NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CL5A-2NOTA
confEVID 1CL5A-2NOTA
pdbIDA 1CL5
pdbIDB 2NOT
pdbChainA A
pdbChainB A
identity 0.33610001206398
indelSize 3
alignment <alignment>
<seq1>SLLEFGKMILEETG--KLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGN--LPDCNPKSDRYKYKRVNGAIVCE-KGTSCENRICECDKAAAICFRQNLNTYSKKYMLYPDFL-CKGELKC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ-----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHGGG-- EEEEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG - </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CL5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CL5A</entryIDChain>
<sequence>CCYGN--LPDCN</sequence>
<secondary-structure>HHGGG-- </secondary-structure>
<atom-coordinate>
<line>ATOM 366 CA CYS A 50 16.854 24.600 54.908 1.00 22.79 C </line>
<line>ATOM 372 CA CYS A 51 18.173 28.077 54.079 1.00 15.12 C </line>
<line>ATOM 378 CA TYR A 52 16.497 28.241 50.655 1.00 17.93 C </line>
<line>ATOM 390 CA GLY A 53 13.381 26.689 52.152 1.00 14.93 C </line>
<line>ATOM 394 CA ASN A 54 13.167 29.595 54.556 1.00 21.39 C </line>
<line>ATOM 402 CA LEU A 55 12.927 32.178 51.787 1.00 22.83 C </line>
<line>ATOM 410 CA PRO A 56 9.272 31.771 50.791 1.00 25.47 C </line>
<line>ATOM 417 CA ASP A 59 9.057 35.137 49.038 1.00 29.30 C </line>
<line>ATOM 425 CA CYS A 61 12.098 34.323 46.861 1.00 26.97 C </line>
<line>ATOM 431 CA ASN A 67 13.156 32.019 44.021 1.00 25.80 C </line>
</atom-coordinate>
<distance-map>
<line> ASN CYS ASP PRO LEU ASN GLY TYR CYS CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 13.68 13.49 14.36 11.22 9.09 6.22 4.90 5.61 3.81 </line>
<line>CYS CA 11.91 11.31 12.58 10.18 7.04 5.25 5.35 3.82 </line>
<line>TYR CA 8.33 8.41 10.27 8.04 5.43 5.30 3.79 </line>
<line>GLY CA 9.72 9.38 9.99 6.68 5.52 3.78 </line>
<line>ASN CA 10.81 9.09 8.83 5.84 3.79 </line>
<line>LEU CA 7.77 5.44 5.59 3.81 </line>
<line>PRO CA 7.81 5.47 3.80 </line>
<line>ASP CA 7.19 3.83 </line>
<line>CYS CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>CYS CA 293</line>
<line>CYS CA 309</line>
<line>TYR CA 336</line>
<line>GLY CA 250</line>
<line>ASN CA 209</line>
<line>LEU CA 225</line>
<line>PRO CA 158</line>
<line>ASP CA 155</line>
<line>CYS CA 218</line>
<line>ASN CA 253</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>DCYSDAEKKGCS</sequence>
<secondary-structure>HHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 394 CA ASP A 50 6.335 13.117 44.957 1.00 2.00 C </line>
<line>ATOM 402 CA CYS A 51 6.291 14.680 41.474 1.00 2.00 C </line>
<line>ATOM 408 CA TYR A 52 3.058 12.941 40.646 1.00 2.00 C </line>
<line>ATOM 420 CA SER A 53 1.652 14.423 43.910 1.00 2.00 C </line>
<line>ATOM 426 CA ASP A 54 2.288 18.071 42.980 1.00 6.55 C </line>
<line>ATOM 434 CA ALA A 55 0.720 17.168 39.669 1.00 2.00 C </line>
<line>ATOM 439 CA GLU A 56 -2.454 15.959 41.385 1.00 3.02 C </line>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
</atom-coordinate>
<distance-map>
<line> SER CYS GLY LYS LYS GLU ALA ASP SER TYR CYS ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.23 13.21 14.60 12.87 10.85 9.90 8.71 6.70 4.97 5.42 3.82 </line>
<line>CYS CA 11.48 10.89 12.84 11.03 10.13 8.84 6.36 5.46 5.25 3.76 </line>
<line>TYR CA 8.14 8.46 10.73 10.01 8.86 6.33 4.93 5.69 3.85 </line>
<line>SER CA 9.16 9.07 9.95 8.77 6.35 5.06 5.14 3.82 </line>
<line>ASP CA 10.03 8.39 8.81 6.33 5.00 5.43 3.77 </line>
<line>ALA CA 6.78 4.92 6.53 5.24 5.44 3.81 </line>
<line>GLU CA 5.45 4.85 5.12 5.43 3.85 </line>
<line>LYS CA 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 8.78 5.58 3.82 </line>
<line>GLY CA 6.37 3.79 </line>
<line>CYS CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASP CA 291</line>
<line>CYS CA 321</line>
<line>TYR CA 344</line>
<line>SER CA 248</line>
<line>ASP CA 212</line>
<line>ALA CA 265</line>
<line>GLU CA 213</line>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
</n14>
</entryChain>
<parallel>
<x>12.515999794006348</x>
<y>12.914999961853027</y>
<z>10.164999961853027</z>
</parallel>
<rotation>
<x>0.7250000238418579</x>
<y>-0.15000000596046448</y>
<z>0.671999990940094</z>
<x>-0.42500001192092896</x>
<y>0.6710000038146973</y>
<z>0.6079999804496765</z>
<x>-0.5419999957084656</x>
<y>-0.7260000109672546</y>
<z>0.4230000078678131</z>
</rotation>
<rmsd>1.9077789783477783</rmsd>
<dmax>4.069958209991455</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CL5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CL5A</entryIDChain>
<sequence>AIVCE-KGTSC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 552 CA ALA A 81 36.361 36.469 51.600 1.00 28.26 C </line>
<line>ATOM 557 CA ILE A 82 32.985 36.409 49.816 1.00 28.72 C </line>
<line>ATOM 565 CA VAL A 83 31.108 39.655 50.370 1.00 32.29 C </line>
<line>ATOM 572 CA CYS A 84 27.431 39.704 49.521 1.00 35.31 C </line>
<line>ATOM 578 CA GLU A 85 26.516 43.114 48.098 1.00 50.83 C </line>
<line>ATOM 587 CA LYS A 86 23.220 44.827 48.935 1.00 58.76 C </line>
<line>ATOM 596 CA GLY A 88 20.746 44.497 46.081 1.00 49.23 C </line>
<line>ATOM 600 CA THR A 89 17.287 43.211 47.010 1.00 43.95 C </line>
<line>ATOM 607 CA SER A 90 16.474 41.450 50.269 1.00 34.38 C </line>
<line>ATOM 613 CA CYS A 91 16.119 38.234 48.291 1.00 27.44 C </line>
</atom-coordinate>
<distance-map>
<line> CYS SER THR GLY LYS GLU CYS VAL ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 20.59 20.54 20.74 18.40 15.80 12.38 9.72 6.27 3.82 </line>
<line>ILE CA 17.03 17.27 17.34 15.14 12.92 9.47 6.46 3.79 </line>
<line>VAL CA 15.20 14.74 14.66 12.22 9.54 6.18 3.77 </line>
<line>CYS CA 11.47 11.12 11.02 8.92 6.66 3.81 </line>
<line>GLU CA 11.49 10.41 9.29 6.27 3.81 </line>
<line>LYS CA 9.71 7.66 6.44 3.79 </line>
<line>GLY CA 8.09 6.71 3.81 </line>
<line>THR CA 5.27 3.79 </line>
<line>SER CA 3.79 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>ALA CA 211</line>
<line>ILE CA 297</line>
<line>VAL CA 258</line>
<line>CYS CA 295</line>
<line>GLU CA 224</line>
<line>LYS CA 181</line>
<line>GLY CA 184</line>
<line>THR CA 191</line>
<line>SER CA 205</line>
<line>CYS CA 265</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>19.211999893188477</x>
<y>23.347000122070312</y>
<z>23.190000534057617</z>
</parallel>
<rotation>
<x>0.796999990940094</x>
<y>0.18199999630451202</y>
<z>0.574999988079071</z>
<x>-0.3779999911785126</x>
<y>0.8939999938011169</y>
<z>0.2409999966621399</z>
<x>-0.4699999988079071</x>
<y>-0.4099999964237213</y>
<z>0.781000018119812</z>
</rotation>
<rmsd>1.5635210275650024</rmsd>
<dmax>3.0354599952697754</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CL5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CL5A</entryIDChain>
<sequence>CFRQNLNTYSKK</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 716 CA CYS A 105 30.785 24.717 54.390 1.00 18.21 C </line>
<line>ATOM 722 CA PHE A 106 32.090 22.826 51.353 1.00 15.00 C </line>
<line>ATOM 733 CA ARG A 107 35.631 24.173 51.732 1.00 12.84 C </line>
<line>ATOM 744 CA GLN A 108 35.687 23.508 55.497 1.00 15.41 C </line>
<line>ATOM 753 CA ASN A 109 34.863 19.820 54.989 1.00 19.09 C </line>
<line>ATOM 761 CA LEU A 110 36.948 19.014 51.940 1.00 19.24 C </line>
<line>ATOM 769 CA ASN A 111 39.038 16.580 53.979 1.00 26.64 C </line>
<line>ATOM 777 CA THR A 112 36.103 14.176 54.355 1.00 26.23 C </line>
<line>ATOM 784 CA TYR A 113 34.714 14.473 50.819 1.00 27.11 C </line>
<line>ATOM 796 CA SER A 114 34.226 10.989 49.396 1.00 27.47 C </line>
<line>ATOM 802 CA LYS A 115 34.010 9.877 45.760 1.00 31.86 C </line>
<line>ATOM 811 CA LYS A 116 31.868 7.048 47.090 1.00 30.41 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS SER TYR THR ASN LEU ASN GLN ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.15 17.47 15.01 11.54 11.81 11.60 8.75 6.40 5.17 5.55 3.81 </line>
<line>PHE CA 16.35 14.24 12.19 8.77 10.00 9.70 6.20 5.47 5.53 3.81 </line>
<line>ARG CA 18.14 15.58 13.46 9.79 10.35 8.62 5.33 5.49 3.82 </line>
<line>GLN CA 18.87 16.84 14.00 10.22 9.41 7.84 5.87 3.81 </line>
<line>ASN CA 15.31 13.59 10.47 6.78 5.81 5.38 3.78 </line>
<line>LEU CA 13.87 11.42 8.85 5.18 5.47 3.80 </line>
<line>ASN CA 13.77 11.74 8.68 5.76 3.81 </line>
<line>THR CA 11.02 9.84 6.19 3.81 </line>
<line>TYR CA 8.78 6.87 3.79 </line>
<line>SER CA 5.14 3.81 </line>
<line>LYS CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 357</line>
<line>PHE CA 385</line>
<line>ARG CA 307</line>
<line>GLN CA 236</line>
<line>ASN CA 263</line>
<line>LEU CA 270</line>
<line>ASN CA 191</line>
<line>THR CA 222</line>
<line>TYR CA 296</line>
<line>SER CA 254</line>
<line>LYS CA 231</line>
<line>LYS CA 211</line>
</n14>
</entryChain>
<parallel>
<x>-13.934000015258789</x>
<y>-15.848999977111816</y>
<z>-14.878000259399414</z>
</parallel>
<rotation>
<x>0.6959999799728394</x>
<y>-0.3479999899864197</y>
<z>-0.628000020980835</z>
<x>-0.3610000014305115</x>
<y>0.5860000252723694</y>
<z>-0.7260000109672546</z>
<x>0.6200000047683716</x>
<y>0.7319999933242798</y>
<z>0.28200000524520874</z>
</rotation>
<rmsd>0.9706199765205383</rmsd>
<dmax>2.023350954055786</dmax>
</indel>