NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CLMA-4ICBA
confEVID 1CLMA-4ICBA
pdbIDA 1CLM
pdbIDB 4ICB
pdbChainA A
pdbChainB A
identity 0.120800003409386
indelSize 2
alignment <alignment>
<seq1>-LTEEQIAEFKEAFALFDKDGD--GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEF---VRMMVS</seq1>
<seq2>MKS---PEELKGIFEKYAAKEGDPNQLSKEELK------------------------------------LLLQTEFPSLLK--------------------------------GPSTLDELFEEL---DKNGDGEVSFEEFQVLVKKISQ</seq2>
<ss_1>- HHHHHHHHHHHHHH --EEE HHHHHHHHHH HHHHHHHHH EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHH---HHH </ss_1>
<ss_2> ---HHHHHHHHHHHGGG HHHHH------------------------------------HHHHHH -------------------------------- HHHHHHHH--- HHHGGGGHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>DKDGD--GTITT</sequence>
<secondary-structure>H --EEE H</secondary-structure>
<atom-coordinate>
<line>ATOM 135 CA ASP A 20 -9.625 51.161 31.532 1.00 16.68 C </line>
<line>ATOM 143 CA LYS A 21 -7.776 53.381 34.020 1.00 20.86 C </line>
<line>ATOM 152 CA ASP A 22 -10.516 55.875 34.751 1.00 20.74 C </line>
<line>ATOM 160 CA GLY A 23 -13.469 53.528 34.855 1.00 18.32 C </line>
<line>ATOM 164 CA ASP A 24 -15.572 55.043 32.022 1.00 16.32 C </line>
<line>ATOM 172 CA GLY A 25 -16.173 51.846 30.010 1.00 13.73 C </line>
<line>ATOM 176 CA THR A 26 -13.703 52.661 27.179 1.00 11.65 C </line>
<line>ATOM 183 CA ILE A 27 -10.013 52.238 26.504 1.00 10.72 C </line>
<line>ATOM 191 CA THR A 28 -8.365 55.127 24.667 1.00 15.37 C </line>
<line>ATOM 198 CA THR A 29 -4.913 55.329 23.053 1.00 19.36 C </line>
</atom-coordinate>
<distance-map>
<line> THR THR ILE THR GLY ASP GLY ASP LYS ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 10.56 8.03 5.16 6.15 6.76 7.12 5.61 5.78 3.81 </line>
<line>LYS CA 11.50 9.53 7.92 9.08 9.43 8.22 5.76 3.78 </line>
<line>ASP CA 12.98 10.34 9.03 8.82 8.41 5.81 3.77 </line>
<line>GLY CA 14.69 11.51 9.13 7.73 5.80 3.84 </line>
<line>ASP CA 13.93 10.30 8.32 5.71 3.82 </line>
<line>GLY CA 13.69 10.01 7.10 3.84 </line>
<line>THR CA 10.07 6.39 3.78 </line>
<line>ILE CA 6.89 3.80 </line>
<line>THR CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ASP CA 275</line>
<line>LYS CA 224</line>
<line>ASP CA 166</line>
<line>GLY CA 180</line>
<line>ASP CA 176</line>
<line>GLY CA 233</line>
<line>THR CA 290</line>
<line>ILE CA 364</line>
<line>THR CA 339</line>
<line>THR CA 323</line>
</n14>
</entryChain>
<entryChain>
<pdbID>4ICB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>4ICBA</entryIDChain>
<sequence>AAKEGDPNQLSK</sequence>
<secondary-structure>GGG H</secondary-structure>
<atom-coordinate>
<line>ATOM 117 CA ALA A 14 19.171 19.596 2.991 1.00 9.52 C </line>
<line>ATOM 122 CA ALA A 15 20.229 22.988 1.523 1.00 9.87 C </line>
<line>ATOM 127 CA LYS A 16 19.525 24.980 4.736 1.00 11.30 C </line>
<line>ATOM 136 CA GLU A 17 22.911 24.507 6.437 1.00 10.77 C </line>
<line>ATOM 145 CA GLY A 18 26.294 22.779 6.077 1.00 10.94 C </line>
<line>ATOM 149 CA ASP A 19 26.394 20.156 3.276 1.00 8.35 C </line>
<line>ATOM 157 CA PRO A 20 23.764 21.500 0.837 1.00 9.41 C </line>
<line>ATOM 164 CA ASN A 21 23.089 17.931 -0.370 1.00 10.97 C </line>
<line>ATOM 172 CA GLN A 22 22.771 16.166 2.946 1.00 6.47 C </line>
<line>ATOM 181 CA LEU A 23 20.666 16.517 6.110 1.00 6.69 C </line>
<line>ATOM 189 CA SER A 24 22.197 17.468 9.459 1.00 8.65 C </line>
<line>ATOM 195 CA LYS A 25 20.221 16.283 12.582 1.00 10.81 C </line>
</atom-coordinate>
<distance-map>
<line> LYS SER LEU GLN ASN PRO ASP GLY GLU LYS ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.20 7.45 4.63 4.97 5.42 5.42 7.25 8.39 7.07 5.67 3.84 </line>
<line>ALA CA 12.93 9.87 7.94 7.42 6.11 3.90 7.01 7.59 5.80 3.85 </line>
<line>LYS CA 11.73 9.27 8.65 9.56 9.41 6.73 8.52 7.24 3.82 </line>
<line>GLU CA 10.61 7.69 8.31 9.04 9.47 6.41 6.41 3.82 </line>
<line>GLY CA 11.02 7.51 8.42 8.12 8.68 5.96 3.84 </line>
<line>ASP CA 11.82 7.94 7.35 5.40 5.40 3.83 </line>
<line>PRO CA 13.33 9.65 7.89 5.82 3.83 </line>
<line>ASN CA 13.37 9.88 7.06 3.77 </line>
<line>GLN CA 9.97 6.67 3.82 </line>
<line>LEU CA 6.49 3.80 </line>
<line>SER CA 3.88 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 316</line>
<line>ALA CA 233</line>
<line>LYS CA 209</line>
<line>GLU CA 195</line>
<line>GLY CA 175</line>
<line>ASP CA 202</line>
<line>PRO CA 208</line>
<line>ASN CA 253</line>
<line>GLN CA 326</line>
<line>LEU CA 397</line>
<line>SER CA 343</line>
<line>LYS CA 343</line>
</n14>
</entryChain>
<parallel>
<x>-33.9379997253418</x>
<y>32.534000396728516</y>
<z>27.55299949645996</z>
</parallel>
<rotation>
<x>-0.9860000014305115</x>
<y>0.16500000655651093</y>
<z>0.004000000189989805</z>
<x>0.04800000041723251</x>
<y>0.2630000114440918</y>
<z>0.9639999866485596</z>
<x>0.15800000727176666</x>
<y>0.9509999752044678</y>
<z>-0.2669999897480011</z>
</rotation>
<rmsd>2.5602951049804688</rmsd>
<dmax>3.7242579460144043</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>4ICB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>4ICBA</entryIDChain>
<sequence>LFEEL---DKNGD</sequence>
<secondary-structure>HHHHH--- </secondary-structure>
<atom-coordinate>
<line>ATOM 410 CA LEU A 49 16.296 8.010 14.345 1.00 16.40 C </line>
<line>ATOM 418 CA PHE A 50 19.255 10.173 13.123 1.00 16.58 C </line>
<line>ATOM 429 CA GLU A 51 21.747 7.590 14.428 1.00 21.44 C </line>
<line>ATOM 438 CA GLU A 52 19.909 4.821 12.639 1.00 19.18 C </line>
<line>ATOM 447 CA LEU A 53 19.691 6.604 9.289 1.00 14.68 C </line>
<line>ATOM 455 CA ASP A 54 23.315 7.751 9.417 1.00 15.01 C </line>
<line>ATOM 463 CA LYS A 55 24.929 4.424 8.493 1.00 21.73 C </line>
<line>ATOM 472 CA ASN A 56 28.424 5.705 7.705 1.00 21.79 C </line>
<line>ATOM 480 CA GLY A 57 28.546 7.774 10.884 1.00 21.18 C </line>
<line>ATOM 484 CA ASP A 58 29.582 10.999 9.140 1.00 18.29 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASN LYS ASP LEU GLU GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.58 12.73 14.02 11.03 8.58 6.25 5.11 5.47 3.86 </line>
<line>PHE CA 11.10 9.85 11.55 9.31 6.01 5.26 5.41 3.82 </line>
<line>GLU CA 10.05 7.67 9.66 7.44 5.25 5.62 3.77 </line>
<line>GLU CA 12.00 9.30 9.88 6.52 5.53 3.80 </line>
<line>LEU CA 10.82 9.07 8.92 5.73 3.80 </line>
<line>ASP CA 7.06 5.43 5.76 3.81 </line>
<line>LYS CA 8.08 5.48 3.80 </line>
<line>ASN CA 5.61 3.79 </line>
<line>GLY CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 320</line>
<line>PHE CA 338</line>
<line>GLU CA 247</line>
<line>GLU CA 262</line>
<line>LEU CA 322</line>
<line>ASP CA 268</line>
<line>LYS CA 202</line>
<line>ASN CA 158</line>
<line>GLY CA 171</line>
<line>ASP CA 181</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>VDEMIREADIDGD</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 915 CA VAL A 121 12.246 11.164 4.035 1.00 21.05 C </line>
<line>ATOM 922 CA ASP A 122 14.650 13.296 2.060 1.00 23.49 C </line>
<line>ATOM 930 CA GLU A 123 11.844 14.078 -0.444 1.00 25.69 C </line>
<line>ATOM 939 CA MET A 124 9.730 15.281 2.447 1.00 26.39 C </line>
<line>ATOM 947 CA ILE A 125 12.437 17.464 3.917 1.00 22.94 C </line>
<line>ATOM 955 CA ARG A 126 13.271 18.902 0.427 1.00 26.63 C </line>
<line>ATOM 966 CA GLU A 127 9.630 19.946 0.015 1.00 28.85 C </line>
<line>ATOM 975 CA ALA A 128 9.473 21.943 3.240 1.00 22.78 C </line>
<line>ATOM 980 CA ASP A 129 12.962 23.297 3.310 1.00 20.27 C </line>
<line>ATOM 988 CA ILE A 130 13.180 27.036 2.377 1.00 22.29 C </line>
<line>ATOM 996 CA ASP A 131 16.679 28.074 3.668 1.00 25.92 C </line>
<line>ATOM 1004 CA GLY A 132 18.351 24.972 2.108 1.00 28.52 C </line>
<line>ATOM 1008 CA ASP A 133 20.143 23.503 5.180 1.00 26.67 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASP ILE ASP ALA GLU ARG ILE MET GLU ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 14.69 15.22 17.49 15.99 12.18 11.16 10.01 8.60 6.30 5.08 5.36 3.77 </line>
<line>ASP CA 12.00 12.25 15.00 13.82 10.22 10.15 8.58 6.00 5.07 5.32 3.84 </line>
<line>GLU CA 13.76 12.94 15.37 13.33 10.02 9.00 6.29 5.11 5.55 3.78 </line>
<line>MET CA 13.55 12.98 14.61 12.25 8.69 6.71 5.26 5.45 3.78 </line>
<line>ILE CA 9.87 9.73 11.43 9.72 5.89 5.41 5.41 3.87 </line>
<line>ARG CA 9.54 8.09 10.31 8.36 5.27 5.62 3.81 </line>
<line>GLU CA 12.24 10.28 11.36 8.27 5.76 3.80 </line>
<line>ALA CA 10.96 9.45 9.47 6.36 3.74 </line>
<line>ASP CA 7.42 5.77 6.06 3.86 </line>
<line>ILE CA 8.30 5.57 3.87 </line>
<line>ASP CA 5.93 3.85 </line>
<line>GLY CA 3.85 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>VAL CA 261</line>
<line>ASP CA 235</line>
<line>GLU CA 202</line>
<line>MET CA 297</line>
<line>ILE CA 326</line>
<line>ARG CA 237</line>
<line>GLU CA 238</line>
<line>ALA CA 278</line>
<line>ASP CA 257</line>
<line>ILE CA 197</line>
<line>ASP CA 159</line>
<line>GLY CA 170</line>
<line>ASP CA 179</line>
</n14>
</entryChain>
<parallel>
<x>8.729999542236328</x>
<y>-11.826000213623047</y>
<z>8.508999824523926</z>
</parallel>
<rotation>
<x>0.3659999966621399</x>
<y>0.9150000214576721</y>
<z>-0.16899999976158142</z>
<x>0.7570000290870667</x>
<y>-0.39800000190734863</y>
<z>-0.5180000066757202</z>
<x>-0.5419999957084656</x>
<y>0.061000000685453415</y>
<z>-0.8379999995231628</z>
</rotation>
<rmsd>2.649986982345581</rmsd>
<dmax>3.6595699787139893</dmax>
</indel>