NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CPDA-2CL4X
confEVID 1CPDA-2CL4X
pdbIDA 1CPD
pdbIDB 2CL4
pdbChainA A
pdbChainB X
identity 0.322499990463257
indelSize 2
alignment <alignment>
<seq1>LVHVASVEKGRSYEDFQK---VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq1>
<seq2>--SGKSYPT-VSADYQKAVEKAKKKLRGFIAEK-------RCAPLMLRLAWHSAGTFDKGTKTGGPF-GTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNPLIFDNSYFTELLSGEKE---------------GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADA-----------------</seq2>
<ss_1> HHHHHH---HHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE GGG HHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHH </ss_1>
<ss_2>-- - HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHH - GGG HHHH GGG HHHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHHIIIIII HHHHHHHGGGGG EEE HHHHHHHH --------------- HHHH HHHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>EDFQK---VYNAI</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 102 CA GLU A 17 21.360 53.914 5.104 1.00 29.92 C </line>
<line>ATOM 111 CA ASP A 18 21.998 54.244 8.796 1.00 23.46 C </line>
<line>ATOM 119 CA PHE A 19 18.354 55.023 9.441 1.00 19.96 C </line>
<line>ATOM 130 CA GLN A 20 17.163 52.348 7.077 1.00 17.66 C </line>
<line>ATOM 139 CA LYS A 21 18.910 49.901 9.327 1.00 23.05 C </line>
<line>ATOM 148 CA VAL A 22 17.289 51.109 12.448 1.00 13.78 C </line>
<line>ATOM 155 CA TYR A 23 13.951 50.800 10.615 1.00 16.65 C </line>
<line>ATOM 167 CA ASN A 24 14.752 47.289 9.443 1.00 15.68 C </line>
<line>ATOM 175 CA ALA A 25 15.590 46.259 13.029 1.00 14.50 C </line>
<line>ATOM 180 CA ILE A 26 12.296 47.514 14.333 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN TYR VAL LYS GLN PHE ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.43 12.44 10.31 9.74 8.85 6.32 4.89 5.39 3.76 </line>
<line>ASP CA 13.04 11.08 10.06 8.94 6.73 5.36 5.47 3.78 </line>
<line>PHE CA 10.82 9.87 8.53 6.21 5.05 5.15 3.76 </line>
<line>GLN CA 9.99 8.66 6.08 5.02 5.51 3.76 </line>
<line>LYS CA 8.63 6.16 4.91 5.20 3.72 </line>
<line>VAL CA 6.43 5.17 5.48 3.82 </line>
<line>TYR CA 5.23 5.40 3.79 </line>
<line>ASN CA 5.48 3.82 </line>
<line>ALA CA 3.76 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 275</line>
<line>ASP CA 318</line>
<line>PHE CA 430</line>
<line>GLN CA 401</line>
<line>LYS CA 382</line>
<line>VAL CA 443</line>
<line>TYR CA 518</line>
<line>ASN CA 397</line>
<line>ALA CA 397</line>
<line>ILE CA 462</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2CL4</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2CL4X</entryIDChain>
<sequence>DYQKAVEKAKKKL</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 71 CA ASP X 11 46.756 59.074 28.645 1.00 12.48 C </line>
<line>ATOM 79 CA TYR X 12 43.873 58.141 26.332 1.00 9.96 C </line>
<line>ATOM 91 CA GLN X 13 42.783 55.427 28.780 1.00 11.63 C </line>
<line>ATOM 100 CA LYS X 14 42.940 57.867 31.714 1.00 11.72 C </line>
<line>ATOM 109 CA ALA X 15 40.732 60.307 29.784 1.00 10.17 C </line>
<line>ATOM 114 CA VAL X 16 38.191 57.547 29.074 1.00 9.42 C </line>
<line>ATOM 121 CA GLU X 17 37.950 56.766 32.783 1.00 10.51 C </line>
<line>ATOM 130 CA LYS X 18 37.656 60.394 33.815 1.00 10.55 C </line>
<line>ATOM 139 CA ALA X 19 35.141 61.179 31.055 1.00 8.74 C </line>
<line>ATOM 144 CA LYS X 20 33.048 58.173 32.099 1.00 8.77 C </line>
<line>ATOM 153 CA LYS X 21 32.673 59.630 35.604 1.00 8.58 C </line>
<line>ATOM 162 CA LYS X 22 31.941 63.150 34.367 1.00 9.14 C </line>
<line>ATOM 171 CA LEU X 23 29.344 61.728 31.944 1.00 7.19 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS LYS ALA LYS GLU VAL ALA LYS GLN TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 17.92 16.40 15.72 14.17 12.05 10.55 10.00 8.71 6.25 5.04 5.39 3.81 </line>
<line>TYR CA 15.98 15.23 14.62 12.27 10.38 9.99 8.86 6.34 5.15 5.47 3.81 </line>
<line>GLN CA 15.18 14.44 12.90 10.65 9.83 8.74 6.42 5.07 5.39 3.82 </line>
<line>LYS CA 14.14 12.49 11.12 9.90 8.50 6.22 5.22 5.44 3.81 </line>
<line>ALA CA 11.68 10.31 9.96 8.30 5.80 5.07 5.41 3.82 </line>
<line>VAL CA 10.20 9.92 8.80 6.00 5.14 5.56 3.80 </line>
<line>GLU CA 9.97 8.91 6.63 5.15 5.51 3.78 </line>
<line>LYS CA 8.62 6.37 5.35 5.40 3.82 </line>
<line>ALA CA 5.89 5.01 5.40 3.81 </line>
<line>LYS CA 5.14 5.58 3.81 </line>
<line>LYS CA 5.37 3.80 </line>
<line>LYS CA 3.83 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 165</line>
<line>TYR CA 259</line>
<line>GLN CA 256</line>
<line>LYS CA 222</line>
<line>ALA CA 282</line>
<line>VAL CA 362</line>
<line>GLU CA 304</line>
<line>LYS CA 276</line>
<line>ALA CA 365</line>
<line>LYS CA 380</line>
<line>LYS CA 271</line>
<line>LYS CA 305</line>
<line>LEU CA 396</line>
</n14>
</entryChain>
<parallel>
<x>-21.770999908447266</x>
<y>-6.895999908447266</y>
<z>-21.469999313354492</z>
</parallel>
<rotation>
<x>0.578000009059906</x>
<y>0.3199999928474426</y>
<z>-0.7509999871253967</z>
<x>0.5889999866485596</x>
<y>-0.800000011920929</y>
<z>0.1120000034570694</z>
<x>-0.5649999976158142</x>
<y>-0.5070000290870667</y>
<z>-0.6510000228881836</z>
</rotation>
<rmsd>2.555964946746826</rmsd>
<dmax>3.769918918609619</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1191 CA ARG A 155 -11.500 70.836 18.181 1.00 21.05 C </line>
<line>ATOM 1202 CA THR A 156 -10.109 73.083 20.878 1.00 21.67 C </line>
<line>ATOM 1209 CA PHE A 157 -7.506 70.592 22.034 1.00 23.55 C </line>
<line>ATOM 1220 CA PHE A 158 -6.078 69.939 18.549 1.00 20.51 C </line>
<line>ATOM 1231 CA GLN A 159 -5.810 73.512 17.922 1.00 27.02 C </line>
<line>ATOM 1240 CA ARG A 160 -3.080 73.680 20.489 1.00 16.38 C </line>
<line>ATOM 1251 CA LEU A 161 -1.160 71.552 18.082 1.00 18.36 C </line>
<line>ATOM 1259 CA ASN A 162 -2.074 73.496 15.074 1.00 20.64 C </line>
<line>ATOM 1267 CA MET A 163 -4.159 70.829 13.567 1.00 14.80 C </line>
<line>ATOM 1275 CA ASN A 164 -7.284 71.705 11.571 1.00 16.96 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.89 8.67 10.28 10.37 9.18 6.29 5.51 5.55 3.78 </line>
<line>THR CA 9.82 9.69 9.92 9.50 7.07 5.23 5.62 3.78 </line>
<line>PHE CA 10.52 9.11 9.29 7.54 5.61 5.32 3.82 </line>
<line>PHE CA 7.30 5.41 6.38 5.20 5.17 3.64 </line>
<line>GLN CA 6.77 5.37 4.70 5.05 3.75 </line>
<line>ARG CA 10.06 7.56 5.51 3.74 </line>
<line>LEU CA 8.94 5.47 3.70 </line>
<line>ASN CA 6.53 3.71 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>THR CA 280</line>
<line>PHE CA 349</line>
<line>PHE CA 395</line>
<line>GLN CA 308</line>
<line>ARG CA 318</line>
<line>LEU CA 381</line>
<line>ASN CA 322</line>
<line>MET CA 367</line>
<line>ASN CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2CL4</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2CL4X</entryIDChain>
<sequence>RDVFGKAMGLT</sequence>
<secondary-structure>HIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1076 CA ARG X 142 15.940 42.735 9.184 1.00 13.28 C </line>
<line>ATOM 1087 CA ASP X 143 16.976 44.820 6.168 1.00 14.69 C </line>
<line>ATOM 1095 CA VAL X 144 18.363 47.538 8.440 1.00 13.33 C </line>
<line>ATOM 1102 CA PHE X 145 19.753 45.667 11.470 1.00 11.99 C </line>
<line>ATOM 1113 CA GLY X 146 20.618 42.457 9.601 1.00 13.41 C </line>
<line>ATOM 1117 CA LYS X 147 21.432 43.120 5.947 1.00 15.37 C </line>
<line>ATOM 1126 CA ALA X 148 23.053 46.526 6.613 1.00 13.95 C </line>
<line>ATOM 1131 CA MET X 149 24.405 46.549 10.184 1.00 13.28 C </line>
<line>ATOM 1139 CA GLY X 150 25.037 42.796 10.417 1.00 13.88 C </line>
<line>ATOM 1143 CA LEU X 151 23.329 42.245 13.776 1.00 13.28 C </line>
<line>ATOM 1151 CA THR X 152 21.211 39.207 14.686 1.00 13.03 C </line>
</atom-coordinate>
<distance-map>
<line> THR LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.40 8.71 9.18 9.34 8.46 6.39 4.70 5.33 5.43 3.81 </line>
<line>ASP CA 11.05 10.24 9.33 8.62 6.33 4.77 5.53 6.04 3.80 </line>
<line>VAL CA 10.79 9.01 8.42 6.37 5.13 5.93 5.68 3.82 </line>
<line>PHE CA 7.36 5.46 6.11 4.91 5.93 6.31 3.81 </line>
<line>GLY CA 6.06 4.98 4.51 5.61 5.60 3.80 </line>
<line>LYS CA 9.58 8.10 5.75 6.21 3.83 </line>
<line>ALA CA 11.05 8.35 5.69 3.82 </line>
<line>MET CA 9.19 5.71 3.81 </line>
<line>GLY CA 6.76 3.81 </line>
<line>LEU CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 325</line>
<line>ASP CA 273</line>
<line>VAL CA 367</line>
<line>PHE CA 410</line>
<line>GLY CA 319</line>
<line>LYS CA 256</line>
<line>ALA CA 319</line>
<line>MET CA 393</line>
<line>GLY CA 346</line>
<line>LEU CA 386</line>
<line>THR CA 322</line>
</n14>
</entryChain>
<parallel>
<x>-26.433000564575195</x>
<y>27.200000762939453</y>
<z>9.892000198364258</z>
</parallel>
<rotation>
<x>0.9160000085830688</x>
<y>0.33000001311302185</y>
<z>-0.22599999606609344</z>
<x>0.37400001287460327</x>
<y>-0.5040000081062317</y>
<z>0.7789999842643738</z>
<x>0.14300000667572021</x>
<y>-0.7979999780654907</y>
<z>-0.5849999785423279</z>
</rotation>
<rmsd>0.8541929721832275</rmsd>
<dmax>1.6587350368499756</dmax>
</indel>