NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CKHA-2G4NF
confEVID 1CKHA-2G4NF
pdbIDA 1CKH
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKVPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKHA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.361 8.283 25.072 1.00 8.58 C </line>
<line>ATOM 350 CA ASN A 44 4.787 4.789 24.754 1.00 12.83 C </line>
<line>ATOM 358 CA TYR A 45 3.461 1.901 26.822 1.00 8.46 C </line>
<line>ATOM 370 CA ASN A 46 5.872 -0.839 27.905 1.00 10.66 C </line>
<line>ATOM 378 CA ALA A 47 3.932 -4.086 28.251 1.00 8.93 C </line>
<line>ATOM 383 CA GLY A 48 7.065 -5.727 29.655 1.00 13.47 C </line>
<line>ATOM 387 CA ASP A 49 6.795 -3.937 32.992 1.00 13.01 C </line>
<line>ATOM 395 CA ARG A 50 3.500 -2.023 32.669 1.00 14.48 C </line>
<line>ATOM 406 CA SER A 51 5.207 1.393 32.720 1.00 8.13 C </line>
<line>ATOM 412 CA THR A 52 4.678 4.259 30.236 1.00 5.28 C </line>
<line>ATOM 419 CA ASP A 53 7.030 6.881 28.719 1.00 7.91 C </line>
<line>ATOM 427 CA TYR A 54 5.478 10.379 28.883 1.00 7.82 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.84 5.36 6.68 10.46 12.80 14.96 15.20 12.78 9.88 6.62 3.79 </line>
<line>ASN CA 6.98 5.01 5.51 8.67 10.52 12.17 11.82 9.58 6.54 3.79 </line>
<line>TYR CA 8.96 6.41 4.32 6.17 7.04 9.13 8.90 6.17 3.81 </line>
<line>ASN CA 11.27 7.85 5.73 5.35 5.45 6.03 5.33 3.80 </line>
<line>ALA CA 14.56 11.41 8.61 7.18 4.90 5.54 3.81 </line>
<line>GLY CA 16.20 12.64 10.28 7.97 5.96 3.80 </line>
<line>ASP CA 14.95 11.63 8.90 5.57 3.82 </line>
<line>ARG CA 13.12 10.36 6.84 3.82 </line>
<line>SER CA 9.77 7.03 3.83 </line>
<line>THR CA 6.32 3.84 </line>
<line>ASP CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 293</line>
<line>ASN CA 262</line>
<line>TYR CA 225</line>
<line>ASN CA 202</line>
<line>ALA CA 144</line>
<line>GLY CA 137</line>
<line>ASP CA 175</line>
<line>ARG CA 200</line>
<line>SER CA 264</line>
<line>THR CA 324</line>
<line>ASP CA 411</line>
<line>TYR CA 435</line>
</n14>
</entryChain>
<parallel>
<x>54.52899932861328</x>
<y>13.78600025177002</y>
<z>89.4489974975586</z>
</parallel>
<rotation>
<x>-0.3529999852180481</x>
<y>0.45399999618530273</y>
<z>0.8180000185966492</z>
<x>-0.8190000057220459</x>
<y>0.2720000147819519</y>
<z>-0.5049999952316284</z>
<x>-0.4519999921321869</x>
<y>-0.8479999899864197</y>
<z>0.2759999930858612</z>
</rotation>
<rmsd>0.7082120180130005</rmsd>
<dmax>1.2645390033721924</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKHA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 754 CA ARG A 98 15.981 15.960 38.163 1.00 5.23 C </line>
<line>ATOM 765 CA VAL A 99 16.871 12.915 36.008 1.00 5.97 C </line>
<line>ATOM 772 CA VAL A 100 20.269 14.375 35.098 1.00 8.34 C </line>
<line>ATOM 779 CA ARG A 101 21.015 15.285 38.728 1.00 9.11 C </line>
<line>ATOM 790 CA ASP A 102 21.724 11.537 39.166 1.00 10.20 C </line>
<line>ATOM 798 CA PRO A 103 25.194 10.086 38.244 1.00 10.90 C </line>
<line>ATOM 805 CA GLN A 104 24.525 9.061 34.627 1.00 9.49 C </line>
<line>ATOM 814 CA GLY A 105 23.581 12.605 33.765 1.00 9.41 C </line>
<line>ATOM 818 CA ILE A 106 22.271 12.810 30.199 1.00 10.76 C </line>
<line>ATOM 826 CA ARG A 107 23.174 9.099 29.848 1.00 8.92 C </line>
<line>ATOM 837 CA ALA A 108 19.903 8.143 31.659 1.00 9.96 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.90 12.96 10.63 9.40 11.54 10.93 7.32 5.11 5.50 3.84 </line>
<line>VAL CA 7.13 9.60 7.93 7.08 8.68 9.07 5.95 5.49 3.81 </line>
<line>VAL CA 7.13 7.99 5.52 3.98 6.82 7.25 5.17 3.82 </line>
<line>ARG CA 10.11 11.04 8.97 6.20 8.24 6.69 3.84 </line>
<line>ASP CA 8.44 9.74 9.07 5.81 5.88 3.87 </line>
<line>PRO CA 8.67 8.69 8.98 5.39 3.82 </line>
<line>GLN CA 5.57 4.97 6.22 3.77 </line>
<line>GLY CA 6.15 5.27 3.80 </line>
<line>ILE CA 5.43 3.84 </line>
<line>ARG CA 3.86 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>VAL CA 389</line>
<line>VAL CA 339</line>
<line>ARG CA 241</line>
<line>ASP CA 227</line>
<line>PRO CA 177</line>
<line>GLN CA 227</line>
<line>GLY CA 296</line>
<line>ILE CA 390</line>
<line>ARG CA 313</line>
<line>ALA CA 345</line>
</n14>
</entryChain>
<parallel>
<x>19.652000427246094</x>
<y>3.568000078201294</y>
<z>91.30599975585938</z>
</parallel>
<rotation>
<x>-0.18799999356269836</x>
<y>0.23600000143051147</y>
<z>0.953000009059906</z>
<x>-0.8790000081062317</x>
<y>0.3930000066757202</y>
<z>-0.2709999978542328</z>
<x>-0.4390000104904175</x>
<y>-0.8889999985694885</y>
<z>0.13300000131130219</z>
</rotation>
<rmsd>1.0554929971694946</rmsd>
<dmax>2.3415720462799072</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CKH</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CKHA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 893 CA ASN A 114 22.791 5.632 20.871 1.00 6.96 C </line>
<line>ATOM 901 CA ARG A 115 21.666 8.614 18.772 1.00 10.28 C </line>
<line>ATOM 912 CA CYS A 116 23.385 11.723 20.275 1.00 11.17 C </line>
<line>ATOM 918 CA GLN A 117 26.466 10.592 22.211 1.00 11.26 C </line>
<line>ATOM 927 CA ASN A 118 29.696 11.328 20.369 1.00 13.51 C </line>
<line>ATOM 935 CA ARG A 119 27.813 12.835 17.441 1.00 7.73 C </line>
<line>ATOM 946 CA ASP A 120 27.658 16.174 15.582 1.00 12.70 C </line>
<line>ATOM 954 CA VAL A 121 24.561 17.749 17.182 1.00 14.31 C </line>
<line>ATOM 961 CA ARG A 122 25.113 21.374 16.027 1.00 17.00 C </line>
<line>ATOM 972 CA GLN A 123 22.360 20.875 13.450 1.00 17.05 C </line>
<line>ATOM 981 CA TYR A 124 19.781 20.918 16.228 1.00 13.54 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.26 16.96 16.63 12.79 12.76 9.43 8.97 6.32 6.15 3.82 </line>
<line>ARG CA 12.70 13.38 13.50 9.71 10.16 7.57 8.63 6.23 3.86 </line>
<line>CYS CA 10.67 11.46 10.69 6.87 7.75 5.37 6.32 3.81 </line>
<line>GLN CA 13.68 14.12 12.50 8.95 8.75 5.44 3.79 </line>
<line>ASN CA 14.40 13.89 11.87 8.82 7.11 3.79 </line>
<line>ARG CA 11.46 10.50 9.07 5.90 3.82 </line>
<line>ASP CA 9.22 7.40 5.81 3.83 </line>
<line>VAL CA 5.81 5.34 3.84 </line>
<line>ARG CA 5.36 3.80 </line>
<line>GLN CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 219</line>
<line>ARG CA 258</line>
<line>CYS CA 312</line>
<line>GLN CA 278</line>
<line>ASN CA 194</line>
<line>ARG CA 219</line>
<line>ASP CA 199</line>
<line>VAL CA 286</line>
<line>ARG CA 233</line>
<line>GLN CA 233</line>
<line>TYR CA 338</line>
</n14>
</entryChain>
<parallel>
<x>19.740999221801758</x>
<y>22.641000747680664</y>
<z>109.04100036621094</z>
</parallel>
<rotation>
<x>-0.35899999737739563</x>
<y>0.4009999930858612</y>
<z>0.8429999947547913</z>
<x>-0.7710000276565552</x>
<y>0.38199999928474426</y>
<z>-0.5099999904632568</z>
<x>-0.5260000228881836</x>
<y>-0.8330000042915344</y>
<z>0.1720000058412552</z>
</rotation>
<rmsd>1.2474730014801025</rmsd>
<dmax>2.520250082015991</dmax>
</indel>