NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CPDA-2VO2X
confEVID 1CPDA-2VO2X
pdbIDA 1CPD
pdbIDB 2VO2
pdbChainA A
pdbChainB X
identity 0.318699985742569
indelSize 2
alignment <alignment>
<seq1>LVHVASVEKGRSYEDFQK---VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq1>
<seq2>----GKSYPTVSADYQKAVEKAKKKLRGFIAEKR-------CAPLMLRLAAHSAGTFDKGTKTGGPF-GTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKE---------------GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD------------------</seq2>
<ss_1> HHHHHH---HHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE GGG HHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHH </ss_1>
<ss_2>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHGGG - GGG GGG HHHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHHIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHHH HHHHHHHHHHHHHHHH ------------------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>EDFQK---VYNAI</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 102 CA GLU A 17 21.360 53.914 5.104 1.00 29.92 C </line>
<line>ATOM 111 CA ASP A 18 21.998 54.244 8.796 1.00 23.46 C </line>
<line>ATOM 119 CA PHE A 19 18.354 55.023 9.441 1.00 19.96 C </line>
<line>ATOM 130 CA GLN A 20 17.163 52.348 7.077 1.00 17.66 C </line>
<line>ATOM 139 CA LYS A 21 18.910 49.901 9.327 1.00 23.05 C </line>
<line>ATOM 148 CA VAL A 22 17.289 51.109 12.448 1.00 13.78 C </line>
<line>ATOM 155 CA TYR A 23 13.951 50.800 10.615 1.00 16.65 C </line>
<line>ATOM 167 CA ASN A 24 14.752 47.289 9.443 1.00 15.68 C </line>
<line>ATOM 175 CA ALA A 25 15.590 46.259 13.029 1.00 14.50 C </line>
<line>ATOM 180 CA ILE A 26 12.296 47.514 14.333 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN TYR VAL LYS GLN PHE ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.43 12.44 10.31 9.74 8.85 6.32 4.89 5.39 3.76 </line>
<line>ASP CA 13.04 11.08 10.06 8.94 6.73 5.36 5.47 3.78 </line>
<line>PHE CA 10.82 9.87 8.53 6.21 5.05 5.15 3.76 </line>
<line>GLN CA 9.99 8.66 6.08 5.02 5.51 3.76 </line>
<line>LYS CA 8.63 6.16 4.91 5.20 3.72 </line>
<line>VAL CA 6.43 5.17 5.48 3.82 </line>
<line>TYR CA 5.23 5.40 3.79 </line>
<line>ASN CA 5.48 3.82 </line>
<line>ALA CA 3.76 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 275</line>
<line>ASP CA 318</line>
<line>PHE CA 430</line>
<line>GLN CA 401</line>
<line>LYS CA 382</line>
<line>VAL CA 443</line>
<line>TYR CA 518</line>
<line>ASN CA 397</line>
<line>ALA CA 397</line>
<line>ILE CA 462</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2VO2</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2VO2X</entryIDChain>
<sequence>DYQKAVEKAKKKL</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 69 CA ASP X 11 46.964 59.430 28.924 1.00 17.16 C </line>
<line>ATOM 77 CA TYR X 12 44.108 58.441 26.541 1.00 15.26 C </line>
<line>ATOM 91 CA AGLN X 13 42.935 55.764 29.063 0.50 15.34 C </line>
<line>ATOM 104 CA LYS X 14 43.182 58.315 31.912 1.00 16.62 C </line>
<line>ATOM 113 CA ALA X 15 40.934 60.745 29.932 1.00 13.52 C </line>
<line>ATOM 118 CA VAL X 16 38.355 57.962 29.318 1.00 13.50 C </line>
<line>ATOM 125 CA GLU X 17 38.143 57.162 33.070 1.00 15.37 C </line>
<line>ATOM 136 CA ALYS X 18 37.793 60.811 34.050 0.50 13.55 C </line>
<line>ATOM 149 CA ALA X 19 35.332 61.549 31.215 1.00 11.57 C </line>
<line>ATOM 154 CA LYS X 20 33.246 58.555 32.321 1.00 11.60 C </line>
<line>ATOM 163 CA ALYS X 21 32.769 59.984 35.859 0.50 11.62 C </line>
<line>ATOM 181 CA LYS X 22 32.066 63.525 34.675 1.00 13.58 C </line>
<line>ATOM 190 CA LEU X 23 29.547 62.109 32.131 1.00 13.87 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS LYS ALA LYS GLU VAL ALA LYS GLN TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 17.91 16.49 15.81 14.16 12.04 10.60 10.01 8.74 6.25 4.95 5.45 3.85 </line>
<line>TYR CA 16.02 15.40 14.76 12.30 10.42 10.09 8.94 6.41 5.18 5.45 3.86 </line>
<line>GLN CA 15.13 14.49 12.94 10.60 9.79 8.76 6.40 5.09 5.44 3.83 </line>
<line>LYS CA 14.15 12.58 11.26 9.95 8.52 6.31 5.30 5.49 3.86 </line>
<line>ALA CA 11.68 10.43 10.12 8.34 5.80 5.18 5.52 3.84 </line>
<line>VAL CA 10.13 9.96 8.84 5.96 5.06 5.55 3.84 </line>
<line>GLU CA 9.96 8.94 6.68 5.15 5.53 3.79 </line>
<line>LYS CA 8.57 6.37 5.40 5.36 3.83 </line>
<line>ALA CA 5.88 5.15 5.53 3.81 </line>
<line>LYS CA 5.13 5.62 3.85 </line>
<line>LYS CA 5.37 3.80 </line>
<line>LYS CA 3.85 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 167</line>
<line>TYR CA 260</line>
<line>GLN CA 255</line>
<line>LYS CA 221</line>
<line>ALA CA 284</line>
<line>VAL CA 359</line>
<line>GLU CA 302</line>
<line>LYS CA 274</line>
<line>ALA CA 362</line>
<line>LYS CA 378</line>
<line>LYS CA 273</line>
<line>LYS CA 302</line>
<line>LEU CA 396</line>
</n14>
</entryChain>
<parallel>
<x>-21.961999893188477</x>
<y>-7.269000053405762</y>
<z>-21.68899917602539</z>
</parallel>
<rotation>
<x>0.578000009059906</x>
<y>0.32499998807907104</y>
<z>-0.7490000128746033</z>
<x>0.5830000042915344</x>
<y>-0.8059999942779541</y>
<z>0.10000000149011612</z>
<x>-0.5709999799728394</x>
<y>-0.49399998784065247</y>
<z>-0.6549999713897705</z>
</rotation>
<rmsd>2.579000949859619</rmsd>
<dmax>3.87723708152771</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1191 CA ARG A 155 -11.500 70.836 18.181 1.00 21.05 C </line>
<line>ATOM 1202 CA THR A 156 -10.109 73.083 20.878 1.00 21.67 C </line>
<line>ATOM 1209 CA PHE A 157 -7.506 70.592 22.034 1.00 23.55 C </line>
<line>ATOM 1220 CA PHE A 158 -6.078 69.939 18.549 1.00 20.51 C </line>
<line>ATOM 1231 CA GLN A 159 -5.810 73.512 17.922 1.00 27.02 C </line>
<line>ATOM 1240 CA ARG A 160 -3.080 73.680 20.489 1.00 16.38 C </line>
<line>ATOM 1251 CA LEU A 161 -1.160 71.552 18.082 1.00 18.36 C </line>
<line>ATOM 1259 CA ASN A 162 -2.074 73.496 15.074 1.00 20.64 C </line>
<line>ATOM 1267 CA MET A 163 -4.159 70.829 13.567 1.00 14.80 C </line>
<line>ATOM 1275 CA ASN A 164 -7.284 71.705 11.571 1.00 16.96 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.89 8.67 10.28 10.37 9.18 6.29 5.51 5.55 3.78 </line>
<line>THR CA 9.82 9.69 9.92 9.50 7.07 5.23 5.62 3.78 </line>
<line>PHE CA 10.52 9.11 9.29 7.54 5.61 5.32 3.82 </line>
<line>PHE CA 7.30 5.41 6.38 5.20 5.17 3.64 </line>
<line>GLN CA 6.77 5.37 4.70 5.05 3.75 </line>
<line>ARG CA 10.06 7.56 5.51 3.74 </line>
<line>LEU CA 8.94 5.47 3.70 </line>
<line>ASN CA 6.53 3.71 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>THR CA 280</line>
<line>PHE CA 349</line>
<line>PHE CA 395</line>
<line>GLN CA 308</line>
<line>ARG CA 318</line>
<line>LEU CA 381</line>
<line>ASN CA 322</line>
<line>MET CA 367</line>
<line>ASN CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2VO2</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>2VO2X</entryIDChain>
<sequence>RDVFGKAMGLT</sequence>
<secondary-structure>HIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1107 CA ARG X 142 16.119 42.850 9.353 1.00 21.60 C </line>
<line>ATOM 1118 CA ASP X 143 17.213 44.901 6.295 1.00 22.51 C </line>
<line>ATOM 1128 CA AVAL X 144 18.680 47.618 8.499 0.50 20.64 C </line>
<line>ATOM 1137 CA PHE X 145 20.032 45.835 11.601 1.00 20.17 C </line>
<line>ATOM 1148 CA GLY X 146 20.830 42.578 9.781 1.00 22.43 C </line>
<line>ATOM 1152 CA LYS X 147 21.708 43.252 6.103 1.00 25.55 C </line>
<line>ATOM 1161 CA ALA X 148 23.403 46.637 6.757 1.00 22.82 C </line>
<line>ATOM 1166 CA MET X 149 24.651 46.632 10.346 1.00 21.34 C </line>
<line>ATOM 1174 CA GLY X 150 25.412 42.877 10.660 1.00 20.66 C </line>
<line>ATOM 1178 CA LEU X 151 23.513 42.403 13.950 1.00 19.22 C </line>
<line>ATOM 1186 CA THR X 152 21.395 39.391 14.919 1.00 16.70 C </line>
</atom-coordinate>
<distance-map>
<line> THR LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.41 8.72 9.38 9.39 8.61 6.48 4.74 5.41 5.48 3.84 </line>
<line>ASP CA 11.06 10.22 9.51 8.64 6.45 4.79 5.53 6.08 3.79 </line>
<line>VAL CA 10.78 8.96 8.51 6.33 5.13 5.83 5.63 3.82 </line>
<line>PHE CA 7.38 5.42 6.21 4.85 5.96 6.30 3.82 </line>
<line>GLY CA 6.07 4.96 4.68 5.60 5.68 3.84 </line>
<line>LYS CA 9.63 8.10 5.88 6.17 3.84 </line>
<line>ALA CA 11.10 8.35 5.78 3.80 </line>
<line>MET CA 9.16 5.67 3.84 </line>
<line>GLY CA 6.81 3.83 </line>
<line>LEU CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 319</line>
<line>ASP CA 267</line>
<line>VAL CA 357</line>
<line>PHE CA 404</line>
<line>GLY CA 306</line>
<line>LYS CA 248</line>
<line>ALA CA 311</line>
<line>MET CA 379</line>
<line>GLY CA 333</line>
<line>LEU CA 365</line>
<line>THR CA 314</line>
</n14>
</entryChain>
<parallel>
<x>-26.707000732421875</x>
<y>27.094999313354492</y>
<z>9.739999771118164</z>
</parallel>
<rotation>
<x>0.9169999957084656</x>
<y>0.3330000042915344</y>
<z>-0.21799999475479126</z>
<x>0.3709999918937683</x>
<y>-0.5189999938011169</y>
<z>0.7699999809265137</z>
<x>0.14300000667572021</x>
<y>-0.7879999876022339</y>
<z>-0.5989999771118164</z>
</rotation>
<rmsd>0.8379549980163574</rmsd>
<dmax>1.6664249897003174</dmax>
</indel>