NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CGUA-1UKTA
confEVID 1CGUA-1UKTA
pdbIDA 1CGU
pdbIDB 1UKT
pdbChainA A
pdbChainB A
identity 0.721599996089935
indelSize 3
alignment <alignment>
<seq1>DPDTAVTNKQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWLDMGVDGIRVAAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQVTFIDNHDMDRFKTSAVNNRRLEQALAFTLTSRGVPAIYYGTEQYLTGNGDPDNRAKMPSFSKSTTAFNVISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFGKSVAVVAVNRNLSTSASITGLSTSLPTGSYTDVLGGVLNGNNITSTN-GSINNFTLAAGATAVWQYTTAETTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVYFGTTAVTGAAITSWEDTQIKVTIPSVAAGNYAVKVAA-SGVNSNAYNNFTILTGDQVTVRFVVNNASTTLGQNLYLTGNVAELGNWSTGSTAIGPAFNQVIHQYPTWYYDVSVPAGKQLEFKFFKKNGSTITWESGSNHTFTTPASGTATVTVNWQ-</seq1>
<seq2>APDTSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQVTFIDNHDMERFHTSNGDRRKLEQALAFTLTSRGVPAIYYGSEQYMSGGNDPDNRARLPSFSTTTTAYQVIQKLAPLRKSNPAIAYGSTHERWINNDVIIYERKFGNNVAVVAINRNMNTPASITGLVTSLPRGSYNDVLGGILNGNTLTVGAGGAASNFTLAPGGTAVWQYTTDATTPIIGNVGPMMAKPGVTITIDGRGFGSGKGTVYFGTTAVTGADIVAWEDTQIQVKIPAVPGGIYDIRVANAAGAASNIYDNFEVLTGDQVTVRFVINNATTALGQNVFLTGNVSELGNWDPN-NAIGPMYNQVVYQYPTWYYDVSVPAGQTIEFKFLKKQGSTVTWEGGANRTFTTPTSGTATVNVNWQP</seq2>
<ss_1> EEEEE GGG HHHHHHHHH HHHH EEE EEE EEE HHHH HHHHHHHHHHHH EEEEEE EEE HHHH EE EEEEE HHHHHHHHHHHHHHH EEEE GGG HHHHHHHHHHH EEE HHHHHHHHH EEEEHHHHHHHHHH HHHHHHHHHHHHHH GGG EE HHHHHHHHHHHHH EE HHHHHHHHHGGG EEE EEE EEEEEEEE EEEEEEE EEE EEE EEEE - EEE EEEEEEE EEE EEEEEEEE EEEE EEE EEEEEEEEEEE EEEEEEEEE- EEE EEE EEEEEEEEEE EEEEEE EEEEEEE EEEEEEEEEE EEE EEE EEEEE -</ss_1>
<ss_2> EEEE GGG HHHHHHHH EEE EEEGG HHHHHHHHHHHH EEEEEE EEE HHHH EEEEE HHHHHHHHHHHHHHHH EEEE GGG HHHHHHHHHHH EEE HHHHHHH EEEEHHHHHHHHHH HHHHHHHHHHHHHH GGG EE HHHHHHHHHHHHH EEEEE HHHHHHHHHGGG EEE EEEEEEEE EEEEEEE EEE EEE EEE EEE EEE EEEEEEE EEE EEEEEEEE EEEE EEE GGG EEEEEEE EEEEEEEE EEE EEEEEEEEEE EEEEEE - EEEEEEE EEEEEEEEEEE EEE EEE EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CGU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CGUA</entryIDChain>
<sequence>ITSTN-GSINN</sequence>
<secondary-structure>EEEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 3660 CA ILE A 469 104.969 26.941 12.951 1.00 17.22 C </line>
<line>ATOM 3668 CA THR A 470 106.760 30.002 14.397 1.00 18.77 C </line>
<line>ATOM 3675 CA SER A 471 105.139 33.396 15.187 1.00 21.25 C </line>
<line>ATOM 3681 CA THR A 472 107.312 36.462 14.921 1.00 21.12 C </line>
<line>ATOM 3688 CA ASN A 473 105.033 38.885 16.238 1.00 25.77 C </line>
<line>ATOM 3696 CA GLY A 474 102.103 37.239 14.610 1.00 25.74 C </line>
<line>ATOM 3700 CA SER A 475 103.665 36.654 11.250 1.00 24.44 C </line>
<line>ATOM 3706 CA ILE A 476 104.050 33.103 10.540 1.00 24.05 C </line>
<line>ATOM 3714 CA ASN A 477 106.899 31.860 8.491 1.00 23.92 C </line>
<line>ATOM 3722 CA ASN A 478 106.273 30.261 5.142 1.00 20.98 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASN ILE SER GLY ASN THR SER THR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 8.59 6.91 6.68 9.95 10.82 12.39 10.00 6.83 3.83 </line>
<line>THR CA 9.27 6.19 5.64 7.98 8.61 9.23 6.50 3.84 </line>
<line>SER CA 10.58 7.09 4.78 5.32 4.93 5.59 3.77 </line>
<line>THR CA 11.63 7.92 6.41 5.18 5.28 3.58 </line>
<line>ASN CA 14.11 10.62 8.18 5.63 3.73 </line>
<line>GLY CA 12.48 9.45 6.12 3.75 </line>
<line>SER CA 9.22 6.41 3.64 </line>
<line>ILE CA 6.49 3.72 </line>
<line>ASN CA 3.76 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ILE CA 345</line>
<line>THR CA 279</line>
<line>SER CA 276</line>
<line>THR CA 192</line>
<line>ASN CA 183</line>
<line>GLY CA 282</line>
<line>SER CA 252</line>
<line>ILE CA 313</line>
<line>ASN CA 246</line>
<line>ASN CA 218</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UKT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UKTA</entryIDChain>
<sequence>LTVGAGGAASN</sequence>
<secondary-structure>EEE EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 3689 CA LEU A 469 45.544 12.276 -3.037 1.00 10.74 C </line>
<line>ATOM 3697 CA THR A 470 44.513 9.896 -5.779 1.00 18.26 C </line>
<line>ATOM 3704 CA VAL A 471 41.892 11.712 -7.816 1.00 18.73 C </line>
<line>ATOM 3711 CA GLY A 472 40.171 9.408 -10.240 1.00 26.74 C </line>
<line>ATOM 3715 CA ALA A 473 37.449 10.102 -12.758 1.00 36.21 C </line>
<line>ATOM 3720 CA GLY A 474 35.114 13.000 -12.145 1.00 35.72 C </line>
<line>ATOM 3724 CA GLY A 475 37.360 14.749 -9.647 1.00 32.25 C </line>
<line>ATOM 3728 CA ALA A 476 36.357 12.004 -7.203 1.00 22.80 C </line>
<line>ATOM 3733 CA ALA A 477 39.076 10.725 -4.880 1.00 21.59 C </line>
<line>ATOM 3738 CA SER A 478 39.606 7.263 -3.365 1.00 18.48 C </line>
<line>ATOM 3744 CA ASN A 479 38.711 7.050 0.319 1.00 15.25 C </line>
</atom-coordinate>
<distance-map>
<line> ASN SER ALA ALA GLY GLY ALA GLY VAL THR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 9.23 7.78 6.90 10.09 10.81 13.87 12.84 9.43 6.04 3.77 </line>
<line>THR CA 8.89 6.07 5.57 8.54 9.47 11.77 9.93 6.24 3.78 </line>
<line>VAL CA 9.90 6.70 4.19 5.58 5.75 8.14 6.84 3.76 </line>
<line>GLY CA 10.92 7.22 5.63 5.52 6.06 6.49 3.77 </line>
<line>ALA CA 13.49 10.05 8.07 5.97 5.59 3.77 </line>
<line>GLY CA 14.27 11.41 8.58 5.19 3.79 </line>
<line>GLY CA 12.67 10.03 6.47 3.81 </line>
<line>ALA CA 9.31 6.91 3.80 </line>
<line>ALA CA 6.38 3.82 </line>
<line>SER CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 358</line>
<line>THR CA 265</line>
<line>VAL CA 276</line>
<line>GLY CA 194</line>
<line>ALA CA 147</line>
<line>GLY CA 159</line>
<line>GLY CA 275</line>
<line>ALA CA 250</line>
<line>ALA CA 297</line>
<line>SER CA 235</line>
<line>ASN CA 217</line>
</n14>
</entryChain>
<parallel>
<x>64.58399963378906</x>
<y>22.72599983215332</y>
<z>21.43199920654297</z>
</parallel>
<rotation>
<x>0.2630000114440918</x>
<y>-0.7910000085830688</y>
<z>0.5519999861717224</z>
<x>-0.9570000171661377</x>
<y>-0.14000000059604645</y>
<z>0.25600001215934753</z>
<x>-0.125</x>
<y>-0.5950000286102295</y>
<z>-0.7940000295639038</z>
</rotation>
<rmsd>0.7605149745941162</rmsd>
<dmax>1.1878600120544434</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CGU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CGUA</entryIDChain>
<sequence>VKVAA-SGVNS</sequence>
<secondary-structure>EEEEE- </secondary-structure>
<atom-coordinate>
<line>ATOM 4323 CA VAL A 562 75.096 43.120 30.910 1.00 14.58 C </line>
<line>ATOM 4330 CA LYS A 563 78.531 44.414 32.137 1.00 16.83 C </line>
<line>ATOM 4339 CA VAL A 564 80.698 43.356 35.077 1.00 19.97 C </line>
<line>ATOM 4346 CA ALA A 565 83.003 45.846 36.906 1.00 25.49 C </line>
<line>ATOM 4351 CA ALA A 566 85.997 44.401 38.672 1.00 32.14 C </line>
<line>ATOM 4356 CA SER A 567 88.575 46.563 40.424 1.00 34.46 C </line>
<line>ATOM 4362 CA GLY A 568 86.932 49.658 38.947 1.00 35.22 C </line>
<line>ATOM 4366 CA VAL A 569 87.507 48.481 35.352 1.00 34.18 C </line>
<line>ATOM 4373 CA ASN A 570 84.477 47.416 33.367 1.00 29.77 C </line>
<line>ATOM 4381 CA SER A 571 84.067 44.293 31.233 1.00 22.56 C </line>
</atom-coordinate>
<distance-map>
<line> SER ASN VAL GLY SER ALA ALA VAL LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 9.05 10.61 14.23 15.73 16.85 13.44 10.29 6.99 3.87 </line>
<line>LYS CA 5.61 6.77 10.37 12.02 13.20 9.92 6.69 3.80 </line>
<line>VAL CA 5.20 5.80 8.53 9.67 10.05 6.49 3.85 </line>
<line>ALA CA 5.98 4.14 5.44 5.84 6.63 3.76 </line>
<line>ALA CA 7.69 6.29 5.47 5.35 3.79 </line>
<line>SER CA 10.49 8.21 5.53 3.80 </line>
<line>GLY CA 9.82 6.50 3.83 </line>
<line>VAL CA 6.81 3.78 </line>
<line>ASN CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>VAL CA 416</line>
<line>LYS CA 394</line>
<line>VAL CA 422</line>
<line>ALA CA 330</line>
<line>ALA CA 294</line>
<line>SER CA 196</line>
<line>GLY CA 171</line>
<line>VAL CA 198</line>
<line>ASN CA 261</line>
<line>SER CA 333</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UKT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UKTA</entryIDChain>
<sequence>IRVANAAGAAS</sequence>
<secondary-structure>EEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 4350 CA ILE A 563 34.522 46.580 -14.007 1.00 23.33 C </line>
<line>ATOM 4358 CA ARG A 564 34.862 44.085 -16.842 1.00 21.36 C </line>
<line>ATOM 4369 CA VAL A 565 37.587 43.039 -19.298 1.00 14.62 C </line>
<line>ATOM 4376 CA ALA A 566 37.551 41.699 -22.848 1.00 13.35 C </line>
<line>ATOM 4381 CA ASN A 567 40.608 40.321 -24.588 1.00 26.83 C </line>
<line>ATOM 4389 CA ALA A 568 41.403 41.078 -28.233 1.00 35.02 C </line>
<line>ATOM 4394 CA ALA A 569 39.161 38.138 -29.231 1.00 36.94 C </line>
<line>ATOM 4399 CA GLY A 570 36.017 39.444 -27.567 1.00 31.51 C </line>
<line>ATOM 4403 CA ALA A 571 36.185 36.988 -24.694 1.00 33.23 C </line>
<line>ATOM 4408 CA ALA A 572 34.734 38.958 -21.743 1.00 26.40 C </line>
<line>ATOM 4413 CA SER A 573 35.641 38.450 -18.072 1.00 21.00 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA ALA GLY ALA ALA ASN ALA VAL ARG ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.16 10.86 14.46 15.40 18.02 16.73 13.72 10.54 7.07 3.79 </line>
<line>ARG CA 5.82 7.09 10.67 11.74 14.40 13.48 10.35 7.00 3.81 </line>
<line>VAL CA 5.13 5.55 8.23 9.15 11.19 9.91 6.67 3.79 </line>
<line>ALA CA 6.08 4.08 5.24 5.45 7.48 6.65 3.78 </line>
<line>ASN CA 8.40 6.67 5.54 5.54 5.33 3.81 </line>
<line>ALA CA 11.97 9.54 7.52 5.67 3.83 </line>
<line>ALA CA 11.71 8.74 5.55 3.79 </line>
<line>GLY CA 9.55 5.98 3.78 </line>
<line>ALA CA 6.80 3.83 </line>
<line>ALA CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ILE CA 414</line>
<line>ARG CA 399</line>
<line>VAL CA 428</line>
<line>ALA CA 339</line>
<line>ASN CA 302</line>
<line>ALA CA 218</line>
<line>ALA CA 169</line>
<line>GLY CA 190</line>
<line>ALA CA 214</line>
<line>ALA CA 270</line>
<line>SER CA 332</line>
</n14>
</entryChain>
<parallel>
<x>46.23099899291992</x>
<y>4.442999839782715</y>
<z>58.4379997253418</z>
</parallel>
<rotation>
<x>0.31200000643730164</x>
<y>-0.8610000014305115</y>
<z>0.40299999713897705</z>
<x>-0.8790000081062317</x>
<y>-0.10100000351667404</y>
<z>0.4659999907016754</z>
<x>-0.36000001430511475</x>
<y>-0.49900001287460327</y>
<z>-0.7879999876022339</z>
</rotation>
<rmsd>0.6334540247917175</rmsd>
<dmax>1.3157299757003784</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1UKT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1UKTA</entryIDChain>
<sequence>NWDPN-NAIGP</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 4732 CA ASN A 615 22.723 61.944 -5.694 1.00 17.75 C </line>
<line>ATOM 4740 CA TRP A 616 19.353 62.944 -4.150 1.00 18.18 C </line>
<line>ATOM 4754 CA ASP A 617 18.402 59.342 -3.271 1.00 19.60 C </line>
<line>ATOM 4762 CA PRO A 618 17.237 59.284 0.390 1.00 20.85 C </line>
<line>ATOM 4769 CA ASN A 619 18.492 55.674 0.671 1.00 26.44 C </line>
<line>ATOM 4777 CA ASN A 620 22.031 56.945 0.106 1.00 27.89 C </line>
<line>ATOM 4785 CA ALA A 621 21.809 60.024 2.336 1.00 20.17 C </line>
<line>ATOM 4790 CA ILE A 622 24.803 60.799 4.585 1.00 21.23 C </line>
<line>ATOM 4798 CA GLY A 623 23.973 60.034 8.191 1.00 13.67 C </line>
<line>ATOM 4802 CA PRO A 624 22.688 59.584 10.831 1.00 19.00 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLY ILE ALA ASN ASN PRO ASP TRP ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.69 14.07 10.55 8.31 7.69 9.89 8.61 5.60 3.84 </line>
<line>TRP CA 15.71 13.49 10.52 7.53 7.83 8.77 6.20 3.83 </line>
<line>ASP CA 14.74 12.76 10.24 6.60 5.51 5.39 3.84 </line>
<line>PRO CA 11.78 10.33 8.78 5.02 5.34 3.83 </line>
<line>ASN CA 11.67 10.28 9.02 5.72 3.80 </line>
<line>ASN CA 11.06 8.87 6.53 3.81 </line>
<line>ALA CA 8.55 6.24 3.82 </line>
<line>ILE CA 6.71 3.78 </line>
<line>GLY CA 2.97 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASN CA 298</line>
<line>TRP CA 290</line>
<line>ASP CA 240</line>
<line>PRO CA 289</line>
<line>ASN CA 240</line>
<line>ASN CA 301</line>
<line>ALA CA 385</line>
<line>ILE CA 456</line>
<line>GLY CA 446</line>
<line>PRO CA 419</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CGU</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CGUA</entryIDChain>
<sequence>NWSTGSTAIGP</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 4697 CA ASN A 613 55.617 48.168 24.121 1.00 16.81 C </line>
<line>ATOM 4705 CA TRP A 614 53.570 49.992 21.512 1.00 16.21 C </line>
<line>ATOM 4719 CA SER A 615 56.045 49.131 18.816 1.00 17.31 C </line>
<line>ATOM 4725 CA THR A 616 55.405 48.525 15.052 1.00 16.28 C </line>
<line>ATOM 4732 CA GLY A 617 58.980 47.235 14.754 1.00 18.70 C </line>
<line>ATOM 4736 CA SER A 618 60.479 43.764 15.370 1.00 22.51 C </line>
<line>ATOM 4742 CA THR A 619 58.966 43.673 18.832 1.00 19.71 C </line>
<line>ATOM 4749 CA ALA A 620 55.311 44.041 17.652 1.00 14.07 C </line>
<line>ATOM 4754 CA ILE A 621 53.964 40.545 17.613 1.00 9.05 C </line>
<line>ATOM 4762 CA GLY A 622 52.805 39.457 14.276 1.00 4.85 C </line>
<line>ATOM 4766 CA PRO A 623 52.098 38.505 11.698 1.00 2.64 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLY ILE ALA THR SER GLY THR SER TRP ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.13 13.44 10.16 7.68 7.71 10.94 10.00 9.08 5.41 3.78 </line>
<line>TRP CA 15.18 12.80 10.23 7.30 8.73 11.15 9.09 6.87 3.76 </line>
<line>SER CA 13.38 11.17 8.92 5.27 6.19 7.77 5.36 3.87 </line>
<line>THR CA 11.07 9.47 8.50 5.18 7.11 6.97 3.81 </line>
<line>GLY CA 11.53 9.94 8.84 5.66 5.41 3.83 </line>
<line>SER CA 10.55 8.87 7.61 5.66 3.78 </line>
<line>THR CA 11.17 8.75 6.02 3.86 </line>
<line>ALA CA 8.74 6.22 3.75 </line>
<line>ILE CA 6.53 3.70 </line>
<line>GLY CA 2.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ASN CA 312</line>
<line>TRP CA 301</line>
<line>SER CA 269</line>
<line>THR CA 293</line>
<line>GLY CA 243</line>
<line>SER CA 286</line>
<line>THR CA 345</line>
<line>ALA CA 375</line>
<line>ILE CA 463</line>
<line>GLY CA 456</line>
<line>PRO CA 444</line>
</n14>
</entryChain>
<parallel>
<x>-35.375999450683594</x>
<y>13.206000328063965</y>
<z>-19.172000885009766</z>
</parallel>
<rotation>
<x>0.14100000262260437</x>
<y>-0.949999988079071</y>
<z>-0.27799999713897705</z>
<x>-0.765999972820282</x>
<y>0.0729999989271164</y>
<z>-0.6380000114440918</z>
<x>0.6269999742507935</x>
<y>0.30300000309944153</y>
<z>-0.7179999947547913</z>
</rotation>
<rmsd>0.7088500261306763</rmsd>
<dmax>1.3053419589996338</dmax>
</indel>