NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CLPA-1Y6PA
confEVID 1CLPA-1Y6PA
pdbIDA 1CLP
pdbIDB 1Y6P
pdbChainA A
pdbChainB A
identity 0.323300004005432
indelSize 2
alignment <alignment>
<seq1>SLFELGKMILQET-GKNPAKSYGAYGCNCGVLGRGKPKDATDRCCYVHKCC---YKKLTG-----CNPKKDRYSYSWKDKTIVCGENN-SCLKELCECDKAVAICLRENLNTYNKKYRYYLKPLC--KKADAC</seq1>
<seq2>ALWQFRSLIKCAIPGSHPLLDFNNYGCYCGLGGSGTPVDELDRCCETHDCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKA--PYNKEHKNLDTKKYCKGESDKC</seq2>
<ss_1> HHHHHHHHH - HHHHHHHHHHHH---GGG ----- EEEEE EEE - HHHHHHHHHHHHHHHH -- </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHHHHHGGG HHHHH HHHH EEEEE EEEEE HHHHHHHHHHHHHHHHHHH -- GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CLP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLPA</entryIDChain>
<sequence>CGENN-SCLKE</sequence>
<secondary-structure> - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 580 CA CYS A 84 29.815 11.955 -44.122 1.00 12.10 C </line>
<line>ATOM 586 CA GLY A 86 27.969 9.458 -46.259 1.00 24.02 C </line>
<line>ATOM 590 CA GLU A 87 24.661 11.023 -47.213 1.00 28.41 C </line>
<line>ATOM 599 CA ASN A 88 24.455 10.975 -51.015 1.00 35.44 C </line>
<line>ATOM 607 CA ASN A 89 21.585 13.475 -50.652 1.00 24.39 C </line>
<line>ATOM 615 CA SER A 90 23.266 16.378 -52.416 1.00 14.08 C </line>
<line>ATOM 621 CA CYS A 91 21.952 18.666 -49.715 1.00 11.03 C </line>
<line>ATOM 627 CA LEU A 92 22.083 16.561 -46.629 1.00 8.07 C </line>
<line>ATOM 635 CA LYS A 93 25.618 15.617 -47.662 1.00 6.76 C </line>
<line>ATOM 644 CA GLU A 94 26.757 19.084 -48.538 1.00 7.35 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS LEU CYS SER ASN ASN GLU GLY CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 8.93 6.60 9.34 11.75 11.46 10.62 8.79 6.08 3.77 </line>
<line>GLY CA 9.97 6.74 9.23 11.53 10.39 8.73 6.10 3.78 </line>
<line>GLU CA 8.43 4.71 6.14 8.49 7.60 5.23 3.81 </line>
<line>ASN CA 8.79 5.84 7.49 8.19 5.71 3.82 </line>
<line>ASN CA 7.92 5.46 5.09 5.29 3.79 </line>
<line>SER CA 5.88 5.36 5.91 3.78 </line>
<line>CYS CA 4.96 5.19 3.74 </line>
<line>LEU CA 5.64 3.80 </line>
<line>LYS CA 3.75 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>CYS CA 298</line>
<line>GLY CA 213</line>
<line>GLU CA 224</line>
<line>ASN CA 158</line>
<line>ASN CA 187</line>
<line>SER CA 195</line>
<line>CYS CA 252</line>
<line>LEU CA 302</line>
<line>LYS CA 289</line>
<line>GLU CA 301</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1Y6PA</entryIDChain>
<sequence>CNSKNNACEAF</sequence>
<secondary-structure>EE HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 648 CA CYS A 84 27.343 28.016 -16.347 1.00 18.00 C </line>
<line>ATOM 654 CA ASN A 85 28.712 25.889 -13.500 1.00 17.58 C </line>
<line>ATOM 662 CA SER A 86 31.189 23.370 -14.897 1.00 18.24 C </line>
<line>ATOM 668 CA LYS A 87 29.649 20.850 -12.488 1.00 15.24 C </line>
<line>ATOM 677 CA ASN A 88 26.350 20.691 -14.428 1.00 12.20 C </line>
<line>ATOM 685 CA ASN A 89 26.028 17.386 -16.259 1.00 9.63 C </line>
<line>ATOM 693 CA ALA A 90 26.597 17.438 -20.012 1.00 11.84 C </line>
<line>ATOM 698 CA CYS A 91 22.881 17.822 -20.767 1.00 11.77 C </line>
<line>ATOM 704 CA GLU A 92 22.346 20.549 -18.169 1.00 10.82 C </line>
<line>ATOM 713 CA ALA A 93 25.521 22.255 -19.390 1.00 9.43 C </line>
<line>ATOM 718 CA PHE A 94 24.265 22.343 -22.961 1.00 9.85 C </line>
</atom-coordinate>
<distance-map>
<line> PHE ALA GLU CYS ALA ASN ASN LYS SER ASN CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 9.24 6.77 9.17 11.97 11.22 10.71 7.64 8.46 6.20 3.81 </line>
<line>ASN CA 11.04 7.62 9.53 12.32 10.88 9.33 5.78 5.22 3.80 </line>
<line>SER CA 10.68 7.32 9.84 11.59 9.08 8.02 5.55 3.81 </line>
<line>LYS CA 11.87 8.16 9.26 11.11 8.81 6.27 3.83 </line>
<line>ASN CA 8.94 5.27 5.48 7.77 6.47 3.79 </line>
<line>ASN CA 8.52 5.81 5.22 5.52 3.80 </line>
<line>ALA CA 6.18 4.97 5.58 3.81 </line>
<line>CYS CA 5.21 5.34 3.80 </line>
<line>GLU CA 5.46 3.81 </line>
<line>ALA CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>CYS CA 302</line>
<line>ASN CA 224</line>
<line>SER CA 171</line>
<line>LYS CA 154</line>
<line>ASN CA 226</line>
<line>ASN CA 230</line>
<line>ALA CA 255</line>
<line>CYS CA 315</line>
<line>GLU CA 354</line>
<line>ALA CA 332</line>
<line>PHE CA 368</line>
</n14>
</entryChain>
<parallel>
<x>-2.4100000858306885</x>
<y>-8.267000198364258</y>
<z>-32.176998138427734</z>
</parallel>
<rotation>
<x>0.621999979019165</x>
<y>-0.46799999475479126</y>
<z>-0.628000020980835</z>
<x>0.6290000081062317</x>
<y>-0.17900000512599945</y>
<z>0.7559999823570251</z>
<x>-0.4659999907016754</x>
<y>-0.8659999966621399</y>
<z>0.18299999833106995</z>
</rotation>
<rmsd>2.0407419204711914</rmsd>
<dmax>3.920137882232666</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1Y6PA</entryIDChain>
<sequence>CFSKA--PYNKE</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 802 CA CYS A 105 22.293 37.723 -28.247 1.00 16.01 C </line>
<line>ATOM 808 CA PHE A 106 19.383 39.667 -26.747 1.00 17.23 C </line>
<line>ATOM 819 CA SER A 107 21.731 42.167 -25.116 1.00 21.09 C </line>
<line>ATOM 825 CA LYS A 108 23.354 42.867 -28.487 1.00 23.79 C </line>
<line>ATOM 834 CA ALA A 109 20.190 43.065 -30.572 1.00 26.47 C </line>
<line>ATOM 839 CA PRO A 110 18.304 46.378 -31.007 1.00 27.86 C </line>
<line>ATOM 846 CA TYR A 111 14.934 46.446 -29.278 1.00 27.43 C </line>
<line>ATOM 858 CA ASN A 112 11.998 47.349 -31.498 1.00 30.36 C </line>
<line>ATOM 866 CA LYS A 113 8.929 47.967 -29.324 1.00 33.89 C </line>
<line>ATOM 875 CA GLU A 114 6.498 47.764 -32.252 1.00 35.27 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS ASN TYR PRO ALA LYS SER PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.14 16.87 14.46 11.46 9.92 6.19 5.26 5.47 3.81 </line>
<line>PHE CA 16.18 13.59 11.67 8.49 8.02 5.18 5.39 3.80 </line>
<line>SER CA 17.73 14.67 12.74 9.05 8.01 5.74 3.81 </line>
<line>LYS CA 17.95 15.32 12.57 9.18 6.65 3.79 </line>
<line>ALA CA 14.57 12.34 9.29 6.38 3.84 </line>
<line>PRO CA 11.95 9.66 6.40 3.79 </line>
<line>TYR CA 9.04 6.19 3.79 </line>
<line>ASN CA 5.57 3.81 </line>
<line>LYS CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>CYS CA 339</line>
<line>PHE CA 401</line>
<line>SER CA 320</line>
<line>LYS CA 243</line>
<line>ALA CA 271</line>
<line>PRO CA 235</line>
<line>TYR CA 287</line>
<line>ASN CA 243</line>
<line>LYS CA 223</line>
<line>GLU CA 205</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLPA</entryIDChain>
<sequence>CLRENLNTYNKK</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 724 CA CYS A 105 37.728 24.783 -37.128 1.00 5.35 C </line>
<line>ATOM 730 CA LEU A 106 36.148 25.144 -33.733 1.00 5.21 C </line>
<line>ATOM 738 CA ARG A 107 38.433 22.443 -32.408 1.00 3.58 C </line>
<line>ATOM 749 CA GLU A 108 41.235 23.811 -34.466 1.00 4.31 C </line>
<line>ATOM 758 CA ASN A 109 41.201 27.272 -32.941 1.00 2.01 C </line>
<line>ATOM 766 CA LEU A 110 40.580 26.055 -29.454 1.00 2.01 C </line>
<line>ATOM 774 CA ASN A 111 43.805 27.613 -28.305 1.00 9.02 C </line>
<line>ATOM 782 CA THR A 112 42.910 31.221 -29.140 1.00 15.11 C </line>
<line>ATOM 789 CA TYR A 113 39.478 30.470 -27.645 1.00 18.86 C </line>
<line>ATOM 801 CA ASN A 114 38.744 33.162 -25.152 1.00 15.16 C </line>
<line>ATOM 809 CA LYS A 115 36.015 32.758 -22.631 1.00 17.68 C </line>
<line>ATOM 818 CA LYS A 116 35.326 36.390 -21.935 1.00 14.78 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS ASN TYR THR ASN LEU ASN GLU ARG LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.27 16.63 14.65 11.20 11.49 11.08 8.29 5.98 4.51 5.32 3.76 </line>
<line>LEU CA 16.32 13.46 12.03 8.75 10.19 9.71 6.23 5.54 5.31 3.78 </line>
<line>ARG CA 17.72 14.42 12.95 9.39 10.38 8.51 5.14 5.59 3.74 </line>
<line>GLU CA 18.71 15.73 13.43 9.69 9.28 7.68 5.53 3.78 </line>
<line>ASN CA 15.45 12.78 10.07 6.42 5.74 5.33 3.75 </line>
<line>LEU CA 13.82 10.60 8.51 4.90 5.68 3.76 </line>
<line>ASN CA 13.77 10.92 8.15 5.23 3.81 </line>
<line>THR CA 11.67 9.61 6.08 3.82 </line>
<line>TYR CA 9.21 6.51 3.74 </line>
<line>ASN CA 5.70 3.74 </line>
<line>LYS CA 3.76 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 347</line>
<line>LEU CA 410</line>
<line>ARG CA 334</line>
<line>GLU CA 259</line>
<line>ASN CA 265</line>
<line>LEU CA 282</line>
<line>ASN CA 195</line>
<line>THR CA 223</line>
<line>TYR CA 314</line>
<line>ASN CA 264</line>
<line>LYS CA 257</line>
<line>LYS CA 219</line>
</n14>
</entryChain>
<parallel>
<x>-20.461000442504883</x>
<y>15.918999671936035</y>
<z>2.7079999446868896</z>
</parallel>
<rotation>
<x>0.6069999933242798</x>
<y>0.6620000004768372</y>
<z>-0.4410000145435333</z>
<x>-0.5920000076293945</x>
<y>0.006000000052154064</y>
<z>-0.8059999942779541</z>
<x>-0.5299999713897705</x>
<y>0.75</y>
<z>0.3959999978542328</z>
</rotation>
<rmsd>0.9373900294303894</rmsd>
<dmax>2.015191078186035</dmax>
</indel>