NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CLMA-2BCBA
confEVID 1CLMA-2BCBA
pdbIDA 1CLM
pdbIDB 2BCB
pdbChainA A
pdbChainB A
identity 0.192300006747246
indelSize 3
alignment <alignment>
<seq1>LTEEQIAEFKEAFALFDKDGD--GTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS</seq1>
<seq2>---KSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEEL---DKNGDGEVSFEEFQVLVKKISQ----------------------------------------------------------------------</seq2>
<ss_1> HHHHHHHHHHHHHH --EEE HHHHHHHHHH ----- HHHHHHHHH EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHHHHH </ss_1>
<ss_2>--- HHHHHHHHHHHH EEEEEHHHHHHHHHH HHHHHHHH--- EEEEEHHHHHHHHH ----------------------------------------------------------------------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>DKDGD--GTITT</sequence>
<secondary-structure>H --EEE H</secondary-structure>
<atom-coordinate>
<line>ATOM 135 CA ASP A 20 -9.625 51.161 31.532 1.00 16.68 C </line>
<line>ATOM 143 CA LYS A 21 -7.776 53.381 34.020 1.00 20.86 C </line>
<line>ATOM 152 CA ASP A 22 -10.516 55.875 34.751 1.00 20.74 C </line>
<line>ATOM 160 CA GLY A 23 -13.469 53.528 34.855 1.00 18.32 C </line>
<line>ATOM 164 CA ASP A 24 -15.572 55.043 32.022 1.00 16.32 C </line>
<line>ATOM 172 CA GLY A 25 -16.173 51.846 30.010 1.00 13.73 C </line>
<line>ATOM 176 CA THR A 26 -13.703 52.661 27.179 1.00 11.65 C </line>
<line>ATOM 183 CA ILE A 27 -10.013 52.238 26.504 1.00 10.72 C </line>
<line>ATOM 191 CA THR A 28 -8.365 55.127 24.667 1.00 15.37 C </line>
<line>ATOM 198 CA THR A 29 -4.913 55.329 23.053 1.00 19.36 C </line>
</atom-coordinate>
<distance-map>
<line> THR THR ILE THR GLY ASP GLY ASP LYS ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 10.56 8.03 5.16 6.15 6.76 7.12 5.61 5.78 3.81 </line>
<line>LYS CA 11.50 9.53 7.92 9.08 9.43 8.22 5.76 3.78 </line>
<line>ASP CA 12.98 10.34 9.03 8.82 8.41 5.81 3.77 </line>
<line>GLY CA 14.69 11.51 9.13 7.73 5.80 3.84 </line>
<line>ASP CA 13.93 10.30 8.32 5.71 3.82 </line>
<line>GLY CA 13.69 10.01 7.10 3.84 </line>
<line>THR CA 10.07 6.39 3.78 </line>
<line>ILE CA 6.89 3.80 </line>
<line>THR CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASP CA 275</line>
<line>LYS CA 224</line>
<line>ASP CA 166</line>
<line>GLY CA 180</line>
<line>ASP CA 176</line>
<line>GLY CA 233</line>
<line>THR CA 290</line>
<line>ILE CA 364</line>
<line>THR CA 339</line>
<line>THR CA 323</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BCB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BCBA</entryIDChain>
<sequence>AAKEGDPNQLSK</sequence>
<secondary-structure>H EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 226 CA ALA A 14 -1.227 5.673 6.598 1.00 0.00 C </line>
<line>ATOM 236 CA ALA A 15 -2.811 7.331 9.673 1.00 0.00 C </line>
<line>ATOM 246 CA LYS A 16 -0.530 5.339 12.054 1.00 0.00 C </line>
<line>ATOM 268 CA GLU A 17 2.800 7.128 11.348 1.00 0.00 C </line>
<line>ATOM 283 CA GLY A 18 4.174 9.658 8.850 1.00 0.00 C </line>
<line>ATOM 290 CA ASP A 19 0.843 11.459 8.119 1.00 0.00 C </line>
<line>ATOM 302 CA PRO A 20 -2.423 9.894 6.729 1.00 0.00 C </line>
<line>ATOM 316 CA ASN A 21 -1.266 10.776 3.168 1.00 0.00 C </line>
<line>ATOM 330 CA GLN A 22 1.700 8.304 3.264 1.00 0.00 C </line>
<line>ATOM 347 CA LEU A 23 2.295 4.587 3.950 1.00 0.00 C </line>
<line>ATOM 366 CA SER A 24 5.630 4.037 5.720 1.00 0.00 C </line>
<line>ATOM 377 CA LYS A 25 7.607 0.936 4.613 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> LYS SER LEU GLN ASN PRO ASP GLY GLU LYS ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.22 7.10 4.54 5.16 6.15 4.39 6.33 7.08 6.40 5.51 3.84 </line>
<line>ALA CA 13.23 9.89 8.15 7.90 7.52 3.92 5.73 7.41 5.86 3.85 </line>
<line>LYS CA 11.87 8.93 8.62 9.54 10.44 7.26 7.40 7.14 3.85 </line>
<line>GLU CA 10.33 7.02 7.84 8.24 9.84 7.50 5.75 3.81 </line>
<line>GLY CA 10.29 6.60 7.30 6.26 7.95 6.93 3.86 </line>
<line>ASP CA 12.99 9.15 8.17 5.85 5.42 3.88 </line>
<line>PRO CA 13.61 10.01 7.63 5.62 3.85 </line>
<line>ASN CA 13.33 9.97 7.18 3.86 </line>
<line>GLN CA 9.54 6.30 3.83 </line>
<line>LEU CA 6.48 3.82 </line>
<line>SER CA 3.84 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 633</line>
<line>ALA CA 457</line>
<line>LYS CA 413</line>
<line>GLU CA 398</line>
<line>GLY CA 393</line>
<line>ASP CA 368</line>
<line>PRO CA 458</line>
<line>ASN CA 496</line>
<line>GLN CA 639</line>
<line>LEU CA 796</line>
<line>SER CA 664</line>
<line>LYS CA 668</line>
</n14>
</entryChain>
<parallel>
<x>-12.748000144958496</x>
<y>45.867000579833984</y>
<z>23.996000289916992</z>
</parallel>
<rotation>
<x>-0.4569999873638153</x>
<y>0.8190000057220459</y>
<z>-0.3479999899864197</z>
<x>-0.8809999823570251</x>
<y>-0.3610000014305115</y>
<z>0.30799999833106995</z>
<x>0.12700000405311584</x>
<y>0.44699999690055847</y>
<z>0.8859999775886536</z>
</rotation>
<rmsd>2.3929710388183594</rmsd>
<dmax>3.639981985092163</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>VMRSL-----GQNPT</sequence>
<secondary-structure>HHHH ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 242 CA VAL A 35 -0.316 49.955 30.122 1.00 27.94 C </line>
<line>ATOM 249 CA MET A 36 2.414 49.400 27.483 1.00 32.30 C </line>
<line>ATOM 257 CA ARG A 37 4.723 51.809 29.375 1.00 34.74 C </line>
<line>ATOM 268 CA SER A 38 4.234 49.846 32.567 1.00 37.39 C </line>
<line>ATOM 274 CA LEU A 39 5.413 46.712 30.717 1.00 38.05 C </line>
<line>ATOM 282 CA GLY A 40 8.647 48.496 29.565 1.00 37.57 C </line>
<line>ATOM 286 CA GLN A 41 7.593 49.321 25.967 1.00 39.19 C </line>
<line>ATOM 295 CA ASN A 42 7.049 52.985 25.028 1.00 39.14 C </line>
<line>ATOM 303 CA PRO A 43 4.980 53.138 21.760 1.00 36.55 C </line>
<line>ATOM 310 CA THR A 44 4.455 56.395 19.813 1.00 36.83 C </line>
</atom-coordinate>
<distance-map>
<line> THR PRO ASN GLN GLY LEU SER ARG MET VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.06 10.40 9.45 8.96 9.10 6.61 5.17 5.42 3.84 </line>
<line>MET CA 10.58 7.30 6.35 5.40 6.63 5.17 5.42 3.84 </line>
<line>ARG CA 10.61 7.73 5.07 5.10 5.14 5.32 3.78 </line>
<line>SER CA 14.34 11.32 8.64 7.42 5.51 3.83 </line>
<line>LEU CA 14.61 11.03 8.63 5.84 3.87 </line>
<line>GLY CA 13.23 9.79 6.58 3.84 </line>
<line>GLN CA 9.89 6.25 3.82 </line>
<line>ASN CA 6.75 3.87 </line>
<line>PRO CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 249</line>
<line>MET CA 223</line>
<line>ARG CA 174</line>
<line>SER CA 146</line>
<line>LEU CA 127</line>
<line>GLY CA 107</line>
<line>GLN CA 142</line>
<line>ASN CA 158</line>
<line>PRO CA 189</line>
<line>THR CA 168</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2BCB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BCBA</entryIDChain>
<sequence>LLQTEFPSLLKGGST</sequence>
<secondary-structure>HHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 489 CA LEU A 31 -1.603 -3.042 5.649 1.00 0.00 C </line>
<line>ATOM 508 CA LEU A 32 -0.892 -5.631 2.940 1.00 0.00 C </line>
<line>ATOM 527 CA GLN A 33 -0.790 -8.357 5.573 1.00 0.00 C </line>
<line>ATOM 544 CA THR A 34 -4.276 -7.543 6.884 1.00 0.00 C </line>
<line>ATOM 558 CA GLU A 35 -5.945 -6.435 3.631 1.00 0.00 C </line>
<line>ATOM 573 CA PHE A 36 -4.315 -8.349 0.741 1.00 0.00 C </line>
<line>ATOM 593 CA PRO A 37 -2.459 -11.472 2.061 1.00 0.00 C </line>
<line>ATOM 607 CA SER A 38 -4.041 -13.704 -0.605 1.00 0.00 C </line>
<line>ATOM 618 CA LEU A 39 -4.758 -10.904 -3.115 1.00 0.00 C </line>
<line>ATOM 637 CA LEU A 40 -1.033 -10.139 -3.478 1.00 0.00 C </line>
<line>ATOM 656 CA LYS A 41 -0.930 -13.492 -5.407 1.00 0.00 C </line>
<line>ATOM 678 CA GLY A 42 2.848 -13.512 -4.786 1.00 0.00 C </line>
<line>ATOM 685 CA GLY A 43 5.287 -12.050 -2.228 1.00 0.00 C </line>
<line>ATOM 692 CA SER A 44 8.881 -10.770 -2.044 1.00 0.00 C </line>
<line>ATOM 703 CA THR A 45 11.298 -8.939 0.275 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER GLY GLY LYS LEU LEU SER PRO PHE GLU THR GLN LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 15.17 15.13 13.81 15.44 15.23 11.58 12.19 12.60 9.20 7.72 5.87 5.38 5.38 3.81 </line>
<line>LEU CA 12.91 12.11 10.30 11.65 11.47 7.84 8.91 9.36 6.11 4.89 5.16 5.54 3.79 </line>
<line>GLN CA 13.21 12.54 10.56 12.13 12.12 9.23 9.89 8.79 4.98 5.98 5.83 3.81 </line>
<line>THR CA 16.98 16.22 13.96 14.92 14.06 11.16 10.56 9.70 6.48 6.20 3.82 </line>
<line>GLU CA 17.74 16.46 13.86 14.08 12.52 9.40 8.18 8.63 6.32 3.83 </line>
<line>PHE CA 15.63 13.70 10.71 10.42 8.70 5.64 4.65 5.53 3.87 </line>
<line>PRO CA 14.10 12.08 8.87 8.90 7.89 5.87 5.69 3.82 </line>
<line>SER CA 16.09 13.33 9.61 8.06 5.73 5.48 3.83 </line>
<line>LEU CA 16.53 13.68 10.15 8.21 5.16 3.82 </line>
<line>LEU CA 12.95 10.04 6.72 5.31 3.87 </line>
<line>LYS CA 14.23 10.72 7.13 3.83 </line>
<line>GLY CA 10.86 7.17 3.82 </line>
<line>GLY CA 7.22 3.82 </line>
<line>SER CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>LEU CA 730</line>
<line>LEU CA 767</line>
<line>GLN CA 541</line>
<line>THR CA 462</line>
<line>GLU CA 581</line>
<line>PHE CA 599</line>
<line>PRO CA 445</line>
<line>SER CA 346</line>
<line>LEU CA 445</line>
<line>LEU CA 528</line>
<line>LYS CA 344</line>
<line>GLY CA 381</line>
<line>GLY CA 443</line>
<line>SER CA 377</line>
<line>THR CA 337</line>
</n14>
</entryChain>
<parallel>
<x>5.756999969482422</x>
<y>58.573001861572266</y>
<z>27.320999145507812</z>
</parallel>
<rotation>
<x>-0.11800000071525574</x>
<y>0.6880000233650208</y>
<z>-0.7160000205039978</z>
<x>-0.8700000047683716</x>
<y>-0.4189999997615814</y>
<z>-0.25999999046325684</z>
<x>-0.4790000021457672</x>
<y>0.5920000076293945</y>
<z>0.6480000019073486</z>
</rotation>
<rmsd>3.577533006668091</rmsd>
<dmax>5.490009784698486</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2BCB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2BCBA</entryIDChain>
<sequence>LFEEL---DKNGD</sequence>
<secondary-structure>HHHHH--- </secondary-structure>
<atom-coordinate>
<line>ATOM 763 CA LEU A 49 8.348 -4.733 -2.807 1.00 0.00 C </line>
<line>ATOM 782 CA PHE A 50 7.986 -1.290 -1.207 1.00 0.00 C </line>
<line>ATOM 802 CA GLU A 51 10.739 -0.057 -3.568 1.00 0.00 C </line>
<line>ATOM 817 CA GLU A 52 8.845 -1.337 -6.642 1.00 0.00 C </line>
<line>ATOM 832 CA LEU A 53 5.777 0.360 -5.158 1.00 0.00 C </line>
<line>ATOM 851 CA ASP A 54 7.678 3.585 -4.264 1.00 0.00 C </line>
<line>ATOM 863 CA LYS A 55 7.236 5.411 -7.608 1.00 0.00 C </line>
<line>ATOM 885 CA ASN A 56 8.312 8.641 -5.844 1.00 0.00 C </line>
<line>ATOM 899 CA GLY A 57 7.915 8.217 -2.082 1.00 0.00 C </line>
<line>ATOM 906 CA ASP A 58 11.598 7.991 -1.051 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASN LYS ASP LEU GLU GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.25 12.98 13.71 11.28 8.47 6.17 5.15 5.31 3.81 </line>
<line>PHE CA 9.96 9.55 10.97 9.30 5.76 4.82 5.50 3.83 </line>
<line>GLU CA 8.48 8.87 9.31 7.65 4.81 5.23 3.83 </line>
<line>GLU CA 11.22 10.63 10.02 7.00 5.59 3.81 </line>
<line>LEU CA 10.44 8.70 8.69 5.80 3.85 </line>
<line>ASP CA 6.72 5.13 5.33 3.84 </line>
<line>LYS CA 8.29 6.23 3.83 </line>
<line>ASN CA 5.85 3.81 </line>
<line>GLY CA 3.83 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 591</line>
<line>PHE CA 672</line>
<line>GLU CA 510</line>
<line>GLU CA 533</line>
<line>LEU CA 694</line>
<line>ASP CA 586</line>
<line>LYS CA 455</line>
<line>ASN CA 375</line>
<line>GLY CA 484</line>
<line>ASP CA 378</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>LQDMINEVDADGN</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 340 CA LEU A 48 -1.094 53.085 19.472 1.00 26.05 C </line>
<line>ATOM 348 CA GLN A 49 -3.476 54.185 16.736 1.00 24.48 C </line>
<line>ATOM 357 CA ASP A 50 -2.829 51.117 14.673 1.00 24.41 C </line>
<line>ATOM 365 CA MET A 51 -3.472 48.890 17.688 1.00 22.32 C </line>
<line>ATOM 373 CA ILE A 52 -6.832 50.552 18.368 1.00 19.65 C </line>
<line>ATOM 381 CA ASN A 53 -7.871 50.487 14.654 1.00 23.35 C </line>
<line>ATOM 389 CA GLU A 54 -7.518 46.707 14.572 1.00 28.94 C </line>
<line>ATOM 398 CA VAL A 55 -10.030 46.284 17.463 1.00 24.14 C </line>
<line>ATOM 405 CA ASP A 56 -12.278 49.306 17.004 1.00 21.84 C </line>
<line>ATOM 413 CA ALA A 57 -15.244 47.982 15.086 1.00 22.22 C </line>
<line>ATOM 418 CA ASP A 58 -17.678 50.955 15.180 1.00 22.82 C </line>
<line>ATOM 426 CA GLY A 59 -14.972 53.574 14.353 1.00 20.50 C </line>
<line>ATOM 430 CA ASN A 60 -15.576 55.804 17.400 1.00 15.68 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ALA ASP VAL GLU ASN ILE MET ASP GLN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.88 14.80 17.26 15.67 12.06 11.41 10.29 8.71 6.37 5.14 5.47 3.79 </line>
<line>GLN CA 12.23 11.76 14.65 13.40 10.07 10.29 8.77 6.11 5.21 5.38 3.75 </line>
<line>ASP CA 13.85 12.39 14.86 12.81 9.90 9.11 6.44 5.08 5.48 3.80 </line>
<line>MET CA 13.94 12.86 14.57 12.09 8.84 7.06 5.55 5.58 3.81 </line>
<line>ILE CA 10.25 9.57 11.31 9.39 5.75 5.41 5.45 3.86 </line>
<line>ASN CA 9.76 7.75 9.83 7.80 5.13 5.50 3.80 </line>
<line>GLU CA 12.48 10.14 11.03 7.85 5.94 3.85 </line>
<line>VAL CA 11.02 9.34 9.25 5.98 3.79 </line>
<line>ASP CA 7.30 5.70 5.93 3.77 </line>
<line>ALA CA 8.16 5.65 3.84 </line>
<line>ASP CA 5.73 3.86 </line>
<line>GLY CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 253</line>
<line>GLN CA 220</line>
<line>ASP CA 192</line>
<line>MET CA 288</line>
<line>ILE CA 313</line>
<line>ASN CA 226</line>
<line>GLU CA 242</line>
<line>VAL CA 286</line>
<line>ASP CA 249</line>
<line>ALA CA 189</line>
<line>ASP CA 147</line>
<line>GLY CA 155</line>
<line>ASN CA 170</line>
</n14>
</entryChain>
<parallel>
<x>15.977999687194824</x>
<y>-49.4370002746582</y>
<z>-21.413000106811523</z>
</parallel>
<rotation>
<x>0.30000001192092896</x>
<y>-0.9449999928474426</y>
<z>0.13099999725818634</z>
<x>-0.12600000202655792</x>
<y>0.09700000286102295</y>
<z>0.9869999885559082</z>
<x>-0.9459999799728394</x>
<y>-0.31299999356269836</y>
<z>-0.09000000357627869</z>
</rotation>
<rmsd>2.475119113922119</rmsd>
<dmax>3.257874011993408</dmax>
</indel>