NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1CPDA-2WD4A
confEVID 1CPDA-2WD4A
pdbIDA 1CPD
pdbIDB 2WD4
pdbChainA A
pdbChainB A
identity 0.318699985742569
indelSize 2
alignment <alignment>
<seq1>LVHVASVEKGRSYEDFQK---VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq1>
<seq2>----GKSYPTVSADYQKAVEKAKKKLRGFIAEK-------RCAPLMLRLAAHSAGTFDKGTKTGGPF-GTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKE---------------GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD------------------</seq2>
<ss_1> HHHHHH---HHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE GGG HHHHHHHHHHHH HHHHHHHHHHHHHHHHH HHHH </ss_1>
<ss_2>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHGGG - GGG HHHH GGG HHHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHHIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHHH ------------------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>EDFQK---VYNAI</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 102 CA GLU A 17 21.360 53.914 5.104 1.00 29.92 C </line>
<line>ATOM 111 CA ASP A 18 21.998 54.244 8.796 1.00 23.46 C </line>
<line>ATOM 119 CA PHE A 19 18.354 55.023 9.441 1.00 19.96 C </line>
<line>ATOM 130 CA GLN A 20 17.163 52.348 7.077 1.00 17.66 C </line>
<line>ATOM 139 CA LYS A 21 18.910 49.901 9.327 1.00 23.05 C </line>
<line>ATOM 148 CA VAL A 22 17.289 51.109 12.448 1.00 13.78 C </line>
<line>ATOM 155 CA TYR A 23 13.951 50.800 10.615 1.00 16.65 C </line>
<line>ATOM 167 CA ASN A 24 14.752 47.289 9.443 1.00 15.68 C </line>
<line>ATOM 175 CA ALA A 25 15.590 46.259 13.029 1.00 14.50 C </line>
<line>ATOM 180 CA ILE A 26 12.296 47.514 14.333 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN TYR VAL LYS GLN PHE ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.43 12.44 10.31 9.74 8.85 6.32 4.89 5.39 3.76 </line>
<line>ASP CA 13.04 11.08 10.06 8.94 6.73 5.36 5.47 3.78 </line>
<line>PHE CA 10.82 9.87 8.53 6.21 5.05 5.15 3.76 </line>
<line>GLN CA 9.99 8.66 6.08 5.02 5.51 3.76 </line>
<line>LYS CA 8.63 6.16 4.91 5.20 3.72 </line>
<line>VAL CA 6.43 5.17 5.48 3.82 </line>
<line>TYR CA 5.23 5.40 3.79 </line>
<line>ASN CA 5.48 3.82 </line>
<line>ALA CA 3.76 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 275</line>
<line>ASP CA 318</line>
<line>PHE CA 430</line>
<line>GLN CA 401</line>
<line>LYS CA 382</line>
<line>VAL CA 443</line>
<line>TYR CA 518</line>
<line>ASN CA 397</line>
<line>ALA CA 397</line>
<line>ILE CA 462</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2WD4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2WD4A</entryIDChain>
<sequence>DYQKAVEKAKKKL</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 69 CA ASP A 11 46.922 59.459 28.795 1.00 12.46 C </line>
<line>ATOM 77 CA TYR A 12 44.068 58.518 26.458 1.00 10.04 C </line>
<line>ATOM 91 CA AGLN A 13 42.911 55.823 28.911 0.50 10.47 C </line>
<line>ATOM 104 CA LYS A 14 43.095 58.268 31.829 1.00 11.04 C </line>
<line>ATOM 113 CA ALA A 15 40.883 60.677 29.872 1.00 9.59 C </line>
<line>ATOM 118 CA VAL A 16 38.350 57.908 29.145 1.00 8.88 C </line>
<line>ATOM 125 CA GLU A 17 38.100 57.165 32.859 1.00 9.84 C </line>
<line>ATOM 134 CA LYS A 18 37.730 60.788 33.917 1.00 10.07 C </line>
<line>ATOM 143 CA ALA A 19 35.270 61.545 31.103 1.00 7.80 C </line>
<line>ATOM 148 CA LYS A 20 33.153 58.538 32.133 1.00 7.90 C </line>
<line>ATOM 157 CA ALYS A 21 32.772 59.991 35.635 0.50 8.27 C </line>
<line>ATOM 175 CA LYS A 22 32.055 63.529 34.394 1.00 9.10 C </line>
<line>ATOM 184 CA LEU A 23 29.473 62.077 31.964 1.00 7.43 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS LYS LYS ALA LYS GLU VAL ALA LYS GLN TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 17.93 16.40 15.73 14.20 12.06 10.61 9.98 8.72 6.25 5.03 5.41 3.81 </line>
<line>TYR CA 16.00 15.24 14.63 12.30 10.40 10.05 8.86 6.35 5.14 5.46 3.82 </line>
<line>GLN CA 15.13 14.40 12.86 10.63 9.79 8.75 6.37 5.02 5.35 3.81 </line>
<line>LYS CA 14.15 12.50 11.14 9.95 8.51 6.28 5.22 5.46 3.81 </line>
<line>ALA CA 11.68 10.32 9.97 8.33 5.81 5.13 5.39 3.82 </line>
<line>VAL CA 10.20 9.94 8.81 6.03 5.15 5.61 3.80 </line>
<line>GLU CA 9.97 8.91 6.64 5.19 5.50 3.79 </line>
<line>LYS CA 8.58 6.32 5.31 5.40 3.81 </line>
<line>ALA CA 5.88 5.01 5.40 3.82 </line>
<line>LYS CA 5.11 5.59 3.81 </line>
<line>LYS CA 5.36 3.82 </line>
<line>LYS CA 3.83 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 166</line>
<line>TYR CA 259</line>
<line>GLN CA 256</line>
<line>LYS CA 221</line>
<line>ALA CA 281</line>
<line>VAL CA 361</line>
<line>GLU CA 304</line>
<line>LYS CA 276</line>
<line>ALA CA 364</line>
<line>LYS CA 380</line>
<line>LYS CA 274</line>
<line>LYS CA 304</line>
<line>LEU CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-21.91200065612793</x>
<y>-7.27400016784668</y>
<z>-21.56100082397461</z>
</parallel>
<rotation>
<x>0.5820000171661377</x>
<y>0.32600000500679016</y>
<z>-0.7450000047683716</z>
<x>0.5889999866485596</x>
<y>-0.800000011920929</y>
<z>0.10999999940395355</z>
<x>-0.5600000023841858</x>
<y>-0.503000020980835</y>
<z>-0.6579999923706055</z>
</rotation>
<rmsd>2.560318946838379</rmsd>
<dmax>3.7710320949554443</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CPDA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1191 CA ARG A 155 -11.500 70.836 18.181 1.00 21.05 C </line>
<line>ATOM 1202 CA THR A 156 -10.109 73.083 20.878 1.00 21.67 C </line>
<line>ATOM 1209 CA PHE A 157 -7.506 70.592 22.034 1.00 23.55 C </line>
<line>ATOM 1220 CA PHE A 158 -6.078 69.939 18.549 1.00 20.51 C </line>
<line>ATOM 1231 CA GLN A 159 -5.810 73.512 17.922 1.00 27.02 C </line>
<line>ATOM 1240 CA ARG A 160 -3.080 73.680 20.489 1.00 16.38 C </line>
<line>ATOM 1251 CA LEU A 161 -1.160 71.552 18.082 1.00 18.36 C </line>
<line>ATOM 1259 CA ASN A 162 -2.074 73.496 15.074 1.00 20.64 C </line>
<line>ATOM 1267 CA MET A 163 -4.159 70.829 13.567 1.00 14.80 C </line>
<line>ATOM 1275 CA ASN A 164 -7.284 71.705 11.571 1.00 16.96 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.89 8.67 10.28 10.37 9.18 6.29 5.51 5.55 3.78 </line>
<line>THR CA 9.82 9.69 9.92 9.50 7.07 5.23 5.62 3.78 </line>
<line>PHE CA 10.52 9.11 9.29 7.54 5.61 5.32 3.82 </line>
<line>PHE CA 7.30 5.41 6.38 5.20 5.17 3.64 </line>
<line>GLN CA 6.77 5.37 4.70 5.05 3.75 </line>
<line>ARG CA 10.06 7.56 5.51 3.74 </line>
<line>LEU CA 8.94 5.47 3.70 </line>
<line>ASN CA 6.53 3.71 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 333</line>
<line>THR CA 280</line>
<line>PHE CA 349</line>
<line>PHE CA 395</line>
<line>GLN CA 308</line>
<line>ARG CA 318</line>
<line>LEU CA 381</line>
<line>ASN CA 322</line>
<line>MET CA 367</line>
<line>ASN CA 315</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2WD4</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2WD4A</entryIDChain>
<sequence>RDVFGKAMGLT</sequence>
<secondary-structure>HIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 1120 CA ARG A 142 16.059 42.951 9.262 1.00 15.97 C </line>
<line>ATOM 1131 CA ASP A 143 17.113 45.049 6.251 1.00 18.06 C </line>
<line>ATOM 1139 CA VAL A 144 18.539 47.760 8.507 1.00 17.31 C </line>
<line>ATOM 1146 CA PHE A 145 19.893 45.866 11.545 1.00 15.78 C </line>
<line>ATOM 1157 CA GLY A 146 20.755 42.683 9.652 1.00 16.71 C </line>
<line>ATOM 1161 CA LYS A 147 21.614 43.415 6.030 1.00 18.25 C </line>
<line>ATOM 1170 CA ALA A 148 23.235 46.814 6.670 1.00 16.77 C </line>
<line>ATOM 1175 CA MET A 149 24.563 46.786 10.241 1.00 15.68 C </line>
<line>ATOM 1183 CA GLY A 150 25.239 43.032 10.483 1.00 15.89 C </line>
<line>ATOM 1187 CA LEU A 151 23.467 42.504 13.809 1.00 14.19 C </line>
<line>ATOM 1195 CA THR A 152 21.379 39.451 14.768 1.00 12.90 C </line>
</atom-coordinate>
<distance-map>
<line> THR LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.42 8.70 9.26 9.38 8.55 6.44 4.72 5.33 5.46 3.82 </line>
<line>ASP CA 11.05 10.20 9.38 8.63 6.39 4.79 5.52 6.04 3.80 </line>
<line>VAL CA 10.78 8.95 8.43 6.34 5.13 5.87 5.66 3.83 </line>
<line>PHE CA 7.33 5.40 6.14 4.94 5.99 6.28 3.80 </line>
<line>GLY CA 6.08 4.97 4.57 5.63 5.67 3.79 </line>
<line>LYS CA 9.60 8.05 5.75 6.15 3.82 </line>
<line>ALA CA 11.10 8.34 5.73 3.81 </line>
<line>MET CA 9.19 5.68 3.82 </line>
<line>GLY CA 6.79 3.81 </line>
<line>LEU CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 316</line>
<line>ASP CA 267</line>
<line>VAL CA 359</line>
<line>PHE CA 400</line>
<line>GLY CA 307</line>
<line>LYS CA 251</line>
<line>ALA CA 310</line>
<line>MET CA 375</line>
<line>GLY CA 330</line>
<line>LEU CA 363</line>
<line>THR CA 308</line>
</n14>
</entryChain>
<parallel>
<x>-26.589000701904297</x>
<y>26.9689998626709</y>
<z>9.824999809265137</z>
</parallel>
<rotation>
<x>0.9160000085830688</x>
<y>0.33000001311302185</y>
<z>-0.2290000021457672</z>
<x>0.37599998712539673</x>
<y>-0.5</y>
<z>0.7799999713897705</z>
<x>0.14300000667572021</x>
<y>-0.8009999990463257</y>
<z>-0.5820000171661377</z>
</rotation>
<rmsd>0.8498769998550415</rmsd>
<dmax>1.667449951171875</dmax>
</indel>