 C </line>
</atom-coordinate>
<distance-map>
<line> THR VAL PRO THR PHE ALA GLN LEU ASN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.75 16.29 14.22 12.28 8.84 9.12 8.42 6.14 3.81 </line>
<line>ASN CA 13.62 16.71 15.42 12.96 9.16 8.52 6.62 3.80 </line>
<line>LEU CA 10.74 13.85 13.07 10.17 6.45 5.30 3.81 </line>
<line>GLN CA 11.83 14.37 13.59 10.04 7.02 3.80 </line>
<line>ALA CA 8.84 10.86 9.94 6.28 3.82 </line>
<line>PHE CA 6.02 8.06 6.74 3.82 </line>
<line>THR CA 5.32 5.36 3.84 </line>
<line>PRO CA 5.58 3.83 </line>
<line>VAL CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 224</line>
<line>ASN CA 236</line>
<line>LEU CA 246</line>
<line>GLN CA 155</line>
<line>ALA CA 177</line>
<line>PHE CA 216</line>
<line>THR CA 177</line>
<line>PRO CA 167</line>
<line>VAL CA 199</line>
<line>THR CA 278</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2DN1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2DN1B</entryIDChain>
<sequence>HHFGKEFTPPV</sequence>
<secondary-structure>HHHGGG HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1931 CA HIS B 116 17.758 39.579 19.813 1.00 13.54 C </line>
<line>ATOM 1941 CA HIS B 117 14.145 39.403 21.046 1.00 15.11 C </line>
<line>ATOM 1951 CA PHE B 118 14.598 36.640 23.646 1.00 15.34 C </line>
<line>ATOM 1962 CA GLY B 119 18.156 37.348 24.813 1.00 15.36 C </line>
<line>ATOM 1966 CA LYS B 120 19.437 34.872 27.378 1.00 18.65 C </line>
<line>ATOM 1975 CA GLU B 121 16.302 32.724 26.927 1.00 16.08 C </line>
<line>ATOM 1984 CA PHE B 122 17.629 31.920 23.462 1.00 14.08 C </line>
<line>ATOM 1995 CA THR B 123 20.158 29.502 24.904 1.00 14.78 C </line>
<line>ATOM 2002 CA PRO B 124 22.714 27.518 22.864 1.00 12.54 C </line>
<line>ATOM 2009 CA PRO B 125 20.434 24.413 22.977 1.00 13.40 C </line>
<line>ATOM 2016 CA VAL B 126 17.392 26.405 21.969 1.00 13.35 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO PRO THR PHE GLU LYS GLY PHE HIS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 13.35 15.72 13.39 11.54 8.48 9.99 9.07 5.49 5.77 3.82 </line>
<line>HIS CA 13.43 16.37 14.76 12.21 8.60 9.16 9.41 5.87 3.82 </line>
<line>PHE CA 10.74 13.56 12.23 9.13 5.61 5.39 6.36 3.81 </line>
<line>GLY CA 11.33 13.26 11.01 8.10 5.62 5.41 3.79 </line>
<line>LYS CA 10.25 11.39 9.23 5.96 5.23 3.83 </line>
<line>GLU CA 8.11 10.09 9.20 5.42 3.80 </line>
<line>PHE CA 5.72 8.03 6.75 3.78 </line>
<line>THR CA 5.08 5.45 3.83 </line>
<line>PRO CA 5.51 3.85 </line>
<line>PRO CA 3.77 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>HIS CA 240</line>
<line>HIS CA 257</line>
<line>PHE CA 252</line>
<line>GLY CA 187</line>
<line>LYS CA 154</line>
<line>GLU CA 211</line>
<line>PHE CA 265</line>
<line>THR CA 213</line>
<line>PRO CA 196</line>
<line>PRO CA 227</line>
<line>VAL CA 304</line>
</n14>
</entryChain>
<parallel>
<x>-21.06599998474121</x>
<y>5.6529998779296875</y>
<z>-21.643999099731445</z>
</parallel>
<rotation>
<x>0.6629999876022339</x>
<y>-0.7089999914169312</y>
<z>-0.23899999260902405</z>
<x>-0.6809999942779541</x>
<y>-0.4390000104904175</y>
<z>-0.5870000123977661</z>
<x>0.3109999895095825</x>
<y>0.5519999861717224</y>
<z>-0.7739999890327454</z>
</rotation>
<rmsd>1.3810420036315918</rmsd>
<dmax>2.6569650173187256</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2DN1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2DN1B</entryIDChain>
<sequence>LWGKV--NVDEV</sequence>
<secondary-structure>HGGG -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1148 CA LEU B 14 9.617 29.861 22.421 1.00 18.42 C </line>
<line>ATOM 1156 CA TRP B 15 7.415 30.210 19.354 1.00 19.38 C </line>
<line>ATOM 1170 CA GLY B 16 4.291 30.591 21.507 1.00 22.29 C </line>
<line>ATOM 1174 CA LYS B 17 5.799 33.878 22.681 1.00 22.05 C </line>
<line>ATOM 1183 CA VAL B 18 6.679 35.264 19.226 1.00 18.97 C </line>
<line>ATOM 1190 CA ASN B 19 4.844 38.336 17.895 1.00 19.11 C </line>
<line>ATOM 1198 CA VAL B 20 3.762 36.915 14.534 1.00 20.31 C </line>
<line>ATOM 1205 CA ASP B 21 2.756 40.357 13.249 1.00 19.54 C </line>
<line>ATOM 1213 CA GLU B 22 6.257 41.673 13.752 1.00 19.56 C </line>
<line>ATOM 1222 CA VAL B 23 9.005 39.096 13.658 1.00 16.00 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU ASP VAL ASN VAL LYS GLY TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.75 15.03 15.54 12.09 10.73 6.93 5.55 5.45 3.79 </line>
<line>TRP CA 10.67 12.81 12.73 9.03 8.65 5.11 5.21 3.81 </line>
<line>GLY CA 12.50 13.67 12.88 9.43 8.56 5.72 3.80 </line>
<line>LYS CA 10.91 11.86 11.84 8.93 6.61 3.83 </line>
<line>VAL CA 7.15 8.44 8.78 5.77 3.82 </line>
<line>ASN CA 5.99 5.50 5.48 3.81 </line>
<line>VAL CA 5.75 5.43 3.81 </line>
<line>ASP CA 6.39 3.77 </line>
<line>GLU CA 3.77 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 311</line>
<line>TRP CA 339</line>
<line>GLY CA 224</line>
<line>LYS CA 221</line>
<line>VAL CA 300</line>
<line>ASN CA 256</line>
<line>VAL CA 272</line>
<line>ASP CA 240</line>
<line>GLU CA 301</line>
<line>VAL CA 367</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>LGNLIKANAEAW</sequence>
<secondary-structure>HHHHHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 95 CA LEU A 13 -6.068 50.091 5.799 1.00 40.44 C </line>
<line>ATOM 103 CA GLY A 14 -8.957 51.825 7.586 1.00 40.10 C </line>
<line>ATOM 107 CA ASN A 15 -10.503 52.913 4.296 1.00 40.23 C </line>
<line>ATOM 115 CA LEU A 16 -10.736 49.252 3.222 1.00 34.40 C </line>
<line>ATOM 123 CA ILE A 17 -12.097 48.035 6.587 1.00 30.64 C </line>
<line>ATOM 131 CA LYS A 18 -14.867 50.642 6.713 1.00 31.98 C </line>
<line>ATOM 140 CA ALA A 19 -16.031 49.625 3.205 1.00 30.44 C </line>
<line>ATOM 145 CA ASN A 20 -16.104 45.897 3.999 1.00 28.28 C </line>
<line>ATOM 153 CA ALA A 21 -17.049 46.216 7.681 1.00 28.58 C </line>
<line>ATOM 158 CA GLU A 22 -19.982 43.773 7.699 1.00 26.46 C </line>
<line>ATOM 167 CA ALA A 23 -18.508 41.026 5.514 1.00 27.62 C </line>
<line>ATOM 172 CA TRP A 24 -15.120 41.115 7.276 1.00 29.23 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLU ALA ASN ALA LYS ILE LEU ASN GLY LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.83 15.40 15.40 11.80 11.03 10.31 8.86 6.42 5.40 5.47 3.81 </line>
<line>GLY CA 12.36 14.56 13.65 9.85 9.95 8.61 6.09 5.02 5.37 3.79 </line>
<line>ASN CA 13.01 14.38 13.60 9.96 8.98 6.52 5.48 5.62 3.82 </line>
<line>LEU CA 10.09 11.55 11.64 8.30 6.38 5.31 5.58 3.83 </line>
<line>ILE CA 7.58 9.56 9.03 5.39 5.23 5.43 3.81 </line>
<line>LYS CA 9.55 10.35 8.62 5.03 5.60 3.83 </line>
<line>ALA CA 9.48 9.24 8.37 5.72 3.81 </line>
<line>ASN CA 5.88 5.64 5.77 3.81 </line>
<line>ALA CA 5.47 5.81 3.82 </line>
<line>GLU CA 5.56 3.81 </line>
<line>ALA CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>LEU CA 369</line>
<line>GLY CA 330</line>
<line>ASN CA 236</line>
<line>LEU CA 291</line>
<line>ILE CA 364</line>
<line>LYS CA 274</line>
<line>ALA CA 221</line>
<line>ASN CA 272</line>
<line>ALA CA 318</line>
<line>GLU CA 303</line>
<line>ALA CA 312</line>
<line>TRP CA 373</line>
</n14>
</entryChain>
<parallel>
<x>18.332000732421875</x>
<y>-14.074000358581543</y>
<z>13.0</z>
</parallel>
<rotation>
<x>0.7730000019073486</x>
<y>-0.414000004529953</y>
<z>0.47999998927116394</z>
<x>-0.5429999828338623</x>
<y>-0.8230000138282776</y>
<z>0.16599999368190765</z>
<x>0.3269999921321869</x>
<y>-0.3889999985694885</y>
<z>-0.8610000014305115</z>
</rotation>
<rmsd>0.8192600011825562</rmsd>
<dmax>1.2629339694976807</dmax>
</indel>