NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CJ8A-2G4NF
confEVID 1CJ8A-2G4NF
pdbIDA 1CJ8
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.335900008678436
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNARATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CJ8A</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 341 CA THR A 43 3.080 8.928 26.847 1.00 16.95 C </line>
<line>ATOM 348 CA ASN A 44 4.457 5.426 26.509 1.00 17.54 C </line>
<line>ATOM 356 CA TYR A 45 3.460 2.409 28.575 1.00 15.92 C </line>
<line>ATOM 368 CA ASN A 46 6.123 -0.164 29.421 1.00 17.50 C </line>
<line>ATOM 376 CA ALA A 47 4.215 -3.427 29.634 1.00 19.68 C </line>
<line>ATOM 381 CA GLY A 48 7.276 -5.279 30.949 1.00 16.54 C </line>
<line>ATOM 385 CA ASP A 49 7.500 -3.378 34.227 1.00 14.28 C </line>
<line>ATOM 393 CA ARG A 50 4.135 -1.590 34.418 1.00 14.82 C </line>
<line>ATOM 404 CA SER A 51 5.608 1.919 34.400 1.00 11.30 C </line>
<line>ATOM 410 CA THR A 52 4.761 4.772 32.011 1.00 8.32 C </line>
<line>ATOM 417 CA ASP A 53 6.988 7.447 30.416 1.00 9.19 C </line>
<line>ATOM 425 CA TYR A 54 5.551 10.979 30.345 1.00 9.33 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.75 5.50 6.84 10.61 13.00 15.01 15.37 12.72 9.93 6.75 3.78 </line>
<line>ASN CA 6.84 5.07 5.55 8.71 10.58 12.10 11.93 9.39 6.52 3.79 </line>
<line>TYR CA 9.00 6.42 4.37 6.23 7.11 9.04 8.91 5.98 3.80 </line>
<line>ASN CA 11.20 7.72 5.74 5.42 5.56 5.94 5.46 3.79 </line>
<line>ALA CA 14.49 11.25 8.55 7.30 5.13 5.65 3.81 </line>
<line>GLY CA 16.36 12.74 10.42 8.15 5.96 3.80 </line>
<line>ASP CA 15.00 11.49 8.88 5.63 3.82 </line>
<line>ARG CA 13.29 10.29 6.83 3.81 </line>
<line>SER CA 9.93 6.95 3.82 </line>
<line>THR CA 6.48 3.83 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 289</line>
<line>ASN CA 265</line>
<line>TYR CA 227</line>
<line>ASN CA 202</line>
<line>ALA CA 141</line>
<line>GLY CA 124</line>
<line>ASP CA 163</line>
<line>ARG CA 196</line>
<line>SER CA 262</line>
<line>THR CA 319</line>
<line>ASP CA 408</line>
<line>TYR CA 431</line>
</n14>
</entryChain>
<parallel>
<x>54.39899826049805</x>
<y>13.211000442504883</y>
<z>87.7760009765625</z>
</parallel>
<rotation>
<x>-0.3449999988079071</x>
<y>0.38999998569488525</y>
<z>0.8539999723434448</z>
<x>-0.824999988079071</x>
<y>0.3089999854564667</y>
<z>-0.4740000069141388</z>
<x>-0.4480000138282776</x>
<y>-0.8679999709129333</y>
<z>0.2150000035762787</z>
</rotation>
<rmsd>0.7294750213623047</rmsd>
<dmax>1.3636130094528198</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CJ8A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 752 CA ARG A 98 16.266 16.670 39.208 1.00 11.83 C </line>
<line>ATOM 763 CA VAL A 99 16.833 13.495 37.133 1.00 11.02 C </line>
<line>ATOM 770 CA VAL A 100 20.296 14.582 35.949 1.00 12.06 C </line>
<line>ATOM 777 CA ARG A 101 21.239 15.629 39.434 1.00 20.52 C </line>
<line>ATOM 788 CA ASP A 102 21.724 11.867 39.977 1.00 24.98 C </line>
<line>ATOM 796 CA PRO A 103 25.178 10.218 39.352 1.00 28.90 C </line>
<line>ATOM 803 CA GLN A 104 24.454 9.034 35.769 1.00 22.54 C </line>
<line>ATOM 812 CA GLY A 105 23.671 12.533 34.554 1.00 15.09 C </line>
<line>ATOM 816 CA ILE A 106 22.215 12.737 31.028 1.00 15.97 C </line>
<line>ATOM 824 CA ARG A 107 23.085 9.026 30.620 1.00 16.09 C </line>
<line>ATOM 835 CA ALA A 108 19.998 8.174 32.702 1.00 15.77 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.33 13.37 10.85 9.68 11.71 11.00 7.31 5.09 5.59 3.84 </line>
<line>VAL CA 7.61 10.07 8.17 7.37 8.94 9.24 5.89 5.41 3.82 </line>
<line>VAL CA 7.19 8.19 5.59 4.19 6.94 7.38 5.06 3.76 </line>
<line>ARG CA 10.12 11.17 8.94 6.27 8.20 6.69 3.83 </line>
<line>ASP CA 8.34 9.87 9.00 5.80 5.76 3.88 </line>
<line>PRO CA 8.67 9.06 9.19 5.54 3.84 </line>
<line>GLN CA 5.48 5.33 6.42 3.79 </line>
<line>GLY CA 5.99 5.30 3.82 </line>
<line>ILE CA 5.34 3.83 </line>
<line>ARG CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 332</line>
<line>VAL CA 385</line>
<line>VAL CA 340</line>
<line>ARG CA 245</line>
<line>ASP CA 228</line>
<line>PRO CA 174</line>
<line>GLN CA 222</line>
<line>GLY CA 297</line>
<line>ILE CA 385</line>
<line>ARG CA 313</line>
<line>ALA CA 338</line>
</n14>
</entryChain>
<parallel>
<x>19.594999313354492</x>
<y>3.318000078201294</y>
<z>90.39399719238281</z>
</parallel>
<rotation>
<x>-0.25099998712539673</x>
<y>0.2290000021457672</y>
<z>0.9399999976158142</z>
<x>-0.8870000243186951</x>
<y>0.33399999141693115</y>
<z>-0.3190000057220459</z>
<x>-0.3869999945163727</x>
<y>-0.9139999747276306</y>
<z>0.11999999731779099</z>
</rotation>
<rmsd>1.0929770469665527</rmsd>
<dmax>2.3839519023895264</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CJ8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CJ8A</entryIDChain>
<sequence>RCQNRDVRQYV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 899 CA ARG A 115 21.509 8.697 19.407 1.00 13.41 C </line>
<line>ATOM 910 CA CYS A 116 23.193 11.708 21.011 1.00 11.55 C </line>
<line>ATOM 916 CA GLN A 117 26.334 10.637 22.868 1.00 17.17 C </line>
<line>ATOM 925 CA ASN A 118 29.500 11.150 20.816 1.00 20.44 C </line>
<line>ATOM 933 CA ARG A 119 27.576 12.610 17.890 1.00 16.00 C </line>
<line>ATOM 944 CA ASP A 120 27.465 16.008 16.256 1.00 20.00 C </line>
<line>ATOM 952 CA VAL A 121 24.446 17.517 18.034 1.00 15.00 C </line>
<line>ATOM 959 CA ARG A 122 24.885 21.104 16.799 1.00 18.22 C </line>
<line>ATOM 970 CA GLN A 123 22.175 20.540 14.152 1.00 16.96 C </line>
<line>ATOM 979 CA TYR A 124 19.553 20.631 16.908 1.00 14.97 C </line>
<line>ATOM 991 CA VAL A 125 20.139 24.306 17.732 1.00 13.66 C </line>
</atom-coordinate>
<distance-map>
<line> VAL TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 15.76 12.35 12.97 13.12 9.40 9.94 7.38 8.48 6.25 3.80 </line>
<line>CYS CA 13.37 10.47 11.23 10.43 6.65 7.70 5.46 6.33 3.80 </line>
<line>GLN CA 15.86 13.47 13.83 12.19 8.62 8.59 5.50 3.81 </line>
<line>ASN CA 16.44 14.29 13.65 11.68 8.59 6.97 3.79 </line>
<line>ARG CA 13.86 11.39 10.30 8.98 5.82 3.77 </line>
<line>ASP CA 11.17 9.19 7.28 5.74 3.81 </line>
<line>VAL CA 8.05 5.91 5.42 3.82 </line>
<line>ARG CA 5.80 5.35 3.83 </line>
<line>GLN CA 5.58 3.81 </line>
<line>TYR CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 255</line>
<line>CYS CA 311</line>
<line>GLN CA 277</line>
<line>ASN CA 193</line>
<line>ARG CA 213</line>
<line>ASP CA 198</line>
<line>VAL CA 283</line>
<line>ARG CA 240</line>
<line>GLN CA 235</line>
<line>TYR CA 338</line>
<line>VAL CA 295</line>
</n14>
</entryChain>
<parallel>
<x>19.079999923706055</x>
<y>22.643999099731445</y>
<z>107.98400115966797</z>
</parallel>
<rotation>
<x>-0.38499999046325684</x>
<y>0.4129999876022339</y>
<z>0.824999988079071</z>
<x>-0.7559999823570251</x>
<y>0.3720000088214874</y>
<z>-0.5389999747276306</z>
<x>-0.5299999713897705</x>
<y>-0.8309999704360962</y>
<z>0.16899999976158142</z>
</rotation>
<rmsd>1.4339090585708618</rmsd>
<dmax>2.193305015563965</dmax>
</indel>