NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG8A-2ZLWD
confEVID 1CG8A-2ZLWD
pdbIDA 1CG8
pdbIDB 2ZLW
pdbChainA A
pdbChainB D
identity 0.340099990367889
indelSize 3
alignment <alignment>
<seq1>-VLSSQNKKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFSGFE-----ACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKHGENLLVDPHNFHLFADCIVVTLAVNLQ-AFTPVTHCAVDKFLELVAYELSSCYR</seq1>
<seq2>VQLSGEEKAAVLALWDKV--NEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH GGGG ----- HHHHHHHHHHHHHHHHGGG HHHHHHHHHHIIIII HHHHHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH -- HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>FSGFE-----ACNEQ</sequence>
<secondary-structure> ----- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 355 CA PHE A 46 -27.284 35.396 19.710 1.00 42.88 C </line>
<line>ATOM 366 CA SER A 47 -29.269 32.564 18.118 1.00 47.58 C </line>
<line>ATOM 372 CA GLY A 48 -26.542 31.383 15.762 1.00 41.25 C </line>
<line>ATOM 376 CA PHE A 49 -22.794 31.852 15.311 1.00 36.25 C </line>
<line>ATOM 387 CA GLU A 50 -22.258 31.320 11.566 1.00 36.49 C </line>
<line>ATOM 396 CA ALA A 51 -21.039 34.248 9.422 1.00 36.72 C </line>
<line>ATOM 401 CA CYS A 52 -24.443 34.247 7.685 1.00 45.39 C </line>
<line>ATOM 407 CA ASN A 53 -26.345 34.831 10.938 1.00 44.70 C </line>
<line>ATOM 415 CA GLU A 54 -27.858 38.343 10.895 1.00 42.86 C </line>
<line>ATOM 424 CA GLN A 55 -26.912 38.968 14.531 1.00 35.19 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLU ASN CYS ALA GLU PHE GLY SER PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 6.30 9.31 8.84 12.41 12.09 10.40 7.22 5.68 3.81 </line>
<line>SER CA 7.71 9.36 8.08 11.62 12.09 9.68 7.09 3.79 </line>
<line>GLY CA 7.69 8.59 5.93 8.82 8.87 6.00 3.80 </line>
<line>PHE CA 8.26 9.34 6.37 8.16 6.60 3.82 </line>
<line>GLU CA 9.43 9.01 5.42 5.33 3.83 </line>
<line>ALA CA 9.10 8.09 5.55 3.82 </line>
<line>CYS CA 8.67 6.22 3.81 </line>
<line>ASN CA 5.51 3.82 </line>
<line>GLU CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>PHE CA 229</line>
<line>SER CA 184</line>
<line>GLY CA 234</line>
<line>PHE CA 289</line>
<line>GLU CA 259</line>
<line>ALA CA 293</line>
<line>CYS CA 210</line>
<line>ASN CA 230</line>
<line>GLU CA 218</line>
<line>GLN CA 251</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>FGDLSNPGAVMGNPK</sequence>
<secondary-structure>G HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3615 CA PHE D 45 -27.858 0.821 46.378 1.00 20.57 C </line>
<line>ATOM 3626 CA GLY D 46 -28.380 -2.497 48.171 1.00 21.29 C </line>
<line>ATOM 3630 CA ASP D 47 -29.141 -5.668 46.165 1.00 29.86 C </line>
<line>ATOM 3638 CA LEU D 48 -27.704 -5.763 42.624 1.00 16.24 C </line>
<line>ATOM 3646 CA SER D 49 -27.448 -9.565 42.377 1.00 24.16 C </line>
<line>ATOM 3652 CA ASN D 50 -29.616 -10.625 39.438 1.00 41.54 C </line>
<line>ATOM 3660 CA PRO D 51 -31.076 -8.686 36.440 1.00 34.87 C </line>
<line>ATOM 3667 CA GLY D 52 -34.703 -8.259 37.615 1.00 29.21 C </line>
<line>ATOM 3671 CA ALA D 53 -33.702 -7.001 41.054 1.00 25.43 C </line>
<line>ATOM 3676 CA VAL D 54 -31.347 -4.365 39.528 1.00 25.94 C </line>
<line>ATOM 3683 CA MET D 55 -33.964 -2.754 37.187 1.00 29.82 C </line>
<line>ATOM 3691 CA GLY D 56 -36.655 -2.681 39.881 1.00 24.63 C </line>
<line>ATOM 3695 CA ASN D 57 -34.073 -1.079 42.204 1.00 26.57 C </line>
<line>ATOM 3703 CA PRO D 58 -35.338 2.411 43.238 1.00 16.40 C </line>
<line>ATOM 3710 CA LYS D 59 -31.796 3.656 43.733 1.00 33.64 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA GLY PRO ASN SER LEU ASP GLY PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.53 8.27 7.72 11.48 11.60 9.27 11.12 14.36 14.12 13.50 11.14 7.58 6.62 3.81 </line>
<line>GLY CA 8.32 9.84 8.37 11.71 12.32 9.33 9.96 13.59 13.53 11.99 9.19 6.47 3.83 </line>
<line>ASP CA 10.00 10.59 7.81 10.24 10.60 7.11 6.98 10.52 10.36 8.37 5.69 3.82 </line>
<line>LEU CA 10.33 11.20 7.92 9.86 8.82 4.98 6.32 8.96 7.63 6.12 3.82 </line>
<line>SER CA 13.98 14.37 10.77 11.76 10.76 7.10 6.89 8.78 7.01 3.80 </line>
<line>ASN CA 15.07 14.73 10.89 10.62 9.27 6.50 5.70 5.90 3.86 </line>
<line>PRO CA 14.35 13.69 10.00 8.89 6.64 5.32 5.57 3.84 </line>
<line>GLY CA 13.71 12.08 8.54 6.33 5.57 5.49 3.80 </line>
<line>ALA CA 11.15 9.80 6.04 5.36 5.75 3.85 </line>
<line>VAL CA 9.07 8.70 5.04 5.58 3.86 </line>
<line>MET CA 9.41 8.07 5.29 3.81 </line>
<line>GLY CA 8.87 6.24 3.82 </line>
<line>ASN CA 5.47 3.85 </line>
<line>PRO CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>PHE CA 225</line>
<line>GLY CA 186</line>
<line>ASP CA 194</line>
<line>LEU CA 255</line>
<line>SER CA 192</line>
<line>ASN CA 165</line>
<line>PRO CA 213</line>
<line>GLY CA 173</line>
<line>ALA CA 191</line>
<line>VAL CA 286</line>
<line>MET CA 285</line>
<line>GLY CA 230</line>
<line>ASN CA 256</line>
<line>PRO CA 220</line>
<line>LYS CA 253</line>
</n14>
</entryChain>
<parallel>
<x>5.656000137329102</x>
<y>36.87799835205078</y>
<z>-29.55900001525879</z>
</parallel>
<rotation>
<x>0.46799999475479126</x>
<y>-0.07599999755620956</y>
<z>0.8809999823570251</z>
<x>-0.24699999392032623</x>
<y>0.9449999928474426</y>
<z>0.21299999952316284</z>
<x>-0.8489999771118164</x>
<y>-0.31700000166893005</y>
<z>0.4230000078678131</z>
</rotation>
<rmsd>2.246603012084961</rmsd>
<dmax>4.987466812133789</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>AVNLQ-AFTPV</sequence>
<secondary-structure>HHH - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 874 CA ALA A 111 -5.128 37.726 4.723 1.00 24.17 C </line>
<line>ATOM 879 CA VAL A 112 -8.054 35.963 3.011 1.00 25.97 C </line>
<line>ATOM 886 CA ASN A 113 -9.619 39.173 1.697 1.00 26.03 C </line>
<line>ATOM 894 CA LEU A 114 -6.786 41.586 0.910 1.00 32.55 C </line>
<line>ATOM 902 CA GLN A 115 -5.140 41.605 -2.525 1.00 30.61 C </line>
<line>ATOM 911 CA ALA A 116 -1.770 41.378 -0.775 1.00 29.83 C </line>
<line>ATOM 916 CA PHE A 117 -0.679 40.831 2.845 1.00 23.89 C </line>
<line>ATOM 927 CA THR A 118 3.117 41.051 3.163 1.00 21.42 C </line>
<line>ATOM 934 CA PRO A 119 5.000 40.423 6.446 1.00 22.91 C </line>
<line>ATOM 941 CA VAL A 120 5.477 44.204 6.800 1.00 23.89 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO THR PHE ALA GLN LEU ASN VAL ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.60 10.62 9.03 5.74 7.41 8.22 5.67 5.61 3.82 </line>
<line>VAL CA 16.29 14.22 12.28 8.84 9.12 8.42 6.14 3.81 </line>
<line>ASN CA 16.71 15.42 12.96 9.16 8.52 6.62 3.80 </line>
<line>LEU CA 13.85 13.07 10.17 6.45 5.30 3.81 </line>
<line>GLN CA 14.37 13.59 10.04 7.02 3.80 </line>
<line>ALA CA 10.86 9.94 6.28 3.82 </line>
<line>PHE CA 8.06 6.74 3.82 </line>
<line>THR CA 5.36 3.84 </line>
<line>PRO CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 262</line>
<line>VAL CA 224</line>
<line>ASN CA 236</line>
<line>LEU CA 246</line>
<line>GLN CA 155</line>
<line>ALA CA 177</line>
<line>PHE CA 216</line>
<line>THR CA 177</line>
<line>PRO CA 167</line>
<line>VAL CA 199</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>ARHFGKDFTPE</sequence>
<secondary-structure>HHHHGGG HH</secondary-structure>
<atom-coordinate>
<line>ATOM 4142 CA ALA D 115 -32.549 2.154 19.812 1.00 13.93 C </line>
<line>ATOM 4147 CA ARG D 116 -34.833 -0.147 21.767 1.00 18.29 C </line>
<line>ATOM 4158 CA HIS D 117 -37.236 2.706 22.583 1.00 18.46 C </line>
<line>ATOM 4168 CA PHE D 118 -37.472 4.394 19.173 1.00 18.14 C </line>
<line>ATOM 4179 CA GLY D 119 -36.998 1.425 16.871 1.00 13.31 C </line>
<line>ATOM 4183 CA LYS D 120 -36.803 2.374 13.213 1.00 16.02 C </line>
<line>ATOM 4192 CA ASP D 121 -36.902 6.089 13.964 1.00 30.26 C </line>
<line>ATOM 4200 CA PHE D 122 -33.504 5.691 15.521 1.00 15.79 C </line>
<line>ATOM 4211 CA THR D 123 -32.193 5.421 11.974 1.00 21.39 C </line>
<line>ATOM 4218 CA PRO D 124 -28.585 4.661 11.134 1.00 15.99 C </line>
<line>ATOM 4225 CA GLU D 125 -28.100 8.353 10.285 1.00 23.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO THR PHE ASP LYS GLY PHE HIS ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.21 9.86 8.50 5.64 8.28 7.85 5.38 5.45 5.47 3.79 </line>
<line>ARG CA 15.79 13.24 11.57 8.65 10.20 9.13 5.58 5.86 3.82 </line>
<line>HIS CA 16.33 14.48 12.06 8.53 9.27 9.39 5.86 3.81 </line>
<line>PHE CA 13.51 11.99 8.99 5.55 5.51 6.33 3.79 </line>
<line>GLY CA 13.06 10.68 7.94 5.68 5.50 3.78 </line>
<line>LYS CA 10.96 8.78 5.66 5.22 3.79 </line>
<line>ASP CA 9.80 8.90 5.16 3.76 </line>
<line>PHE CA 7.98 6.67 3.79 </line>
<line>THR CA 5.31 3.78 </line>
<line>PRO CA 3.82 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ALA CA 292</line>
<line>ARG CA 248</line>
<line>HIS CA 259</line>
<line>PHE CA 257</line>
<line>GLY CA 189</line>
<line>LYS CA 155</line>
<line>ASP CA 202</line>
<line>PHE CA 264</line>
<line>THR CA 208</line>
<line>PRO CA 187</line>
<line>GLU CA 210</line>
</n14>
</entryChain>
<parallel>
<x>30.95400047302246</x>
<y>36.446998596191406</y>
<z>-16.07699966430664</z>
</parallel>
<rotation>
<x>0.4399999976158142</x>
<y>-0.4410000145435333</y>
<z>0.7820000052452087</z>
<x>0.15299999713897705</x>
<y>0.8949999809265137</y>
<z>0.4189999997615814</z>
<x>-0.8849999904632568</x>
<y>-0.06499999761581421</y>
<z>0.460999995470047</z>
</rotation>
<rmsd>1.4783309698104858</rmsd>
<dmax>3.120655059814453</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>LWDKV--NEEEV</sequence>
<secondary-structure>H -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3356 CA LEU D 14 -35.699 13.034 19.487 1.00 17.31 C </line>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU GLU GLU ASN VAL LYS ASP TRP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.60 14.60 15.52 12.19 10.17 6.46 5.35 5.31 3.83 </line>
<line>TRP CA 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.30 5.54 3.81 </line>
<line>GLU CA 5.65 3.79 </line>
<line>GLU CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 322</line>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CG8A</entryIDChain>
<sequence>LGNLIKANAEAW</sequence>
<secondary-structure>HHHHHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 95 CA LEU A 13 -6.068 50.091 5.799 1.00 40.44 C </line>
<line>ATOM 103 CA GLY A 14 -8.957 51.825 7.586 1.00 40.10 C </line>
<line>ATOM 107 CA ASN A 15 -10.503 52.913 4.296 1.00 40.23 C </line>
<line>ATOM 115 CA LEU A 16 -10.736 49.252 3.222 1.00 34.40 C </line>
<line>ATOM 123 CA ILE A 17 -12.097 48.035 6.587 1.00 30.64 C </line>
<line>ATOM 131 CA LYS A 18 -14.867 50.642 6.713 1.00 31.98 C </line>
<line>ATOM 140 CA ALA A 19 -16.031 49.625 3.205 1.00 30.44 C </line>
<line>ATOM 145 CA ASN A 20 -16.104 45.897 3.999 1.00 28.28 C </line>
<line>ATOM 153 CA ALA A 21 -17.049 46.216 7.681 1.00 28.58 C </line>
<line>ATOM 158 CA GLU A 22 -19.982 43.773 7.699 1.00 26.46 C </line>
<line>ATOM 167 CA ALA A 23 -18.508 41.026 5.514 1.00 27.62 C </line>
<line>ATOM 172 CA TRP A 24 -15.120 41.115 7.276 1.00 29.23 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLU ALA ASN ALA LYS ILE LEU ASN GLY LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.83 15.40 15.40 11.80 11.03 10.31 8.86 6.42 5.40 5.47 3.81 </line>
<line>GLY CA 12.36 14.56 13.65 9.85 9.95 8.61 6.09 5.02 5.37 3.79 </line>
<line>ASN CA 13.01 14.38 13.60 9.96 8.98 6.52 5.48 5.62 3.82 </line>
<line>LEU CA 10.09 11.55 11.64 8.30 6.38 5.31 5.58 3.83 </line>
<line>ILE CA 7.58 9.56 9.03 5.39 5.23 5.43 3.81 </line>
<line>LYS CA 9.55 10.35 8.62 5.03 5.60 3.83 </line>
<line>ALA CA 9.48 9.24 8.37 5.72 3.81 </line>
<line>ASN CA 5.88 5.64 5.77 3.81 </line>
<line>ALA CA 5.47 5.81 3.82 </line>
<line>GLU CA 5.56 3.81 </line>
<line>ALA CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>LEU CA 369</line>
<line>GLY CA 330</line>
<line>ASN CA 236</line>
<line>LEU CA 291</line>
<line>ILE CA 364</line>
<line>LYS CA 274</line>
<line>ALA CA 221</line>
<line>ASN CA 272</line>
<line>ALA CA 318</line>
<line>GLU CA 303</line>
<line>ALA CA 312</line>
<line>TRP CA 373</line>
</n14>
</entryChain>
<parallel>
<x>-24.197999954223633</x>
<y>-36.53099822998047</y>
<z>20.270999908447266</z>
</parallel>
<rotation>
<x>0.19699999690055847</x>
<y>-0.1289999932050705</y>
<z>-0.972000002861023</z>
<x>-0.04399999976158142</x>
<y>0.9890000224113464</y>
<z>-0.14000000059604645</z>
<x>0.9789999723434448</x>
<y>0.07000000029802322</y>
<z>0.1889999955892563</z>
</rotation>
<rmsd>0.6715409755706787</rmsd>
<dmax>1.2047909498214722</dmax>
</indel>