NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1COBB-1F1GD
confEVID 1COBB-1F1GD
pdbIDA 1COB
pdbIDB 1F1G
pdbChainA B
pdbChainB D
identity 0.535899996757507
indelSize 2
alignment <alignment>
<seq1>ATKAVCVLKGDGPVQGTIHFEAKG--DTVVVTGSITGLTE-GDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGIAK</seq1>
<seq2>-VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN</seq2>
<ss_1> EEEEEEE EEEEEEEEE -- EEEEEEEEE -EEEEEEEE GGGGG EEEEE EEEEEEE EEEEE GGG EEEEEE </ss_1>
<ss_2>- EEEEEEE EEEEEEE EEEEEEEE EEEEEEEE GGG EEE EEEEEEE EEEEE EEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1COB</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1COBB</entryIDChain>
<sequence>FEAKG--DTVVV</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1226 CA PHE B 20 31.158 49.966 13.574 1.00 11.17 C </line>
<line>ATOM 1237 CA GLU B 21 34.843 49.998 14.480 1.00 12.34 C </line>
<line>ATOM 1246 CA ALA B 22 37.880 49.162 12.468 1.00 45.49 C </line>
<line>ATOM 1251 CA LYS B 23 39.885 46.753 14.574 1.00 36.01 C </line>
<line>ATOM 1260 CA GLY B 24 42.991 45.591 12.857 1.00 50.04 C </line>
<line>ATOM 1264 CA ASP B 25 42.061 44.544 9.363 1.00 56.33 C </line>
<line>ATOM 1272 CA THR B 26 38.511 43.679 10.309 1.00 26.25 C </line>
<line>ATOM 1279 CA VAL B 27 35.254 45.439 11.221 1.00 21.04 C </line>
<line>ATOM 1286 CA VAL B 28 33.537 44.942 14.512 1.00 20.87 C </line>
<line>ATOM 1293 CA VAL B 29 29.816 45.593 14.657 1.00 9.56 C </line>
</atom-coordinate>
<distance-map>
<line> VAL VAL VAL THR ASP GLY LYS ALA GLU PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 4.70 5.64 6.54 10.21 12.88 12.64 9.35 6.86 3.79 </line>
<line>GLU CA 6.69 5.22 5.62 8.41 10.39 9.40 6.00 3.74 </line>
<line>ALA CA 9.09 6.39 4.72 5.93 6.96 6.25 3.78 </line>
<line>LYS CA 10.14 6.60 5.87 5.43 6.06 3.73 </line>
<line>GLY CA 13.30 9.62 7.91 5.50 3.76 </line>
<line>ASP CA 13.38 9.97 7.11 3.77 </line>
<line>THR CA 9.91 6.63 3.81 </line>
<line>VAL CA 6.43 3.75 </line>
<line>VAL CA 3.78 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 379</line>
<line>GLU CA 292</line>
<line>ALA CA 259</line>
<line>LYS CA 187</line>
<line>GLY CA 137</line>
<line>ASP CA 165</line>
<line>THR CA 237</line>
<line>VAL CA 318</line>
<line>VAL CA 303</line>
<line>VAL CA 389</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F1G</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1F1GD</entryIDChain>
<sequence>FEQASESEPTTV</sequence>
<secondary-structure>EE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3441 CA PHE D 484 66.619 -1.314 11.463 1.00 9.30 C </line>
<line>ATOM 3452 CA GLU D 485 62.902 -1.436 12.098 1.00 11.13 C </line>
<line>ATOM 3461 CA GLN D 486 60.381 1.382 12.201 1.00 11.00 C </line>
<line>ATOM 3470 CA ALA D 487 56.607 0.975 12.345 1.00 12.72 C </line>
<line>ATOM 3475 CA SER D 488 55.666 4.435 11.138 1.00 14.49 C </line>
<line>ATOM 3481 CA GLU D 489 57.407 7.698 10.406 1.00 14.99 C </line>
<line>ATOM 3490 CA SER D 490 56.907 9.440 13.754 1.00 16.19 C </line>
<line>ATOM 3496 CA GLU D 491 57.836 6.416 15.872 1.00 14.88 C </line>
<line>ATOM 3505 CA PRO D 492 61.349 5.441 16.974 1.00 13.90 C </line>
<line>ATOM 3512 CA THR D 493 63.541 3.261 14.827 1.00 11.11 C </line>
<line>ATOM 3519 CA THR D 494 64.989 0.238 16.591 1.00 10.99 C </line>
<line>ATOM 3526 CA VAL D 495 68.608 -0.239 15.602 1.00 11.06 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR THR PRO GLU SER GLU SER ALA GLN GLU PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 4.72 5.60 6.46 10.19 12.50 14.67 12.93 12.37 10.31 6.84 3.77 </line>
<line>GLU CA 6.80 5.23 5.47 8.57 10.08 12.53 10.79 9.37 6.75 3.78 </line>
<line>GLN CA 9.05 6.47 4.52 6.34 6.73 8.91 7.21 5.72 3.80 </line>
<line>ALA CA 12.49 9.42 7.71 7.99 6.60 8.59 7.04 3.78 </line>
<line>SER CA 14.47 11.59 8.78 8.21 5.57 5.78 3.77 </line>
<line>GLU CA 14.68 12.30 8.77 7.99 5.63 3.81 </line>
<line>SER CA 15.30 12.57 9.13 6.79 3.81 </line>
<line>GLU CA 12.66 9.48 6.60 3.81 </line>
<line>PRO CA 9.32 6.36 3.76 </line>
<line>THR CA 6.21 3.79 </line>
<line>THR CA 3.78 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 403</line>
<line>GLU CA 314</line>
<line>GLN CA 291</line>
<line>ALA CA 204</line>
<line>SER CA 189</line>
<line>GLU CA 208</line>
<line>SER CA 177</line>
<line>GLU CA 195</line>
<line>PRO CA 265</line>
<line>THR CA 333</line>
<line>THR CA 322</line>
<line>VAL CA 405</line>
</n14>
</entryChain>
<parallel>
<x>-22.790000915527344</x>
<y>44.49599838256836</y>
<z>-1.0089999437332153</z>
</parallel>
<rotation>
<x>-0.8759999871253967</x>
<y>0.2160000056028366</y>
<z>-0.4309999942779541</z>
<x>0.4129999876022339</x>
<y>-0.125</y>
<z>-0.9020000100135803</z>
<x>-0.24899999797344208</x>
<y>-0.9679999947547913</y>
<z>0.019999999552965164</z>
</rotation>
<rmsd>1.4172589778900146</rmsd>
<dmax>2.220684051513672</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1COB</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1COBB</entryIDChain>
<sequence>TGLTE-GDHGF</sequence>
<secondary-structure>E -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1325 CA THR B 34 14.637 46.902 20.539 1.00 29.49 C </line>
<line>ATOM 1332 CA GLY B 35 10.949 46.345 19.919 1.00 27.54 C </line>
<line>ATOM 1336 CA LEU B 36 11.663 43.198 17.952 1.00 18.63 C </line>
<line>ATOM 1344 CA THR B 37 9.557 40.068 17.766 1.00 21.62 C </line>
<line>ATOM 1351 CA GLU B 38 11.254 37.306 19.659 1.00 24.90 C </line>
<line>ATOM 1360 CA GLY B 39 13.513 35.151 17.451 1.00 22.84 C </line>
<line>ATOM 1364 CA ASP B 40 15.819 35.789 14.502 1.00 22.27 C </line>
<line>ATOM 1372 CA HIS B 41 15.752 38.785 12.175 1.00 21.25 C </line>
<line>ATOM 1382 CA GLY B 42 17.735 39.295 8.978 1.00 8.68 C </line>
<line>ATOM 1386 CA PHE B 43 20.417 42.003 9.447 1.00 18.79 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY HIS ASP GLY GLU THR LEU GLY THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 13.43 14.18 11.71 12.70 12.20 10.21 8.96 5.41 3.78 </line>
<line>GLY CA 14.77 14.68 11.84 12.83 11.75 9.05 6.78 3.78 </line>
<line>LEU CA 12.26 11.52 8.34 9.17 8.27 6.15 3.78 </line>
<line>THR CA 13.82 12.03 8.44 8.26 6.32 3.75 </line>
<line>GLU CA 14.50 12.65 8.86 7.05 3.82 </line>
<line>GLY CA 12.60 10.33 6.79 3.80 </line>
<line>ASP CA 9.24 6.82 3.79 </line>
<line>HIS CA 6.29 3.80 </line>
<line>GLY CA 3.84 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>THR CA 292</line>
<line>GLY CA 254</line>
<line>LEU CA 313</line>
<line>THR CA 250</line>
<line>GLU CA 206</line>
<line>GLY CA 228</line>
<line>ASP CA 303</line>
<line>HIS CA 393</line>
<line>GLY CA 460</line>
<line>PHE CA 552</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F1G</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1F1GD</entryIDChain>
<sequence>AGNSPNAERGF</sequence>
<secondary-structure>E EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3568 CA ALA D 500 82.960 -8.574 15.104 1.00 9.41 C </line>
<line>ATOM 3573 CA GLY D 501 86.695 -7.942 14.876 1.00 9.07 C </line>
<line>ATOM 3577 CA ASN D 502 86.870 -4.646 16.759 1.00 9.62 C </line>
<line>ATOM 3585 CA SER D 503 89.421 -3.777 19.417 1.00 10.71 C </line>
<line>ATOM 3591 CA PRO D 504 88.399 -5.490 22.679 1.00 11.76 C </line>
<line>ATOM 3598 CA ASN D 505 87.058 -3.753 25.758 1.00 13.11 C </line>
<line>ATOM 3606 CA ALA D 506 86.537 -0.483 23.894 1.00 12.46 C </line>
<line>ATOM 3611 CA GLU D 507 84.045 2.065 22.628 1.00 13.43 C </line>
<line>ATOM 3620 CA ARG D 508 83.764 2.612 18.892 1.00 9.62 C </line>
<line>ATOM 3631 CA GLY D 509 82.044 5.374 16.972 1.00 10.60 C </line>
<line>ATOM 3635 CA PHE D 510 78.938 4.328 15.078 1.00 9.35 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY ARG GLU ALA ASN PRO SER ASN GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 13.51 14.10 11.84 13.08 12.47 12.39 9.82 9.13 5.78 3.79 </line>
<line>GLY CA 14.52 14.26 11.67 12.93 11.70 11.67 8.35 6.74 3.80 </line>
<line>ASN CA 12.09 11.12 8.18 9.35 8.27 9.05 6.17 3.79 </line>
<line>SER CA 13.94 12.01 8.55 8.56 6.26 6.77 3.82 </line>
<line>PRO CA 15.61 13.82 10.07 8.72 5.48 3.78 </line>
<line>ASN CA 15.66 13.62 9.92 7.26 3.80 </line>
<line>ALA CA 12.59 10.12 6.50 3.78 </line>
<line>GLU CA 9.39 6.85 3.79 </line>
<line>ARG CA 6.39 3.78 </line>
<line>GLY CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ALA CA 298</line>
<line>GLY CA 269</line>
<line>ASN CA 318</line>
<line>SER CA 247</line>
<line>PRO CA 197</line>
<line>ASN CA 178</line>
<line>ALA CA 237</line>
<line>GLU CA 308</line>
<line>ARG CA 397</line>
<line>GLY CA 470</line>
<line>PHE CA 554</line>
</n14>
</entryChain>
<parallel>
<x>-73.19300079345703</x>
<y>43.72200012207031</y>
<z>-1.7860000133514404</z>
</parallel>
<rotation>
<x>-0.9800000190734863</x>
<y>-0.1889999955892563</y>
<z>-0.061000000685453415</z>
<x>0.1340000033378601</x>
<y>-0.40400001406669617</y>
<z>-0.9049999713897705</z>
<x>0.1469999998807907</x>
<y>-0.8949999809265137</y>
<z>0.42100000381469727</z>
</rotation>
<rmsd>0.5637789964675903</rmsd>
<dmax>1.3248790502548218</dmax>
</indel>