NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1COOA-2NO2A
confEVID 1COOA-2NO2A
pdbIDA 1COO
pdbIDB 2NO2
pdbChainA A
pdbChainB A
identity 0.0610000006854534
indelSize 2
alignment <alignment>
<seq1>FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS--LTEIKDVLASRGLSLGMRLENWPPASIADE-----------------------</seq1>
<seq2>-GSHADLLRKNAEVTKQVSMARQAQVDLEREKKE---LEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV</seq2>
<ss_1> IIIHHHHH HHHHH HHHGGG HH--HHHHHHHHHH -----------------------</ss_1>
<ss_2>- HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1COO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1COOA</entryIDChain>
<sequence>LGKKS--LTEIK</sequence>
<secondary-structure> HH--HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 745 CA LEU A 295 63.448 -6.373 -7.609 1.00 0.81 C </line>
<line>ATOM 764 CA GLY A 296 64.398 -6.630 -11.311 1.00 1.03 C </line>
<line>ATOM 771 CA LYS A 297 67.180 -7.668 -13.726 1.00 0.79 C </line>
<line>ATOM 793 CA LYS A 298 68.422 -4.184 -14.690 1.00 0.63 C </line>
<line>ATOM 815 CA SER A 299 69.104 -3.836 -10.950 1.00 0.52 C </line>
<line>ATOM 826 CA LEU A 300 71.294 -6.964 -10.774 1.00 0.49 C </line>
<line>ATOM 845 CA THR A 301 73.663 -5.277 -13.249 1.00 0.48 C </line>
<line>ATOM 859 CA GLU A 302 74.056 -2.338 -10.836 1.00 0.48 C </line>
<line>ATOM 874 CA ILE A 303 74.393 -4.266 -7.558 1.00 0.40 C </line>
<line>ATOM 893 CA LYS A 304 76.948 -6.394 -9.434 1.00 0.45 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ILE GLU THR LEU SER LYS LYS GLY LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.62 11.15 11.80 11.72 8.48 7.04 8.93 7.28 3.83 </line>
<line>GLY CA 12.69 10.93 10.58 9.56 6.92 5.48 5.80 3.83 </line>
<line>LYS CA 10.75 10.08 9.17 6.93 5.11 5.11 3.82 </line>
<line>LYS CA 10.26 9.30 7.07 5.54 5.60 3.82 </line>
<line>SER CA 8.39 6.30 5.17 5.31 3.82 </line>
<line>LEU CA 5.84 5.22 5.39 3.82 </line>
<line>THR CA 5.16 5.83 3.82 </line>
<line>GLU CA 5.17 3.82 </line>
<line>ILE CA 3.82 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>LEU CA 548</line>
<line>GLY CA 476</line>
<line>LYS CA 451</line>
<line>LYS CA 436</line>
<line>SER CA 614</line>
<line>LEU CA 662</line>
<line>THR CA 536</line>
<line>GLU CA 658</line>
<line>ILE CA 863</line>
<line>LYS CA 698</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NO2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NO2A</entryIDChain>
<sequence>DQGQRKTQEQLE</sequence>
<secondary-structure>HHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 337 CA ASP A 522 -0.519 12.805 45.359 1.00114.66 C </line>
<line>ATOM 345 CA GLN A 523 -3.178 13.879 42.836 1.00106.93 C </line>
<line>ATOM 354 CA GLY A 524 -2.355 17.554 43.145 1.00 92.74 C </line>
<line>ATOM 358 CA GLN A 525 1.297 17.050 42.310 1.00104.08 C </line>
<line>ATOM 367 CA ARG A 526 0.495 15.057 39.178 1.00 88.16 C </line>
<line>ATOM 378 CA LYS A 527 -2.014 17.632 37.946 1.00 77.87 C </line>
<line>ATOM 387 CA THR A 528 0.737 20.225 38.234 1.00 79.69 C </line>
<line>ATOM 394 CA GLN A 529 2.784 17.984 35.944 1.00 78.61 C </line>
<line>ATOM 403 CA GLU A 530 0.223 17.267 33.238 1.00 79.03 C </line>
<line>ATOM 412 CA GLN A 531 -0.259 21.023 33.045 1.00 70.77 C </line>
<line>ATOM 421 CA LEU A 532 3.469 21.726 32.618 1.00 64.12 C </line>
<line>ATOM 429 CA GLU A 533 3.446 19.045 29.889 1.00 53.07 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LEU GLN GLU GLN THR LYS ARG GLN GLY GLN ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 17.15 16.06 14.81 12.94 11.24 10.36 8.97 6.66 5.53 5.55 3.82 </line>
<line>GLN CA 15.43 14.50 12.47 10.73 9.99 8.76 6.27 5.32 5.51 3.78 </line>
<line>GLY CA 14.55 12.73 10.88 10.24 8.86 6.39 5.21 5.49 3.78 </line>
<line>GLN CA 12.76 10.98 10.20 9.14 6.60 5.20 5.51 3.80 </line>
<line>ARG CA 10.53 9.82 8.59 6.34 4.93 5.26 3.80 </line>
<line>LYS CA 9.83 8.67 6.21 5.23 5.21 3.79 </line>
<line>THR CA 8.85 6.42 5.34 5.83 3.80 </line>
<line>GLN CA 6.18 5.05 5.19 3.79 </line>
<line>GLU CA 4.98 5.55 3.79 </line>
<line>GLN CA 5.25 3.82 </line>
<line>LEU CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASP CA 140</line>
<line>GLN CA 144</line>
<line>GLY CA 147</line>
<line>GLN CA 141</line>
<line>ARG CA 138</line>
<line>LYS CA 139</line>
<line>THR CA 140</line>
<line>GLN CA 144</line>
<line>GLU CA 147</line>
<line>GLN CA 144</line>
<line>LEU CA 144</line>
<line>GLU CA 141</line>
</n14>
</entryChain>
<parallel>
<x>69.13500213623047</x>
<y>-21.986000061035156</y>
<z>-51.025001525878906</z>
</parallel>
<rotation>
<x>-0.008999999612569809</x>
<y>0.968999981880188</y>
<z>0.24799999594688416</z>
<x>0.2809999883174896</x>
<y>0.23999999463558197</y>
<z>-0.9290000200271606</z>
<x>-0.9599999785423279</x>
<y>0.06199999898672104</y>
<z>-0.27399998903274536</z>
</rotation>
<rmsd>3.17451810836792</rmsd>
<dmax>4.774240970611572</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NO2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NO2A</entryIDChain>
<sequence>REKKE---LEDSL</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 217 CA ARG A 508 -9.294 5.906 63.554 1.00 72.65 C </line>
<line>ATOM 228 CA GLU A 509 -10.806 9.103 62.147 1.00 73.49 C </line>
<line>ATOM 237 CA LYS A 510 -7.273 10.352 61.814 1.00 82.35 C </line>
<line>ATOM 246 CA LYS A 511 -6.257 7.326 59.770 1.00 68.14 C </line>
<line>ATOM 255 CA GLU A 512 -8.673 8.315 57.015 1.00 74.39 C </line>
<line>ATOM 264 CA LEU A 513 -7.597 11.962 57.132 1.00 57.24 C </line>
<line>ATOM 272 CA GLU A 514 -4.035 10.701 56.736 1.00 59.32 C </line>
<line>ATOM 281 CA ASP A 515 -5.087 8.733 53.657 1.00 71.91 C </line>
<line>ATOM 289 CA SER A 516 -7.304 11.423 52.145 1.00 69.98 C </line>
<line>ATOM 295 CA LEU A 517 -4.515 13.955 52.620 1.00 59.30 C </line>
</atom-coordinate>
<distance-map>
<line> LEU SER ASP GLU LEU GLU LYS LYS GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 14.39 12.83 11.12 9.86 8.99 7.00 5.06 5.18 3.81 </line>
<line>GLU CA 12.40 10.85 10.24 8.81 6.60 5.61 5.43 3.76 </line>
<line>LYS CA 10.25 9.73 8.60 6.03 4.96 5.40 3.79 </line>
<line>LYS CA 9.90 8.72 6.38 5.05 5.50 3.80 </line>
<line>GLU CA 8.27 5.94 4.93 5.22 3.80 </line>
<line>LEU CA 5.82 5.02 5.37 3.80 </line>
<line>GLU CA 5.27 5.68 3.80 </line>
<line>ASP CA 5.35 3.80 </line>
<line>SER CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 146</line>
<line>GLU CA 149</line>
<line>LYS CA 152</line>
<line>LYS CA 148</line>
<line>GLU CA 147</line>
<line>LEU CA 146</line>
<line>GLU CA 145</line>
<line>ASP CA 147</line>
<line>SER CA 144</line>
<line>LEU CA 146</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1COO</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1COOA</entryIDChain>
<sequence>IGDLVQRTEVELL</sequence>
<secondary-structure>HHHHH HHHGG</secondary-structure>
<atom-coordinate>
<line>ATOM 469 CA ILE A 278 76.112 -2.106 0.852 1.00 0.34 C </line>
<line>ATOM 488 CA GLY A 279 78.518 -4.175 2.969 1.00 0.34 C </line>
<line>ATOM 495 CA ASP A 280 75.751 -6.671 3.750 1.00 0.40 C </line>
<line>ATOM 507 CA LEU A 281 74.606 -6.259 0.131 1.00 0.39 C </line>
<line>ATOM 526 CA VAL A 282 77.823 -7.855 -1.169 1.00 0.38 C </line>
<line>ATOM 542 CA GLN A 283 77.569 -10.147 1.878 1.00 0.44 C </line>
<line>ATOM 559 CA ARG A 284 74.322 -11.628 0.483 1.00 0.54 C </line>
<line>ATOM 583 CA THR A 285 73.253 -13.486 -2.681 1.00 0.56 C </line>
<line>ATOM 597 CA GLU A 286 71.992 -11.767 -5.852 1.00 0.81 C </line>
<line>ATOM 612 CA VAL A 287 70.698 -15.211 -6.873 1.00 1.11 C </line>
<line>ATOM 628 CA GLU A 288 67.627 -15.033 -4.629 1.00 1.05 C </line>
<line>ATOM 643 CA LEU A 289 67.815 -11.261 -4.016 1.00 0.68 C </line>
<line>ATOM 662 CA LEU A 290 67.246 -10.691 -7.756 1.00 0.64 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU GLU VAL GLU THR ARG GLN VAL LEU ASP GLY ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.05 13.28 16.41 16.15 12.46 12.25 9.70 8.24 6.33 4.48 5.42 3.81 </line>
<line>GLY CA 16.87 14.61 17.15 16.73 13.34 12.10 8.91 6.14 5.58 5.26 3.81 </line>
<line>ASP CA 14.86 12.01 14.36 14.54 11.50 9.70 6.11 4.35 5.47 3.82 </line>
<line>LEU CA 11.66 9.40 12.18 12.02 8.54 7.87 5.39 5.19 3.82 </line>
<line>VAL CA 12.78 10.95 12.94 11.72 8.44 7.41 5.41 3.82 </line>
<line>GLN CA 14.13 11.45 12.85 12.22 9.67 7.11 3.83 </line>
<line>ARG CA 10.90 7.92 9.09 8.95 6.75 3.82 </line>
<line>THR CA 8.35 6.03 6.15 5.20 3.82 </line>
<line>GLU CA 5.23 4.59 5.59 3.82 </line>
<line>VAL CA 5.76 5.66 3.81 </line>
<line>GLU CA 5.36 3.83 </line>
<line>LEU CA 3.83 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ILE CA 941</line>
<line>GLY CA 840</line>
<line>ASP CA 799</line>
<line>LEU CA 932</line>
<line>VAL CA 865</line>
<line>GLN CA 712</line>
<line>ARG CA 666</line>
<line>THR CA 586</line>
<line>GLU CA 674</line>
<line>VAL CA 455</line>
<line>GLU CA 444</line>
<line>LEU CA 620</line>
<line>LEU CA 582</line>
</n14>
</entryChain>
<parallel>
<x>-81.51899719238281</x>
<y>17.68400001525879</y>
<z>60.33100128173828</z>
</parallel>
<rotation>
<x>-0.8980000019073486</x>
<y>0.40700000524520874</y>
<z>0.16599999368190765</z>
<x>-0.3199999928474426</x>
<y>-0.8640000224113464</y>
<z>0.3889999985694885</z>
<x>0.3009999990463257</x>
<y>0.29600000381469727</y>
<z>0.906000018119812</z>
</rotation>
<rmsd>4.075586795806885</rmsd>
<dmax>5.974746227264404</dmax>
</indel>