NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CLPB-1Y6PB
confEVID 1CLPB-1Y6PB
pdbIDA 1CLP
pdbIDB 1Y6P
pdbChainA B
pdbChainB B
identity 0.308299988508224
indelSize 2
alignment <alignment>
<seq1>SLFELGKMILQETG-KNPAKSYGAYGCNCGVLGRGKPKDATDRCCYVHKCCYKKLTGC--------NPKKDRYSYSWKDKTIVCGEN-NSCLKELCECDKAVAICLRENLNTYNKKYRYYLKPL--CKKADAC</seq1>
<seq2>ALWQFRSLIKCAIPGSHPLLDFNNYGCYCGLGGSGTPVDELDRCCETHDCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKA--PYNKEHKNLDTKKYCKGESDKC</seq2>
<ss_1> HHHHHHHHH - GGG HHHHHHHHHHHHHHH -------- EEEEE EEE - HHHHHHHHHHHHHHHHHHHGGG GGG -- </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHHHHHHHH GGG EEE EEEEE HHHHHHHHHHHHHHHHHH -- GGG HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CLP</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CLPB</entryIDChain>
<sequence>VCGEN-NSCLK</sequence>
<secondary-structure>E - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1519 CA VAL B 83 46.419 13.407 -22.637 1.00 2.01 C </line>
<line>ATOM 1526 CA CYS B 84 46.977 12.465 -19.003 1.00 6.32 C </line>
<line>ATOM 1532 CA GLY B 86 48.266 14.784 -16.374 1.00 16.16 C </line>
<line>ATOM 1536 CA GLU B 87 47.579 13.755 -12.795 1.00 29.22 C </line>
<line>ATOM 1545 CA ASN B 88 51.327 13.288 -12.098 1.00 31.40 C </line>
<line>ATOM 1553 CA ASN B 89 50.222 11.235 -9.134 1.00 24.78 C </line>
<line>ATOM 1561 CA SER B 90 52.505 8.391 -10.117 1.00 22.83 C </line>
<line>ATOM 1567 CA CYS B 91 49.711 5.935 -9.608 1.00 23.64 C </line>
<line>ATOM 1573 CA LEU B 92 46.910 8.055 -10.967 1.00 21.37 C </line>
<line>ATOM 1581 CA LYS B 93 49.176 9.094 -13.882 1.00 16.11 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LEU CYS SER ASN ASN GLU GLY CYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.14 12.85 15.38 14.80 14.20 11.63 9.92 6.67 3.80 </line>
<line>CYS CA 6.51 9.17 11.76 11.23 10.46 8.20 6.37 3.74 </line>
<line>GLY CA 6.28 8.74 11.23 9.90 8.30 5.47 3.79 </line>
<line>GLU CA 5.05 6.02 8.71 7.76 5.17 3.84 </line>
<line>ASN CA 5.04 6.94 7.93 5.41 3.77 </line>
<line>ASN CA 5.31 4.94 5.35 3.78 </line>
<line>SER CA 5.07 5.67 3.75 </line>
<line>CYS CA 5.34 3.77 </line>
<line>LEU CA 3.84 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 264</line>
<line>CYS CA 293</line>
<line>GLY CA 219</line>
<line>GLU CA 227</line>
<line>ASN CA 173</line>
<line>ASN CA 190</line>
<line>SER CA 198</line>
<line>CYS CA 251</line>
<line>LEU CA 307</line>
<line>LYS CA 289</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1Y6PB</entryIDChain>
<sequence>TCNSKNNACEA</sequence>
<secondary-structure>EEE HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1662 CA THR B 83 15.458 25.783 0.955 1.00 22.96 C </line>
<line>ATOM 1669 CA CYS B 84 14.921 23.466 -2.028 1.00 21.96 C </line>
<line>ATOM 1675 CA ASN B 85 13.474 25.791 -4.660 1.00 25.14 C </line>
<line>ATOM 1683 CA SER B 86 9.880 24.810 -5.398 1.00 26.68 C </line>
<line>ATOM 1689 CA LYS B 87 10.635 25.361 -9.094 1.00 26.92 C </line>
<line>ATOM 1698 CA ASN B 88 12.711 22.163 -9.208 1.00 25.20 C </line>
<line>ATOM 1706 CA ASN B 89 11.180 19.323 -11.204 1.00 22.95 C </line>
<line>ATOM 1714 CA ALA B 90 9.785 16.265 -9.395 1.00 18.06 C </line>
<line>ATOM 1719 CA CYS B 91 13.098 14.411 -9.614 1.00 17.27 C </line>
<line>ATOM 1725 CA GLU B 92 15.229 17.434 -8.707 1.00 15.73 C </line>
<line>ATOM 1734 CA ALA B 93 13.135 18.209 -5.620 1.00 14.60 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU CYS ALA ASN ASN LYS SER ASN CYS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.30 12.77 15.70 15.16 14.42 11.13 11.15 8.51 5.96 3.82 </line>
<line>CYS CA 6.61 9.00 11.95 11.51 10.74 7.62 8.48 6.21 3.80 </line>
<line>ASN CA 7.65 9.45 12.42 11.26 9.48 5.87 5.28 3.80 </line>
<line>SER CA 7.36 9.69 11.67 9.43 8.09 5.43 3.81 </line>
<line>LYS CA 8.33 9.17 11.24 9.14 6.42 3.81 </line>
<line>ASN CA 5.36 5.38 7.77 6.59 3.79 </line>
<line>ASN CA 6.02 5.12 5.51 3.82 </line>
<line>ALA CA 5.41 5.61 3.80 </line>
<line>CYS CA 5.51 3.81 </line>
<line>GLU CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>THR CA 276</line>
<line>CYS CA 308</line>
<line>ASN CA 223</line>
<line>SER CA 175</line>
<line>LYS CA 150</line>
<line>ASN CA 216</line>
<line>ASN CA 200</line>
<line>ALA CA 227</line>
<line>CYS CA 315</line>
<line>GLU CA 350</line>
<line>ALA CA 319</line>
</n14>
</entryChain>
<parallel>
<x>36.821998596191406</x>
<y>-10.244000434875488</y>
<z>-7.665999889373779</z>
</parallel>
<rotation>
<x>-0.9539999961853027</x>
<y>-0.27799999713897705</y>
<z>-0.10999999940395355</z>
<x>-0.25699999928474426</x>
<y>0.9509999752044678</y>
<z>-0.17399999499320984</z>
<x>0.15299999713897705</x>
<y>-0.13699999451637268</y>
<z>-0.9789999723434448</z>
</rotation>
<rmsd>2.0379879474639893</rmsd>
<dmax>4.164109230041504</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1Y6PB</entryIDChain>
<sequence>CFSKA--PYNKE</sequence>
<secondary-structure>HHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1823 CA CYS B 105 19.570 15.142 10.373 1.00 12.36 C </line>
<line>ATOM 1829 CA PHE B 106 23.365 15.590 10.612 1.00 11.60 C </line>
<line>ATOM 1840 CA SER B 107 23.213 18.971 12.324 1.00 9.61 C </line>
<line>ATOM 1846 CA LYS B 108 21.466 17.673 15.452 1.00 10.65 C </line>
<line>ATOM 1855 CA ALA B 109 22.860 14.142 15.587 1.00 13.12 C </line>
<line>ATOM 1860 CA PRO B 110 25.614 13.564 18.143 1.00 15.61 C </line>
<line>ATOM 1867 CA TYR B 111 29.023 13.064 16.524 1.00 16.09 C </line>
<line>ATOM 1879 CA ASN B 112 30.497 10.068 18.388 1.00 16.44 C </line>
<line>ATOM 1887 CA LYS B 113 34.278 9.980 17.938 1.00 16.87 C </line>
<line>ATOM 1896 CA GLU B 114 34.413 6.217 18.532 1.00 18.76 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS ASN TYR PRO ALA LYS SER PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.15 17.33 14.47 11.47 9.97 6.25 5.98 5.63 3.83 </line>
<line>PHE CA 16.51 14.29 11.91 8.56 8.12 5.21 5.60 3.79 </line>
<line>SER CA 18.07 15.32 13.00 9.29 8.30 5.84 3.81 </line>
<line>LYS CA 17.56 15.15 12.17 8.92 6.43 3.80 </line>
<line>ALA CA 14.32 12.38 9.10 6.33 3.80 </line>
<line>PRO CA 11.47 9.38 6.01 3.81 </line>
<line>TYR CA 8.94 6.26 3.82 </line>
<line>ASN CA 5.49 3.81 </line>
<line>LYS CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>CYS CA 337</line>
<line>PHE CA 394</line>
<line>SER CA 321</line>
<line>LYS CA 230</line>
<line>ALA CA 270</line>
<line>PRO CA 233</line>
<line>TYR CA 294</line>
<line>ASN CA 236</line>
<line>LYS CA 190</line>
<line>GLU CA 201</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLP</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1CLPB</entryIDChain>
<sequence>CLRENLNTYNKK</sequence>
<secondary-structure>HHHHHGGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1670 CA CYS B 105 43.209 -0.961 -28.540 1.00 5.01 C </line>
<line>ATOM 1676 CA LEU B 106 39.400 -0.977 -28.579 1.00 5.12 C </line>
<line>ATOM 1684 CA ARG B 107 38.650 1.442 -31.420 1.00 8.04 C </line>
<line>ATOM 1695 CA GLU B 108 41.799 0.274 -33.098 1.00 5.88 C </line>
<line>ATOM 1704 CA ASN B 109 40.210 -3.153 -33.229 1.00 6.40 C </line>
<line>ATOM 1712 CA LEU B 110 36.761 -1.647 -33.521 1.00 11.92 C </line>
<line>ATOM 1720 CA ASN B 111 36.728 -2.971 -37.035 1.00 17.00 C </line>
<line>ATOM 1728 CA THR B 112 36.647 -6.667 -36.303 1.00 13.51 C </line>
<line>ATOM 1735 CA TYR B 113 34.647 -6.533 -33.112 1.00 13.62 C </line>
<line>ATOM 1747 CA ASN B 114 32.065 -9.236 -33.427 1.00 15.77 C </line>
<line>ATOM 1755 CA LYS B 115 28.781 -8.656 -31.685 1.00 18.50 C </line>
<line>ATOM 1764 CA LYS B 116 28.804 -12.447 -31.021 1.00 21.73 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS ASN TYR THR ASN LEU ASN GLU ARG LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.59 16.65 14.72 11.19 11.66 10.87 8.18 5.98 4.93 5.90 3.81 </line>
<line>LEU CA 15.81 13.47 12.06 8.60 9.98 9.09 5.64 5.20 5.27 3.81 </line>
<line>ARG CA 17.03 14.12 12.70 9.08 9.68 7.40 4.19 5.18 3.75 </line>
<line>GLU CA 18.30 15.85 13.61 9.87 9.22 7.19 5.41 3.78 </line>
<line>ASN CA 14.88 12.78 10.17 6.51 5.87 5.16 3.77 </line>
<line>LEU CA 13.65 10.78 8.92 5.34 5.74 3.76 </line>
<line>ASN CA 13.74 11.14 8.60 5.69 3.77 </line>
<line>THR CA 11.08 9.34 5.99 3.77 </line>
<line>TYR CA 8.57 6.40 3.75 </line>
<line>ASN CA 5.17 3.76 </line>
<line>LYS CA 3.85 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 358</line>
<line>LEU CA 404</line>
<line>ARG CA 326</line>
<line>GLU CA 255</line>
<line>ASN CA 277</line>
<line>LEU CA 298</line>
<line>ASN CA 203</line>
<line>THR CA 223</line>
<line>TYR CA 315</line>
<line>ASN CA 256</line>
<line>LYS CA 251</line>
<line>LYS CA 223</line>
</n14>
</entryChain>
<parallel>
<x>-13.876999855041504</x>
<y>18.003000259399414</y>
<z>46.888999938964844</z>
</parallel>
<rotation>
<x>-0.9909999966621399</x>
<y>-0.1340000033378601</y>
<z>-0.026000000536441803</z>
<x>-0.11999999731779099</x>
<y>0.9449999928474426</y>
<z>-0.30399999022483826</z>
<x>0.06499999761581421</x>
<y>-0.2980000078678131</y>
<z>-0.9520000219345093</z>
</rotation>
<rmsd>0.9922810196876526</rmsd>
<dmax>1.7531349658966064</dmax>
</indel>