NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CG8B-2ZLWD
confEVID 1CG8B-2ZLWD
pdbIDA 1CG8
pdbIDB 2ZLW
pdbChainA B
pdbChainB D
identity 0.342500001192093
indelSize 2
alignment <alignment>
<seq1>VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFS----ANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH</seq1>
<seq2>VQLSGEEKAAVLALWDKVNEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1> HHHHHHHHHHHHH HHHHHHHHHHHHHHH GGG ---- HHHHHHHHHHHHHHHHHHH HHHH HHHHHHHHH- GGHHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG8B</entryIDChain>
<sequence>QGLFS----ANDIG</sequence>
<secondary-structure> ---- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 1503 CA GLN B 46 24.000 35.789 9.504 1.00 36.83 C </line>
<line>ATOM 1512 CA GLY B 47 21.271 38.432 9.218 1.00 31.92 C </line>
<line>ATOM 1516 CA LEU B 48 19.637 36.950 6.111 1.00 29.30 C </line>
<line>ATOM 1524 CA PHE B 49 16.004 36.369 7.064 1.00 29.93 C </line>
<line>ATOM 1535 CA SER B 50 14.140 36.198 3.741 1.00 26.02 C </line>
<line>ATOM 1541 CA ALA B 51 12.358 33.103 2.372 1.00 25.32 C </line>
<line>ATOM 1546 CA ASN B 52 14.695 32.998 -0.613 1.00 34.98 C </line>
<line>ATOM 1554 CA ASP B 53 17.887 33.035 1.463 1.00 25.34 C </line>
<line>ATOM 1562 CA ILE B 54 19.861 29.764 1.512 1.00 23.52 C </line>
<line>ATOM 1570 CA GLY B 55 20.069 29.680 5.298 1.00 26.03 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ILE ASP ASN ALA SER PHE LEU GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 8.39 10.83 10.47 14.03 13.91 11.43 8.38 5.65 3.81 </line>
<line>GLY CA 9.66 11.68 10.04 13.02 12.44 9.26 6.05 3.81 </line>
<line>LEU CA 7.33 8.53 6.32 9.23 9.04 6.03 3.80 </line>
<line>PHE CA 8.02 9.45 6.78 8.49 6.78 3.81 </line>
<line>SER CA 8.95 8.89 5.41 5.43 3.82 </line>
<line>ALA CA 8.93 8.26 5.60 3.79 </line>
<line>ASN CA 8.65 6.45 3.81 </line>
<line>ASP CA 5.54 3.82 </line>
<line>ILE CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLN CA 162</line>
<line>GLY CA 197</line>
<line>LEU CA 224</line>
<line>PHE CA 287</line>
<line>SER CA 269</line>
<line>ALA CA 300</line>
<line>ASN CA 216</line>
<line>ASP CA 224</line>
<line>ILE CA 216</line>
<line>GLY CA 249</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>GDLSNPGAVMGNPK</sequence>
<secondary-structure> HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3626 CA GLY D 46 -28.380 -2.497 48.171 1.00 21.29 C </line>
<line>ATOM 3630 CA ASP D 47 -29.141 -5.668 46.165 1.00 29.86 C </line>
<line>ATOM 3638 CA LEU D 48 -27.704 -5.763 42.624 1.00 16.24 C </line>
<line>ATOM 3646 CA SER D 49 -27.448 -9.565 42.377 1.00 24.16 C </line>
<line>ATOM 3652 CA ASN D 50 -29.616 -10.625 39.438 1.00 41.54 C </line>
<line>ATOM 3660 CA PRO D 51 -31.076 -8.686 36.440 1.00 34.87 C </line>
<line>ATOM 3667 CA GLY D 52 -34.703 -8.259 37.615 1.00 29.21 C </line>
<line>ATOM 3671 CA ALA D 53 -33.702 -7.001 41.054 1.00 25.43 C </line>
<line>ATOM 3676 CA VAL D 54 -31.347 -4.365 39.528 1.00 25.94 C </line>
<line>ATOM 3683 CA MET D 55 -33.964 -2.754 37.187 1.00 29.82 C </line>
<line>ATOM 3691 CA GLY D 56 -36.655 -2.681 39.881 1.00 24.63 C </line>
<line>ATOM 3695 CA ASN D 57 -34.073 -1.079 42.204 1.00 26.57 C </line>
<line>ATOM 3703 CA PRO D 58 -35.338 2.411 43.238 1.00 16.40 C </line>
<line>ATOM 3710 CA LYS D 59 -31.796 3.656 43.733 1.00 33.64 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PRO ASN GLY MET VAL ALA GLY PRO ASN SER LEU ASP GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 8.32 9.84 8.37 11.71 12.32 9.33 9.96 13.59 13.53 11.99 9.19 6.47 3.83 </line>
<line>ASP CA 10.00 10.59 7.81 10.24 10.60 7.11 6.98 10.52 10.36 8.37 5.69 3.82 </line>
<line>LEU CA 10.33 11.20 7.92 9.86 8.82 4.98 6.32 8.96 7.63 6.12 3.82 </line>
<line>SER CA 13.98 14.37 10.77 11.76 10.76 7.10 6.89 8.78 7.01 3.80 </line>
<line>ASN CA 15.07 14.73 10.89 10.62 9.27 6.50 5.70 5.90 3.86 </line>
<line>PRO CA 14.35 13.69 10.00 8.89 6.64 5.32 5.57 3.84 </line>
<line>GLY CA 13.71 12.08 8.54 6.33 5.57 5.49 3.80 </line>
<line>ALA CA 11.15 9.80 6.04 5.36 5.75 3.85 </line>
<line>VAL CA 9.07 8.70 5.04 5.58 3.86 </line>
<line>MET CA 9.41 8.07 5.29 3.81 </line>
<line>GLY CA 8.87 6.24 3.82 </line>
<line>ASN CA 5.47 3.85 </line>
<line>PRO CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLY CA 186</line>
<line>ASP CA 194</line>
<line>LEU CA 255</line>
<line>SER CA 192</line>
<line>ASN CA 165</line>
<line>PRO CA 213</line>
<line>GLY CA 173</line>
<line>ALA CA 191</line>
<line>VAL CA 286</line>
<line>MET CA 285</line>
<line>GLY CA 230</line>
<line>ASN CA 256</line>
<line>PRO CA 220</line>
<line>LYS CA 253</line>
</n14>
</entryChain>
<parallel>
<x>48.37200164794922</x>
<y>40.4379997253418</y>
<z>-37.39799880981445</z>
</parallel>
<rotation>
<x>-0.026000000536441803</x>
<y>-0.0860000029206276</y>
<z>0.9959999918937683</z>
<x>0.39800000190734863</x>
<y>-0.9150000214576721</y>
<z>-0.06800000369548798</z>
<x>0.9169999957084656</x>
<y>0.39500001072883606</y>
<z>0.057999998331069946</z>
</rotation>
<rmsd>2.778402090072632</rmsd>
<dmax>4.232143878936768</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CG8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CG8B</entryIDChain>
<sequence>GKHQE-IGVDT</sequence>
<secondary-structure>HHHHH- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1813 CA GLY B 86 14.492 19.570 24.845 1.00 30.49 C </line>
<line>ATOM 1817 CA LYS B 87 16.637 20.780 21.960 1.00 29.96 C </line>
<line>ATOM 1826 CA HIS B 88 14.683 24.056 21.821 1.00 23.71 C </line>
<line>ATOM 1836 CA GLN B 89 14.908 24.691 25.571 1.00 25.58 C </line>
<line>ATOM 1845 CA GLU B 90 18.682 24.157 25.453 1.00 32.78 C </line>
<line>ATOM 1854 CA ILE B 91 18.959 26.749 22.678 1.00 28.63 C </line>
<line>ATOM 1862 CA GLY B 92 16.893 29.152 24.801 1.00 24.28 C </line>
<line>ATOM 1866 CA VAL B 93 13.595 29.595 22.932 1.00 24.99 C </line>
<line>ATOM 1873 CA ASP B 94 10.495 30.755 24.853 1.00 22.94 C </line>
<line>ATOM 1881 CA THR B 95 7.595 28.266 24.681 1.00 27.18 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASP VAL GLY ILE GLU GLN HIS LYS GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.10 11.88 10.25 9.88 8.73 6.24 5.19 5.41 3.79 </line>
<line>LYS CA 12.05 12.07 9.38 8.84 6.44 5.27 5.60 3.82 </line>
<line>HIS CA 8.73 8.46 5.75 6.30 5.13 5.40 3.81 </line>
<line>GLN CA 8.19 7.53 5.72 4.94 5.39 3.81 </line>
<line>GLU CA 11.85 10.53 7.86 5.35 3.81 </line>
<line>ILE CA 11.64 9.61 6.08 3.81 </line>
<line>GLY CA 9.34 6.60 3.82 </line>
<line>VAL CA 6.39 3.83 </line>
<line>ASP CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 224</line>
<line>LYS CA 243</line>
<line>HIS CA 306</line>
<line>GLN CA 237</line>
<line>GLU CA 194</line>
<line>ILE CA 229</line>
<line>GLY CA 228</line>
<line>VAL CA 304</line>
<line>ASP CA 274</line>
<line>THR CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>ELHCDKLHVDP</sequence>
<secondary-structure>HIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 3941 CA GLU D 90 -13.826 16.480 39.035 1.00 31.15 C </line>
<line>ATOM 3950 CA LEU D 91 -16.415 14.394 41.001 1.00 28.27 C </line>
<line>ATOM 3958 CA HIS D 92 -15.506 11.253 39.055 1.00 30.55 C </line>
<line>ATOM 3968 CA CYS D 93 -11.713 11.672 38.759 1.00 32.79 C </line>
<line>ATOM 3974 CA ASP D 94 -11.134 13.089 42.224 1.00 42.90 C </line>
<line>ATOM 3982 CA LYS D 95 -13.719 11.854 44.720 1.00 46.60 C </line>
<line>ATOM 3991 CA LEU D 96 -14.855 8.692 42.852 1.00 29.40 C </line>
<line>ATOM 3999 CA HIS D 97 -11.816 7.768 40.732 1.00 32.47 C </line>
<line>ATOM 4009 CA VAL D 98 -13.849 6.203 37.895 1.00 29.91 C </line>
<line>ATOM 4016 CA ASP D 99 -11.870 5.090 34.865 1.00 27.35 C </line>
<line>ATOM 4024 CA PRO D 100 -12.478 7.199 31.727 1.00 28.94 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ASP VAL HIS LEU LYS ASP CYS HIS LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 11.89 12.29 10.34 9.10 8.73 7.33 5.38 5.26 5.49 3.86 </line>
<line>LEU CA 12.38 12.04 9.13 8.07 6.19 5.25 5.58 5.88 3.81 </line>
<line>HIS CA 8.91 8.29 5.44 5.35 4.63 5.97 5.70 3.83 </line>
<line>CYS CA 8.37 7.65 5.93 4.38 5.96 6.29 3.79 </line>
<line>ASP CA 12.11 10.89 8.57 5.57 5.79 3.80 </line>
<line>LYS CA 13.86 12.10 8.86 6.02 3.84 </line>
<line>LEU CA 11.47 9.26 5.64 3.82 </line>
<line>HIS CA 9.05 6.45 3.83 </line>
<line>VAL CA 6.40 3.79 </line>
<line>ASP CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLU CA 225</line>
<line>LEU CA 234</line>
<line>HIS CA 300</line>
<line>CYS CA 239</line>
<line>ASP CA 189</line>
<line>LYS CA 171</line>
<line>LEU CA 232</line>
<line>HIS CA 233</line>
<line>VAL CA 306</line>
<line>ASP CA 286</line>
<line>PRO CA 309</line>
</n14>
</entryChain>
<parallel>
<x>29.7450008392334</x>
<y>13.649999618530273</y>
<z>-16.437000274658203</z>
</parallel>
<rotation>
<x>0.09300000220537186</x>
<y>0.21799999475479126</y>
<z>0.972000002861023</z>
<x>0.0020000000949949026</x>
<y>-0.9760000109672546</y>
<z>0.21799999475479126</z>
<x>0.9959999918937683</x>
<y>-0.017999999225139618</y>
<z>-0.09200000017881393</z>
</rotation>
<rmsd>0.6677539944648743</rmsd>
<dmax>1.2094500064849854</dmax>
</indel>