NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CMWA-5KTQA
confEVID 1CMWA-5KTQA
pdbIDA 1CMW
pdbIDB 5KTQ
pdbChainA A
pdbChainB A
identity 0.759400010108948
indelSize 2
alignment <alignment>
<seq1>PKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVALEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA---------------VLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE</seq1>
<seq2>------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPKALE---------------------------------------------------------------------------------------EAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV--AEEIAR------------LEAEVFRLAGHPFNL-----NSRDQLERVLFDELGLPAISTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE</seq2>
<ss_1> EEEEEE HHHHHHH HHHHHHHHHHHHHHHH EEEEE GGGG HHHH HHHHHHHHHHHHHH EEE HHHHHHHHHHHHHH EEEEEE GGGGG EEE EEE HHHH HHHHH GGGGG HHHH GGGGG HHHHHHHHHH GGG EEE EEEEEE EE HHHH HHHHHHHHHH HHHHHH HHHHHHH HHHHHHHHHHHHHHHHHHH HHHHHHIIIIHHHHHHHHHHHHHH EEHHHHHHHHHHH HHHHH HHHHHHHHHH HHHH --------------- HHHH HHHHHHHHHHHH EEE EEE GGG HHHHHHGGG EEEEEEEEE HHHHHHHHH HHHHHHHH HHHHHHHHH HHHHHHHHHHH HHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH EEEEEEEEEEE HHHHHHHHHHHHH EEEEEEEEEHHHH </ss_1>
<ss_2>------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ --------------------------------------------------------------------------------------- EEEEE EEEEEE EEE HHHHHHHHHH HHHHHH HHHHHHHH HHHHHHHHHHHHHHHHHHHH HHHHHHIIIIHHHHHHHHHHHHHH EEEHHHHHHHHHHH--HHHHHH------------HHHHHHGGG ----- HHHHHIIIIII GGGGG HHHHHHHHHHHH HHHH EEE GGG HHHGGGEEE EEEEEEEEE HHHHHHHHH HHHHHHHH HHHHHHHHH HHHHHHHHHHHHH HHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHEEE EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEEEEEEEEEE HHHHHHHHHHHHH EEEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>5KTQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5KTQA</entryIDChain>
<sequence>LSLEV--AEEIA</sequence>
<secondary-structure>HHHHH--HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1320 CA LEU A 459 67.577 39.457 21.794 1.00 25.50 C </line>
<line>ATOM 1328 CA SER A 460 68.077 40.614 18.207 1.00 25.75 C </line>
<line>ATOM 1334 CA LEU A 461 71.685 39.384 18.440 1.00 28.51 C </line>
<line>ATOM 1342 CA GLU A 462 70.565 36.115 20.046 1.00 29.34 C </line>
<line>ATOM 1351 CA VAL A 463 68.004 35.336 17.368 1.00 29.75 C </line>
<line>ATOM 1358 CA ALA A 464 70.394 36.504 14.604 1.00 27.34 C </line>
<line>ATOM 1363 CA GLU A 465 72.840 33.881 15.956 1.00 25.85 C </line>
<line>ATOM 1372 CA GLU A 466 70.330 31.065 15.672 1.00 27.76 C </line>
<line>ATOM 1381 CA ILE A 467 69.485 32.401 12.232 1.00 27.11 C </line>
<line>ATOM 1389 CA ALA A 468 73.194 31.936 11.317 1.00 25.72 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE GLU GLU ALA VAL GLU LEU SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.07 12.04 10.75 9.64 8.27 6.06 4.81 5.30 3.80 </line>
<line>SER CA 12.21 10.25 10.13 8.55 5.94 5.34 5.46 3.82 </line>
<line>LEU CA 10.42 9.60 8.87 6.15 4.97 5.58 3.81 </line>
<line>GLU CA 10.03 8.72 6.69 5.19 5.46 3.79 </line>
<line>VAL CA 8.67 6.10 5.15 5.24 3.84 </line>
<line>ALA CA 6.29 4.83 5.54 3.83 </line>
<line>GLU CA 5.04 5.23 3.78 </line>
<line>GLU CA 5.28 3.79 </line>
<line>ILE CA 3.85 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LEU CA 317</line>
<line>SER CA 304</line>
<line>LEU CA 230</line>
<line>GLU CA 246</line>
<line>VAL CA 314</line>
<line>ALA CA 266</line>
<line>GLU CA 215</line>
<line>GLU CA 268</line>
<line>ILE CA 306</line>
<line>ALA CA 267</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CMW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CMWA</entryIDChain>
<sequence>LSLEVALEAEVF</sequence>
<secondary-structure>HHHHH HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4332 CA LEU A 459 176.582 146.834 53.764 1.00 38.71 C </line>
<line>ATOM 4341 CA SER A 460 173.515 148.423 52.156 1.00 43.23 C </line>
<line>ATOM 4349 CA LEU A 461 175.056 148.332 48.668 1.00 46.99 C </line>
<line>ATOM 4358 CA GLU A 462 176.335 144.777 49.201 1.00 40.58 C </line>
<line>ATOM 4368 CA VAL A 463 172.904 143.451 50.193 1.00 36.68 C </line>
<line>ATOM 4376 CA ALA A 464 171.261 145.462 47.395 1.00 48.88 C </line>
<line>ATOM 4382 CA LEU A 470 167.482 136.902 43.536 1.00 46.09 C </line>
<line>ATOM 4391 CA GLU A 471 165.070 139.186 41.670 1.00 47.57 C </line>
<line>ATOM 4401 CA ALA A 472 166.969 138.645 38.409 1.00 48.20 C </line>
<line>ATOM 4407 CA GLU A 473 166.748 134.869 38.895 1.00 52.60 C </line>
<line>ATOM 4417 CA VAL A 474 162.957 135.032 39.242 1.00 49.86 C </line>
<line>ATOM 4425 CA PHE A 475 162.862 136.991 35.970 1.00 52.47 C </line>
</atom-coordinate>
<distance-map>
<line> PHE VAL GLU ALA GLU LEU ALA VAL GLU LEU SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 24.53 23.15 21.47 19.88 18.37 16.91 8.41 6.14 5.01 5.53 3.81 </line>
<line>SER CA 22.50 21.39 20.13 18.10 16.33 15.60 6.04 5.38 5.48 3.81 </line>
<line>LEU CA 20.94 20.30 18.60 16.26 15.24 14.64 4.93 5.55 3.82 </line>
<line>GLU CA 20.43 19.32 17.21 15.55 14.66 13.13 5.43 3.81 </line>
<line>VAL CA 18.57 17.02 15.47 14.04 12.34 10.80 3.82 </line>
<line>ALA CA 16.52 15.63 14.31 12.07 10.51 10.12 </line>
<line>LEU CA 8.87 6.51 5.12 5.44 3.81 </line>
<line>GLU CA 6.49 5.26 5.40 3.81 </line>
<line>ALA CA 5.05 5.46 3.81 </line>
<line>GLU CA 5.31 3.81 </line>
<line>VAL CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LEU CA 334</line>
<line>SER CA 323</line>
<line>LEU CA 215</line>
<line>GLU CA 238</line>
<line>VAL CA 319</line>
<line>ALA CA 264</line>
<line>LEU CA 324</line>
<line>GLU CA 334</line>
<line>ALA CA 257</line>
<line>GLU CA 259</line>
<line>VAL CA 359</line>
<line>PHE CA 295</line>
</n14>
</entryChain>
<parallel>
<x>-101.71299743652344</x>
<y>-106.5199966430664</y>
<z>-28.858999252319336</z>
</parallel>
<rotation>
<x>0.2029999941587448</x>
<y>-0.04899999871850014</y>
<z>0.9779999852180481</z>
<x>0.37400001287460327</x>
<y>0.9269999861717224</y>
<z>-0.03099999949336052</z>
<x>-0.9049999713897705</x>
<y>0.3720000088214874</y>
<z>0.2070000022649765</z>
</rotation>
<rmsd>5.1150689125061035</rmsd>
<dmax>6.732855796813965</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>5KTQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5KTQA</entryIDChain>
<sequence>HPFNL-----NSRDQ</sequence>
<secondary-structure> ----- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1482 CA HIS A 480 77.395 24.421 -1.249 1.00 34.75 C </line>
<line>ATOM 1492 CA PRO A 481 76.279 27.900 -0.005 1.00 28.38 C </line>
<line>ATOM 1499 CA PHE A 482 73.460 29.680 -1.810 1.00 26.84 C </line>
<line>ATOM 1510 CA ASN A 483 70.910 32.455 -1.122 1.00 29.08 C </line>
<line>ATOM 1518 CA LEU A 484 67.994 31.131 1.059 1.00 29.40 C </line>
<line>ATOM 1526 CA ASN A 485 65.927 34.122 -0.048 1.00 31.98 C </line>
<line>ATOM 1534 CA SER A 486 66.401 33.988 -3.804 1.00 33.52 C </line>
<line>ATOM 1540 CA ARG A 487 63.665 31.979 -5.495 1.00 37.47 C </line>
<line>ATOM 1551 CA ASP A 488 66.004 31.076 -8.394 1.00 37.23 C </line>
<line>ATOM 1559 CA GLN A 489 68.373 29.414 -6.009 1.00 34.65 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ASP ARG SER ASN LEU ASN PHE PRO HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.36 15.00 16.24 14.80 15.07 11.78 10.33 6.59 3.86 </line>
<line>PRO CA 10.04 13.64 14.35 12.21 12.08 8.96 7.13 3.79 </line>
<line>PHE CA 6.60 10.04 10.71 8.51 8.92 6.34 3.83 </line>
<line>ASN CA 6.29 8.88 8.48 5.47 5.36 3.87 </line>
<line>LEU CA 7.28 9.66 7.90 5.86 3.80 </line>
<line>ASN CA 7.98 8.88 6.28 3.79 </line>
<line>SER CA 5.45 5.45 3.79 </line>
<line>ARG CA 5.39 3.83 </line>
<line>ASP CA 3.75 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>HIS CA 194</line>
<line>PRO CA 232</line>
<line>PHE CA 259</line>
<line>ASN CA 252</line>
<line>LEU CA 346</line>
<line>ASN CA 261</line>
<line>SER CA 205</line>
<line>ARG CA 217</line>
<line>ASP CA 189</line>
<line>GLN CA 246</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CMW</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CMWA</entryIDChain>
<sequence>GLPAIGKTEKTGKRS</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4676 CA GLY A 499 150.755 124.049 40.724 1.00 79.17 C </line>
<line>ATOM 4681 CA LEU A 500 148.590 125.393 43.552 1.00 82.82 C </line>
<line>ATOM 4690 CA PRO A 501 147.171 123.203 46.372 1.00 84.00 C </line>
<line>ATOM 4697 CA ALA A 502 145.829 123.909 49.876 1.00 83.82 C </line>
<line>ATOM 4703 CA ILE A 503 147.712 125.501 52.782 1.00 84.00 C </line>
<line>ATOM 4712 CA GLY A 504 146.423 124.011 56.027 1.00 84.00 C </line>
<line>ATOM 4717 CA LYS A 505 144.222 125.490 58.753 1.00 84.00 C </line>
<line>ATOM 4730 CA THR A 506 145.905 128.614 60.144 1.00 83.95 C </line>
<line>ATOM 4739 CA GLU A 507 145.018 131.597 57.920 1.00 82.87 C </line>
<line>ATOM 4749 CA LYS A 508 142.698 130.952 54.964 1.00 84.00 C </line>
<line>ATOM 4762 CA THR A 509 141.107 132.565 51.864 1.00 84.00 C </line>
<line>ATOM 4771 CA GLY A 510 141.845 136.259 52.487 1.00 84.00 C </line>
<line>ATOM 4776 CA LYS A 511 144.614 138.116 50.650 1.00 84.00 C </line>
<line>ATOM 4789 CA ARG A 512 146.300 138.795 53.999 1.00 83.82 C </line>
<line>ATOM 4806 CA SER A 513 146.227 135.116 54.995 1.00 82.56 C </line>
</atom-coordinate>
<distance-map>
<line> SER ARG LYS GLY THR LYS GLU THR LYS GLY ILE ALA PRO LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 18.62 20.34 18.28 19.15 17.02 17.76 19.64 20.53 19.23 15.90 12.52 10.39 6.74 3.81 </line>
<line>LEU CA 15.20 17.15 15.10 15.60 13.29 13.99 16.05 17.11 15.82 12.74 9.27 7.06 3.84 </line>
<line>PRO CA 14.74 17.38 15.72 15.37 12.43 12.40 14.44 14.85 12.93 9.72 6.83 3.82 </line>
<line>ALA CA 12.33 15.45 14.28 13.24 10.06 9.24 11.16 11.29 9.16 6.18 3.81 </line>
<line>ILE CA 9.98 13.42 13.16 12.26 9.71 7.72 8.42 8.19 6.92 3.80 </line>
<line>GLY CA 11.15 14.92 15.20 13.55 10.90 7.95 7.94 6.20 3.80 </line>
<line>LYS CA 10.53 14.28 15.01 12.68 10.35 6.82 6.21 3.81 </line>
<line>THR CA 8.30 11.90 13.49 11.56 10.35 6.53 3.83 </line>
<line>GLU CA 4.73 8.30 9.77 7.83 7.27 3.81 </line>
<line>LYS CA 5.46 8.68 8.58 5.92 3.84 </line>
<line>THR CA 6.52 8.39 6.68 3.82 </line>
<line>GLY CA 5.18 5.34 3.81 </line>
<line>LYS CA 5.52 3.81 </line>
<line>ARG CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLY CA 229</line>
<line>LEU CA 261</line>
<line>PRO CA 204</line>
<line>ALA CA 203</line>
<line>ILE CA 230</line>
<line>GLY CA 181</line>
<line>LYS CA 175</line>
<line>THR CA 190</line>
<line>GLU CA 180</line>
<line>LYS CA 192</line>
<line>THR CA 193</line>
<line>GLY CA 184</line>
<line>LYS CA 223</line>
<line>ARG CA 206</line>
<line>SER CA 221</line>
</n14>
</entryChain>
<parallel>
<x>-75.6989974975586</x>
<y>-97.91500091552734</y>
<z>-50.097999572753906</z>
</parallel>
<rotation>
<x>-0.1379999965429306</x>
<y>-0.9520000219345093</y>
<z>0.2709999978542328</z>
<x>-0.7139999866485596</x>
<y>-0.09399999678134918</y>
<z>-0.6930000185966492</z>
<x>-0.6859999895095825</x>
<y>0.28999999165534973</y>
<z>0.6679999828338623</z>
</rotation>
<rmsd>3.230118989944458</rmsd>
<dmax>4.189239978790283</dmax>
</indel>