NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CLMA-1QX5T
confEVID 1CLMA-1QX5T
pdbIDA 1CLM
pdbIDB 1QX5
pdbChainA A
pdbChainB T
identity 0.833299994468689
indelSize 2
alignment <alignment>
<seq1>--LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQ-DSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS</seq1>
<seq2>DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVF-DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT-</seq2>
<ss_1>-- HHHHHHHHHHHHHH EEE HHHHHHHHHH HHHHHHHHH EEEHHHHHHHHHHHHHH-HHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHHHHH </ss_1>
<ss_2> HHHHHHHHHHHHH EEEE HHHHHHHH HHHHHHHH EEEEEHHHHHHHHHH HHHHHHHHGGGG- HHHHHHIIIII HHHHHHHHHH HHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>KMKEQ-DSEEE</sequence>
<secondary-structure>HHHHH-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 549 CA LYS A 75 -6.895 35.863 20.353 1.00 45.26 C </line>
<line>ATOM 558 CA MET A 76 -7.429 32.865 22.597 1.00 48.77 C </line>
<line>ATOM 566 CA LYS A 77 -8.387 30.563 19.676 1.00 48.69 C </line>
<line>ATOM 575 CA GLU A 78 -5.193 31.734 17.878 1.00 48.18 C </line>
<line>ATOM 584 CA GLN A 79 -3.015 31.142 20.903 1.00 46.59 C </line>
<line>ATOM 593 CA ASP A 80 -4.320 27.538 21.062 1.00 45.20 C </line>
<line>ATOM 601 CA SER A 81 -3.483 26.852 17.403 1.00 40.51 C </line>
<line>ATOM 607 CA GLU A 82 0.026 28.023 18.245 1.00 41.69 C </line>
<line>ATOM 616 CA GLU A 83 0.323 25.920 21.457 1.00 41.18 C </line>
<line>ATOM 625 CA GLU A 84 -0.632 22.907 19.382 1.00 37.81 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLU GLU SER ASP GLN GLU LYS MET LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 14.42 12.34 10.67 10.08 8.74 6.14 5.11 5.55 3.78 </line>
<line>MET CA 12.48 10.47 9.90 8.87 6.36 5.03 5.34 3.84 </line>
<line>LYS CA 10.90 10.03 8.90 6.56 5.25 5.54 3.85 </line>
<line>GLU CA 10.05 8.78 6.41 5.19 5.34 3.77 </line>
<line>GLN CA 8.71 6.22 5.10 5.56 3.84 </line>
<line>ASP CA 6.15 4.93 5.20 3.82 </line>
<line>SER CA 5.25 5.64 3.79 </line>
<line>GLU CA 5.28 3.85 </line>
<line>GLU CA 3.78 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>LYS CA 192</line>
<line>MET CA 189</line>
<line>LYS CA 160</line>
<line>GLU CA 167</line>
<line>GLN CA 161</line>
<line>ASP CA 159</line>
<line>SER CA 190</line>
<line>GLU CA 208</line>
<line>GLU CA 184</line>
<line>GLU CA 190</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1QX5</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>1QX5T</entryIDChain>
<sequence>KMKDTDSEEEI</sequence>
<secondary-structure>H HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6278 CA LYS T 75 26.786 10.723 -27.605 1.00128.27 C </line>
<line>ATOM 6287 CA MET T 76 29.408 9.273 -25.260 1.00137.32 C </line>
<line>ATOM 6295 CA LYS T 77 31.512 8.909 -28.394 1.00138.85 C </line>
<line>ATOM 6304 CA ASP T 78 32.486 12.599 -28.590 1.00138.34 C </line>
<line>ATOM 6312 CA THR T 79 32.894 13.102 -24.834 1.00134.60 C </line>
<line>ATOM 6319 CA ASP T 80 36.232 14.422 -23.587 1.00128.12 C </line>
<line>ATOM 6327 CA SER T 81 37.218 14.442 -19.924 1.00119.57 C </line>
<line>ATOM 6333 CA GLU T 82 38.803 17.899 -20.075 1.00109.59 C </line>
<line>ATOM 6342 CA GLU T 83 35.321 19.372 -19.808 1.00103.12 C </line>
<line>ATOM 6351 CA GLU T 84 34.113 16.975 -17.117 1.00 97.40 C </line>
<line>ATOM 6360 CA ILE T 85 37.028 18.290 -15.033 1.00 89.83 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLU GLU GLU SER ASP THR ASP LYS MET LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 17.89 14.24 14.44 15.89 13.48 10.91 7.12 6.08 5.12 3.80 </line>
<line>MET CA 15.62 12.16 12.91 13.77 10.78 8.71 5.20 5.62 3.79 </line>
<line>LYS CA 17.23 14.11 14.06 14.25 11.62 8.71 5.67 3.82 </line>
<line>ASP CA 15.39 12.39 11.45 11.85 10.04 6.51 3.81 </line>
<line>THR CA 11.83 8.72 8.39 8.98 6.68 3.80 </line>
<line>ASP CA 9.42 7.27 6.29 5.57 3.79 </line>
<line>SER CA 6.23 4.89 5.28 3.81 </line>
<line>GLU CA 5.36 5.62 3.79 </line>
<line>GLU CA 5.19 3.80 </line>
<line>GLU CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LYS CA 280</line>
<line>MET CA 286</line>
<line>LYS CA 193</line>
<line>ASP CA 179</line>
<line>THR CA 242</line>
<line>ASP CA 175</line>
<line>SER CA 182</line>
<line>GLU CA 144</line>
<line>GLU CA 195</line>
<line>GLU CA 232</line>
<line>ILE CA 199</line>
</n14>
</entryChain>
<parallel>
<x>-37.89099884033203</x>
<y>17.283000946044922</y>
<z>44.07600021362305</z>
</parallel>
<rotation>
<x>-0.23800000548362732</x>
<y>-0.8830000162124634</y>
<z>-0.4050000011920929</z>
<x>0.800000011920929</x>
<y>0.057999998331069946</y>
<z>-0.597000002861023</z>
<x>0.5509999990463257</x>
<y>-0.4659999907016754</y>
<z>0.6919999718666077</z>
</rotation>
<rmsd>2.936945915222168</rmsd>
<dmax>4.504726886749268</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1QX5</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>1QX5T</entryIDChain>
<sequence>AFRVF-DKDGN</sequence>
<secondary-structure>HGGGG- </secondary-structure>
<atom-coordinate>
<line>ATOM 6388 CA ALA T 88 33.644 19.779 -11.282 1.00 68.64 C </line>
<line>ATOM 6393 CA PHE T 89 35.829 22.764 -10.505 1.00 65.57 C </line>
<line>ATOM 6404 CA ARG T 90 33.018 25.038 -11.664 1.00 66.78 C </line>
<line>ATOM 6415 CA VAL T 91 30.945 23.747 -8.729 1.00 59.87 C </line>
<line>ATOM 6422 CA PHE T 92 33.342 25.676 -6.476 1.00 65.77 C </line>
<line>ATOM 6433 CA ASP T 93 32.673 28.790 -8.617 1.00 63.94 C </line>
<line>ATOM 6441 CA LYS T 94 29.507 30.445 -7.343 1.00 70.66 C </line>
<line>ATOM 6450 CA ASP T 95 29.532 33.083 -10.149 1.00 70.15 C </line>
<line>ATOM 6458 CA GLY T 96 31.089 32.245 -13.522 1.00 68.13 C </line>
<line>ATOM 6462 CA ASN T 97 34.245 34.199 -12.958 1.00 69.42 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP LYS ASP PHE VAL ARG PHE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.53 12.92 13.97 12.10 9.45 7.61 5.44 5.31 3.78 </line>
<line>PHE CA 11.80 11.02 12.09 10.44 7.06 5.56 5.29 3.80 </line>
<line>ARG CA 9.33 7.69 8.90 7.76 4.85 5.24 3.82 </line>
<line>VAL CA 11.75 9.76 9.55 6.99 5.33 3.81 </line>
<line>PHE CA 10.75 9.89 9.10 6.18 3.84 </line>
<line>ASP CA 7.11 6.21 5.54 3.79 </line>
<line>LYS CA 8.25 6.63 3.85 </line>
<line>ASP CA 5.60 3.81 </line>
<line>GLY CA 3.75 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 266</line>
<line>PHE CA 252</line>
<line>ARG CA 237</line>
<line>VAL CA 250</line>
<line>PHE CA 208</line>
<line>ASP CA 179</line>
<line>LYS CA 149</line>
<line>ASP CA 122</line>
<line>GLY CA 130</line>
<line>ASN CA 120</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>EAFKVFDRDGN</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 650 CA GLU A 87 3.965 20.925 20.963 1.00 29.16 C </line>
<line>ATOM 659 CA ALA A 88 3.944 18.947 17.707 1.00 24.97 C </line>
<line>ATOM 664 CA PHE A 89 7.337 20.465 16.554 1.00 19.08 C </line>
<line>ATOM 675 CA LYS A 90 8.808 19.620 19.920 1.00 23.71 C </line>
<line>ATOM 684 CA VAL A 91 7.945 15.942 19.679 1.00 25.45 C </line>
<line>ATOM 691 CA PHE A 92 9.754 15.794 16.277 1.00 21.77 C </line>
<line>ATOM 702 CA ASP A 93 12.857 17.681 17.468 1.00 22.02 C </line>
<line>ATOM 710 CA ARG A 94 14.045 14.831 19.628 1.00 29.24 C </line>
<line>ATOM 721 CA ASP A 95 17.255 16.588 20.665 1.00 29.52 C </line>
<line>ATOM 729 CA GLY A 96 15.717 20.042 21.392 1.00 30.43 C </line>
<line>ATOM 733 CA ASN A 97 18.129 21.879 18.997 1.00 29.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ARG ASP PHE VAL LYS PHE ALA GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.33 11.79 13.98 11.85 10.09 9.04 6.51 5.12 5.57 3.81 </line>
<line>ALA CA 14.54 12.38 13.84 11.08 9.01 6.76 5.38 5.39 3.89 </line>
<line>PHE CA 11.16 9.69 11.41 9.28 6.25 5.27 5.53 3.77 </line>
<line>LYS CA 9.64 7.08 9.01 7.10 5.12 5.37 3.79 </line>
<line>VAL CA 11.81 8.95 9.38 6.20 5.66 3.86 </line>
<line>PHE CA 10.70 8.93 8.73 5.53 3.82 </line>
<line>ASP CA 6.91 5.40 5.55 3.77 </line>
<line>ARG CA 8.17 5.75 3.80 </line>
<line>ASP CA 5.62 3.85 </line>
<line>GLY CA 3.86 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLU CA 210</line>
<line>ALA CA 266</line>
<line>PHE CA 315</line>
<line>LYS CA 260</line>
<line>VAL CA 260</line>
<line>PHE CA 324</line>
<line>ASP CA 275</line>
<line>ARG CA 228</line>
<line>ASP CA 175</line>
<line>GLY CA 191</line>
<line>ASN CA 182</line>
</n14>
</entryChain>
<parallel>
<x>22.79199981689453</x>
<y>8.039999961853027</y>
<z>-28.41900062561035</z>
</parallel>
<rotation>
<x>-0.46000000834465027</x>
<y>0.8709999918937683</y>
<z>-0.17000000178813934</z>
<x>-0.22699999809265137</x>
<y>-0.3009999990463257</y>
<z>-0.9259999990463257</z>
<x>-0.8579999804496765</x>
<y>-0.3880000114440918</y>
<z>0.335999995470047</z>
</rotation>
<rmsd>1.6855239868164062</rmsd>
<dmax>2.3323910236358643</dmax>
</indel>