NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG8B-2QU0A
confEVID 1CG8B-2QU0A
pdbIDA 1CG8
pdbIDB 2QU0
pdbChainA B
pdbChainB A
identity 0.328700006008148
indelSize 3
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDV--DHKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>-VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHF--DLSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR</seq2>
<ss_1> HHHHHHHHHHHHH -- HHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHHH HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>- HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG -- HHHHHHHHHHHHHHHHHHH GGG HHHHHIIIII HHHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG8B</entryIDChain>
<sequence>VWKDV--DHKQI</sequence>
<secondary-structure>HHHH -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1228 CA VAL B 14 -3.336 20.201 2.849 1.00 24.20 C </line>
<line>ATOM 1235 CA TRP B 15 0.066 18.577 3.366 1.00 23.59 C </line>
<line>ATOM 1249 CA LYS B 16 -0.390 16.682 0.070 1.00 30.14 C </line>
<line>ATOM 1258 CA ASP B 17 -1.428 19.865 -1.704 1.00 27.34 C </line>
<line>ATOM 1266 CA VAL B 18 1.090 22.501 -0.590 1.00 29.19 C </line>
<line>ATOM 1273 CA ASP B 19 4.810 22.802 -1.281 1.00 27.78 C </line>
<line>ATOM 1281 CA HIS B 20 6.181 21.864 2.173 1.00 33.67 C </line>
<line>ATOM 1291 CA LYS B 21 9.425 23.800 1.960 1.00 33.46 C </line>
<line>ATOM 1300 CA GLN B 22 8.247 26.964 0.244 1.00 28.74 C </line>
<line>ATOM 1309 CA ILE B 23 5.303 27.506 2.604 1.00 25.68 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLN LYS HIS ASP VAL ASP LYS TRP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.32 13.66 13.29 9.68 9.50 6.06 4.95 5.37 3.81 </line>
<line>TRP CA 10.38 12.13 10.81 7.04 7.87 5.67 5.44 3.83 </line>
<line>LYS CA 12.49 13.43 12.27 8.63 8.14 6.04 3.79 </line>
<line>ASP CA 11.06 12.16 12.11 8.77 6.91 3.81 </line>
<line>VAL CA 7.28 8.48 8.81 5.83 3.80 </line>
<line>ASP CA 6.12 5.61 5.73 3.83 </line>
<line>HIS CA 5.73 5.83 3.78 </line>
<line>LYS CA 5.58 3.79 </line>
<line>GLN CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 356</line>
<line>TRP CA 332</line>
<line>LYS CA 227</line>
<line>ASP CA 228</line>
<line>VAL CA 290</line>
<line>ASP CA 269</line>
<line>HIS CA 335</line>
<line>LYS CA 321</line>
<line>GLN CA 334</line>
<line>ILE CA 383</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>AWGKVGGNAGAY</sequence>
<secondary-structure>HHHHHGGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 85 CA ALA A 13 -9.530 33.909 66.293 1.00 32.75 C </line>
<line>ATOM 90 CA TRP A 14 -10.884 35.550 63.142 1.00 32.76 C </line>
<line>ATOM 104 CA GLY A 15 -14.262 35.849 64.884 1.00 33.39 C </line>
<line>ATOM 108 CA LYS A 16 -12.241 37.581 67.544 1.00 35.75 C </line>
<line>ATOM 117 CA VAL A 17 -10.872 40.039 64.919 1.00 34.15 C </line>
<line>ATOM 124 CA GLY A 18 -14.523 41.006 64.279 1.00 34.56 C </line>
<line>ATOM 128 CA GLY A 19 -15.280 44.426 62.760 1.00 35.42 C </line>
<line>ATOM 132 CA ASN A 20 -11.582 45.331 62.859 1.00 35.25 C </line>
<line>ATOM 140 CA ALA A 21 -10.412 43.174 59.918 1.00 33.09 C </line>
<line>ATOM 145 CA GLY A 22 -10.416 46.212 57.611 1.00 31.17 C </line>
<line>ATOM 149 CA ALA A 23 -8.097 48.229 59.873 1.00 29.78 C </line>
<line>ATOM 154 CA TYR A 24 -5.747 45.225 60.344 1.00 27.91 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA GLY ALA ASN GLY GLY VAL LYS GLY TRP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 13.33 15.76 15.08 11.28 12.10 12.50 8.91 6.42 4.73 5.30 3.80 </line>
<line>TRP CA 11.31 13.39 12.02 8.29 9.81 9.91 6.66 4.83 5.03 3.81 </line>
<line>GLY CA 13.45 14.71 13.23 9.65 10.06 8.89 5.20 5.39 3.76 </line>
<line>LYS CA 12.35 13.76 13.28 9.63 9.08 8.89 5.25 3.85 </line>
<line>VAL CA 8.61 10.01 9.58 5.92 5.72 6.58 3.83 </line>
<line>GLY CA 10.50 10.62 9.40 6.37 5.42 3.82 </line>
<line>GLY CA 9.87 8.63 7.30 5.77 3.81 </line>
<line>ASN CA 6.35 5.43 5.45 3.83 </line>
<line>ALA CA 5.11 5.56 3.81 </line>
<line>GLY CA 5.50 3.82 </line>
<line>ALA CA 3.84 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 344</line>
<line>TRP CA 369</line>
<line>GLY CA 239</line>
<line>LYS CA 250</line>
<line>VAL CA 307</line>
<line>GLY CA 210</line>
<line>GLY CA 180</line>
<line>ASN CA 242</line>
<line>ALA CA 321</line>
<line>GLY CA 281</line>
<line>ALA CA 296</line>
<line>TYR CA 359</line>
</n14>
</entryChain>
<parallel>
<x>13.32699966430664</x>
<y>-18.91900062561035</y>
<z>-62.54100036621094</z>
</parallel>
<rotation>
<x>-0.2590000033378601</x>
<y>0.7850000262260437</y>
<z>0.5619999766349792</z>
<x>0.6570000052452087</x>
<y>0.5699999928474426</y>
<z>-0.49399998784065247</z>
<x>-0.7080000042915344</x>
<y>0.2409999966621399</y>
<z>-0.6629999876022339</z>
</rotation>
<rmsd>0.966825008392334</rmsd>
<dmax>1.6831129789352417</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG8B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 14.492 19.570 24.845 1.00 30.49 C </line>
<line>ATOM 1817 CA LYS B 87 16.637 20.780 21.960 1.00 29.96 C </line>
<line>ATOM 1826 CA HIS B 88 14.683 24.056 21.821 1.00 23.71 C </line>
<line>ATOM 1836 CA GLN B 89 14.908 24.691 25.571 1.00 25.58 C </line>
<line>ATOM 1845 CA GLU B 90 18.682 24.157 25.453 1.00 32.78 C </line>
<line>ATOM 1854 CA ILE B 91 18.959 26.749 22.678 1.00 28.63 C </line>
<line>ATOM 1862 CA GLY B 92 16.893 29.152 24.801 1.00 24.28 C </line>
<line>ATOM 1866 CA VAL B 93 13.595 29.595 22.932 1.00 24.99 C </line>
<line>ATOM 1873 CA ASP B 94 10.495 30.755 24.853 1.00 22.94 C </line>
<line>ATOM 1881 CA THR B 95 7.595 28.266 24.681 1.00 27.18 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.10 11.88 10.25 9.88 8.73 6.24 5.19 5.41 3.79 </line>
<line>LYS CA 12.05 12.07 9.38 8.84 6.44 5.27 5.60 3.82 </line>
<line>HIS CA 8.73 8.46 5.75 6.30 5.13 5.40 3.81 </line>
<line>GLN CA 8.19 7.53 5.72 4.94 5.39 3.81 </line>
<line>GLU CA 11.85 10.53 7.86 5.35 3.81 </line>
<line>ILE CA 11.64 9.61 6.08 3.81 </line>
<line>GLY CA 9.34 6.60 3.82 </line>
<line>VAL CA 6.39 3.83 </line>
<line>ASP CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 224</line>
<line>LYS CA 243</line>
<line>HIS CA 306</line>
<line>GLN CA 237</line>
<line>GLU CA 194</line>
<line>ILE CA 229</line>
<line>GLY CA 228</line>
<line>VAL CA 304</line>
<line>ASP CA 274</line>
<line>THR CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>DLHAHKLRVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 615 CA ASP A 85 -6.137 34.486 38.219 1.00 36.96 C </line>
<line>ATOM 623 CA LEU A 86 -5.837 38.170 38.921 1.00 33.50 C </line>
<line>ATOM 631 CA HIS A 87 -2.750 37.835 41.066 1.00 32.68 C </line>
<line>ATOM 641 CA ALA A 88 -0.896 35.098 39.146 1.00 34.75 C </line>
<line>ATOM 646 CA HIS A 89 -1.806 35.524 35.486 1.00 37.57 C </line>
<line>ATOM 656 CA LYS A 90 -3.005 39.163 35.256 1.00 36.94 C </line>
<line>ATOM 665 CA LEU A 91 -0.752 40.905 37.826 1.00 33.66 C </line>
<line>ATOM 673 CA ARG A 92 2.187 38.476 37.699 1.00 32.53 C </line>
<line>ATOM 684 CA VAL A 93 2.861 38.861 41.461 1.00 30.56 C </line>
<line>ATOM 691 CA ASP A 94 6.025 37.084 42.684 1.00 29.10 C </line>
<line>ATOM 699 CA PRO A 95 5.058 34.246 45.052 1.00 28.38 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL ARG LEU LYS HIS ALA HIS LEU ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.12 13.21 10.52 9.25 8.39 6.36 5.23 5.36 5.55 3.76 </line>
<line>LEU CA 13.10 12.49 9.09 8.12 5.88 4.74 5.92 5.82 3.77 </line>
<line>HIS CA 9.47 8.95 5.72 6.01 4.89 5.97 6.11 3.82 </line>
<line>ALA CA 8.43 8.02 5.80 4.80 5.96 6.01 3.80 </line>
<line>HIS CA 11.84 10.75 8.28 5.44 5.96 3.84 </line>
<line>LYS CA 13.61 11.88 8.54 5.78 3.84 </line>
<line>LEU CA 11.42 9.17 5.52 3.81 </line>
<line>ARG CA 8.96 6.44 3.84 </line>
<line>VAL CA 6.25 3.83 </line>
<line>ASP CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASP CA 230</line>
<line>LEU CA 260</line>
<line>HIS CA 321</line>
<line>ALA CA 256</line>
<line>HIS CA 204</line>
<line>LYS CA 202</line>
<line>LEU CA 257</line>
<line>ARG CA 244</line>
<line>VAL CA 308</line>
<line>ASP CA 275</line>
<line>PRO CA 277</line>
</n14>
</entryChain>
<parallel>
<x>17.746999740600586</x>
<y>-12.576000213623047</y>
<z>-14.970000267028809</z>
</parallel>
<rotation>
<x>-0.08399999886751175</x>
<y>0.9350000023841858</y>
<z>0.3440000116825104</z>
<x>0.48399999737739563</x>
<y>0.3400000035762787</y>
<z>-0.8059999942779541</z>
<x>-0.8709999918937683</x>
<y>0.0989999994635582</y>
<z>-0.48100000619888306</z>
</rotation>
<rmsd>0.8489320278167725</rmsd>
<dmax>1.548691987991333</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2QU0</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2QU0A</entryIDChain>
<sequence>YFPHF--DLSHG</sequence>
<secondary-structure>G -- </secondary-structure>
<atom-coordinate>
<line>ATOM 298 CA TYR A 42 2.907 46.598 42.438 1.00 32.88 C </line>
<line>ATOM 310 CA PHE A 43 1.096 49.759 43.570 1.00 33.90 C </line>
<line>ATOM 321 CA PRO A 44 2.685 52.703 41.696 1.00 34.52 C </line>
<line>ATOM 328 CA HIS A 45 -0.863 54.031 41.338 1.00 35.24 C </line>
<line>ATOM 338 CA PHE A 46 -1.417 54.281 45.100 1.00 36.19 C </line>
<line>ATOM 349 CA ASP A 47 -0.627 57.029 47.549 1.00 38.47 C </line>
<line>ATOM 357 CA LEU A 48 1.526 54.925 49.927 1.00 40.14 C </line>
<line>ATOM 365 CA SER A 49 1.989 57.618 52.547 1.00 41.87 C </line>
<line>ATOM 371 CA HIS A 50 1.106 56.646 56.099 1.00 43.12 C </line>
<line>ATOM 381 CA GLY A 51 -2.641 56.763 56.509 1.00 41.13 C </line>
</atom-coordinate>
<distance-map>
<line> GLY HIS SER LEU ASP PHE HIS PRO PHE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 18.22 17.05 14.98 11.28 12.14 9.21 8.41 6.15 3.81 </line>
<line>PHE CA 15.18 14.30 11.96 8.20 8.46 5.39 5.20 3.83 </line>
<line>PRO CA 16.26 15.02 11.93 8.60 8.00 5.56 3.81 </line>
<line>HIS CA 15.52 15.12 12.11 8.96 6.90 3.81 </line>
<line>PHE CA 11.74 11.53 8.84 5.69 3.76 </line>
<line>ASP CA 9.19 8.73 5.67 3.84 </line>
<line>LEU CA 8.00 6.42 3.79 </line>
<line>SER CA 6.15 3.79 </line>
<line>HIS CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TYR CA 281</line>
<line>PHE CA 269</line>
<line>PRO CA 173</line>
<line>HIS CA 159</line>
<line>PHE CA 206</line>
<line>ASP CA 191</line>
<line>LEU CA 246</line>
<line>SER CA 201</line>
<line>HIS CA 197</line>
<line>GLY CA 197</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG8B</entryIDChain>
<sequence>LFSKLQGLFSAN</sequence>
<secondary-structure> GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1461 CA LEU B 41 18.874 32.646 18.391 1.00 26.66 C </line>
<line>ATOM 1469 CA PHE B 42 19.213 32.413 14.599 1.00 32.55 C </line>
<line>ATOM 1480 CA SER B 43 22.820 33.570 14.452 1.00 43.50 C </line>
<line>ATOM 1486 CA LYS B 44 23.729 30.971 11.821 1.00 40.61 C </line>
<line>ATOM 1495 CA LEU B 45 21.495 32.911 9.378 1.00 35.95 C </line>
<line>ATOM 1503 CA GLN B 46 24.000 35.789 9.504 1.00 36.83 C </line>
<line>ATOM 1512 CA GLY B 47 21.271 38.432 9.218 1.00 31.92 C </line>
<line>ATOM 1516 CA LEU B 48 19.637 36.950 6.111 1.00 29.30 C </line>
<line>ATOM 1524 CA PHE B 49 16.004 36.369 7.064 1.00 29.93 C </line>
<line>ATOM 1535 CA SER B 50 14.140 36.198 3.741 1.00 26.02 C </line>
<line>ATOM 1541 CA ALA B 51 12.358 33.103 2.372 1.00 25.32 C </line>
<line>ATOM 1546 CA ASN B 52 14.695 32.998 -0.613 1.00 34.98 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA SER PHE LEU GLY GLN LEU LYS SER PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 19.46 17.30 15.80 12.26 13.03 11.11 10.73 9.39 8.34 5.65 3.81 </line>
<line>PHE CA 15.88 14.03 12.57 9.10 9.63 8.33 7.76 5.72 5.49 3.79 </line>
<line>SER CA 17.13 15.99 14.03 10.43 9.55 7.31 5.55 5.29 3.81 </line>
<line>LYS CA 15.50 14.94 13.59 10.56 9.22 8.28 5.35 3.84 </line>
<line>LEU CA 12.09 11.52 9.83 6.89 5.52 5.53 3.82 </line>
<line>GLN CA 14.03 13.91 11.43 8.38 5.65 3.81 </line>
<line>GLY CA 13.02 12.44 9.26 6.05 3.81 </line>
<line>LEU CA 9.23 9.04 6.03 3.80 </line>
<line>PHE CA 8.49 6.78 3.81 </line>
<line>SER CA 5.43 3.82 </line>
<line>ALA CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 260</line>
<line>PHE CA 295</line>
<line>SER CA 194</line>
<line>LYS CA 184</line>
<line>LEU CA 223</line>
<line>GLN CA 162</line>
<line>GLY CA 197</line>
<line>LEU CA 224</line>
<line>PHE CA 287</line>
<line>SER CA 269</line>
<line>ALA CA 300</line>
<line>ASN CA 216</line>
</n14>
</entryChain>
<parallel>
<x>-18.57699966430664</x>
<y>19.36400032043457</y>
<z>34.82600021362305</z>
</parallel>
<rotation>
<x>-0.17299999296665192</x>
<y>0.4659999907016754</y>
<z>-0.8679999709129333</z>
<x>0.8700000047683716</x>
<y>0.4860000014305115</y>
<z>0.08799999952316284</z>
<x>0.46299999952316284</x>
<y>-0.7390000224113464</y>
<z>-0.48899999260902405</z>
</rotation>
<rmsd>1.432168960571289</rmsd>
<dmax>2.334362030029297</dmax>
</indel>