NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CKFA-2G4NF
confEVID 1CKFA-2G4NF
pdbIDA 1CKF
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.335900008678436
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSADYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKFA</entryIDChain>
<sequence>TNYNAGDRSADY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.215 8.762 25.659 1.00 19.00 C </line>
<line>ATOM 350 CA ASN A 44 4.484 5.207 25.612 1.00 17.04 C </line>
<line>ATOM 358 CA TYR A 45 3.332 2.234 27.649 1.00 15.35 C </line>
<line>ATOM 370 CA ASN A 46 5.929 -0.392 28.539 1.00 15.43 C </line>
<line>ATOM 378 CA ALA A 47 3.885 -3.600 28.805 1.00 14.41 C </line>
<line>ATOM 383 CA GLY A 48 7.044 -5.345 30.030 1.00 10.50 C </line>
<line>ATOM 387 CA ASP A 49 7.380 -3.613 33.395 1.00 9.83 C </line>
<line>ATOM 395 CA ARG A 50 4.045 -1.796 33.631 1.00 13.25 C </line>
<line>ATOM 406 CA SER A 51 5.565 1.700 33.561 1.00 9.19 C </line>
<line>ATOM 412 CA ALA A 52 4.898 4.522 31.119 1.00 7.18 C </line>
<line>ATOM 417 CA ASP A 53 6.914 7.307 29.461 1.00 6.63 C </line>
<line>ATOM 425 CA TYR A 54 5.499 10.845 29.503 1.00 6.82 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP ALA SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.93 5.50 7.11 10.86 13.26 15.18 15.26 12.77 9.97 6.83 3.77 </line>
<line>ASN CA 6.93 5.01 5.56 8.76 10.66 12.11 11.72 9.39 6.48 3.78 </line>
<line>TYR CA 9.07 6.47 4.44 6.34 7.25 9.14 8.77 5.97 3.80 </line>
<line>ASN CA 11.29 7.82 5.65 5.45 5.61 6.01 5.29 3.81 </line>
<line>ALA CA 14.55 11.34 8.51 7.32 5.15 5.77 3.81 </line>
<line>GLY CA 16.27 12.67 10.16 8.02 5.88 3.80 </line>
<line>ASP CA 15.09 11.62 8.80 5.62 3.81 </line>
<line>ARG CA 13.38 10.42 6.85 3.81 </line>
<line>SER CA 10.01 7.08 3.79 </line>
<line>ALA CA 6.55 3.82 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 288</line>
<line>ASN CA 255</line>
<line>TYR CA 220</line>
<line>ASN CA 193</line>
<line>ALA CA 136</line>
<line>GLY CA 127</line>
<line>ASP CA 166</line>
<line>ARG CA 196</line>
<line>SER CA 259</line>
<line>ALA CA 315</line>
<line>ASP CA 403</line>
<line>TYR CA 430</line>
</n14>
</entryChain>
<parallel>
<x>54.459999084472656</x>
<y>13.416000366210938</y>
<z>88.68099975585938</z>
</parallel>
<rotation>
<x>-0.38499999046325684</x>
<y>0.3889999985694885</y>
<z>0.8370000123977661</z>
<x>-0.8169999718666077</x>
<y>0.27799999713897705</y>
<z>-0.5049999952316284</z>
<x>-0.42899999022483826</x>
<y>-0.878000020980835</y>
<z>0.210999995470047</z>
</rotation>
<rmsd>0.7245799899101257</rmsd>
<dmax>1.3730000257492065</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKFA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 752 CA ARG A 98 16.163 16.447 38.614 1.00 6.41 C </line>
<line>ATOM 763 CA VAL A 99 16.932 13.404 36.412 1.00 5.69 C </line>
<line>ATOM 770 CA VAL A 100 20.369 14.690 35.421 1.00 7.71 C </line>
<line>ATOM 777 CA ARG A 101 21.201 15.612 39.022 1.00 13.05 C </line>
<line>ATOM 788 CA ASP A 102 21.770 11.842 39.475 1.00 12.62 C </line>
<line>ATOM 796 CA PRO A 103 25.152 10.121 38.713 1.00 14.10 C </line>
<line>ATOM 803 CA GLN A 104 24.366 9.239 35.063 1.00 9.65 C </line>
<line>ATOM 812 CA GLY A 105 23.677 12.788 33.971 1.00 7.10 C </line>
<line>ATOM 816 CA ILE A 106 22.295 13.049 30.414 1.00 9.75 C </line>
<line>ATOM 824 CA ARG A 107 23.122 9.351 29.948 1.00 10.39 C </line>
<line>ATOM 835 CA ALA A 108 19.940 8.593 31.941 1.00 11.49 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.98 13.19 10.79 9.56 11.48 10.99 7.31 5.12 5.57 3.83 </line>
<line>VAL CA 7.22 9.82 8.05 7.20 8.63 9.15 5.94 5.47 3.80 </line>
<line>VAL CA 7.03 8.13 5.61 4.08 6.77 7.39 5.15 3.81 </line>
<line>ARG CA 10.05 11.19 9.05 6.29 8.14 6.77 3.84 </line>
<line>ASP CA 8.41 9.94 9.16 5.90 5.74 3.87 </line>
<line>PRO CA 8.68 9.03 9.25 5.64 3.84 </line>
<line>GLN CA 5.45 5.27 6.36 3.78 </line>
<line>GLY CA 5.97 5.32 3.82 </line>
<line>ILE CA 5.27 3.82 </line>
<line>ARG CA 3.83 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>VAL CA 386</line>
<line>VAL CA 342</line>
<line>ARG CA 244</line>
<line>ASP CA 227</line>
<line>PRO CA 173</line>
<line>GLN CA 225</line>
<line>GLY CA 293</line>
<line>ILE CA 386</line>
<line>ARG CA 317</line>
<line>ALA CA 353</line>
</n14>
</entryChain>
<parallel>
<x>19.584999084472656</x>
<y>3.252000093460083</y>
<z>90.97699737548828</z>
</parallel>
<rotation>
<x>-0.22699999809265137</x>
<y>0.23800000548362732</y>
<z>0.9440000057220459</z>
<x>-0.8740000128746033</x>
<y>0.37700000405311584</y>
<z>-0.3059999942779541</z>
<x>-0.42899999022483826</x>
<y>-0.8949999809265137</y>
<z>0.12300000339746475</z>
</rotation>
<rmsd>1.0171560049057007</rmsd>
<dmax>2.227152109146118</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKFA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 891 CA ASN A 114 22.011 5.882 20.848 1.00 9.60 C </line>
<line>ATOM 899 CA ARG A 115 21.475 9.026 18.747 1.00 10.15 C </line>
<line>ATOM 910 CA CYS A 116 23.250 11.986 20.420 1.00 8.43 C </line>
<line>ATOM 916 CA GLN A 117 26.354 10.806 22.276 1.00 10.18 C </line>
<line>ATOM 925 CA ASN A 118 29.584 11.297 20.304 1.00 14.68 C </line>
<line>ATOM 933 CA ARG A 119 27.599 12.758 17.434 1.00 13.76 C </line>
<line>ATOM 944 CA ASP A 120 27.516 16.147 15.693 1.00 16.58 C </line>
<line>ATOM 952 CA VAL A 121 24.498 17.742 17.416 1.00 15.16 C </line>
<line>ATOM 959 CA ARG A 122 25.343 21.291 16.296 1.00 21.10 C </line>
<line>ATOM 970 CA GLN A 123 22.686 21.042 13.627 1.00 16.61 C </line>
<line>ATOM 979 CA TYR A 124 19.912 21.054 16.267 1.00 15.11 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.99 16.81 16.41 12.59 12.74 9.50 9.33 6.72 6.24 3.82 </line>
<line>ARG CA 12.38 13.12 13.09 9.32 9.82 7.29 8.56 6.28 3.84 </line>
<line>CYS CA 10.52 11.33 10.39 6.61 7.61 5.33 6.37 3.80 </line>
<line>GLN CA 13.51 13.89 12.11 8.67 8.56 5.37 3.82 </line>
<line>ASN CA 14.32 13.68 11.57 8.70 7.00 3.78 </line>
<line>ARG CA 11.37 10.36 8.90 5.87 3.81 </line>
<line>ASP CA 9.07 7.18 5.62 3.82 </line>
<line>VAL CA 5.77 5.34 3.82 </line>
<line>ARG CA 5.44 3.77 </line>
<line>GLN CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 218</line>
<line>ARG CA 260</line>
<line>CYS CA 310</line>
<line>GLN CA 278</line>
<line>ASN CA 193</line>
<line>ARG CA 218</line>
<line>ASP CA 201</line>
<line>VAL CA 286</line>
<line>ARG CA 232</line>
<line>GLN CA 230</line>
<line>TYR CA 331</line>
</n14>
</entryChain>
<parallel>
<x>19.90399932861328</x>
<y>22.517000198364258</y>
<z>108.9520034790039</z>
</parallel>
<rotation>
<x>-0.4099999964237213</x>
<y>0.4059999883174896</y>
<z>0.8169999718666077</z>
<x>-0.7419999837875366</x>
<y>0.3720000088214874</y>
<z>-0.5569999814033508</z>
<x>-0.5299999713897705</x>
<y>-0.8349999785423279</y>
<z>0.14900000393390656</z>
</rotation>
<rmsd>1.2187930345535278</rmsd>
<dmax>2.514246940612793</dmax>
</indel>